Nothobranchius furzeri (turquoise killifish): 107380209
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Entry
107380209 CDS
T05163
Symbol
limch1
Name
(RefSeq) LIM and calponin homology domains-containing protein 1 isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
nfu04990
]
107380209 (limch1)
Domain-containing proteins not elsewhere classified [BR:
nfu04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
107380209 (limch1)
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Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
107380209
NCBI-ProteinID:
XP_015806823
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All DBs
Position
sgr01:complement(49880918..49995676)
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AA seq
1205 aa
AA seq
DB search
MASPAADIGHSHQQHHPVTESAAEPAFQEAQKWIEAVTGRCFGDRDFRGGLENGILLCEL
LSSIRPGLVKKINRLPTPIAGLDNLSVFLRGCEELGLKGSQLFDPGDLQDTSTRPTAKGS
DCSRRLKNVLITIYWLGRSANGCISYSGPTLDLKEFEGLLSQMRKDAEVADSPTRSIRDS
GYVDCWESERSDSLSPPRHGREDSFDSLDSFGSRSQQTPSPDILVARGSSDGRGSDSESD
GPFYRRMPDLHKDDMLARRTSVTELRTAMPFNQYLPNKSNQTGYVPTPLRKKRNDKEEGG
RKSWSTATSPVGGDRPCSTPTRSSSEELIPCLTALTLKTSSTAGKHLTATDQKVTSATGS
DGDDRPACLTLTSPKYTQSPSDFLPVPTAMATTSSESTGAGRRDGKDLSEREDPQEEKPC
LGCSFPATSLSMIDMRDEEEVILHPHSQVRHELMHNHYNKLKEEENHWQDDLARWKSRRR
SISQDLIKKEEERKTMERLLSGDSCISQRRRSIKTYREIVEEKERREEELRQAYKRARNP
EEASAILQRYAQRFSISESILERLQLPKLLDRSISADPFFPISLTPSPTTPDPFDMDFDG
SLKYLRQQSAPTPKFTSLLEAQIEEFPKDSSSQQRPQIRSRSSDPPSTRALSPTPVALLT
PKPYFQPRPSPADSRNNKPESHEEESPPRFQASPSRSRNRPEGTLSSEDSPVQHPHTGQK
KTDGTQISVKAASQDVQEEKVTEHLTPPSRPTSLTTELQKHKESFRKTESQDSLEEVKSN
TAVEEAPPAXAKQEDEAKRSSEKLIPPGINTQNTFTTQVPLSQEPSQRMETAPRSAAPAP
FGHHSPKETSDSEISVRSSQTSSNPKSRWEFFGPSEDSEKDCRTVVSVPVLPQARQGNRW
SWDPDEERKRQERWQQEQERVLQEKYQREQEKLKEEWEKAQREVVEEGRKYHEEERRILE
ETVMPLTPRSSALPSPSRGELSSSSELQDTIVRSLADWERKQELLERQSRGNTESSEWRQ
REKDRTSDTSTADDSMDTGRSLVSQNSSQAERLGHGVHNGQKFPPPPAKPSTPVRKPQEP
PAESDGPSRPAGERRSGSINNNIRSSSSKPAAACPSAPDMLPPPPNRSVSGKKLCSSCGQ
PLGKGAAMIIETLSLYFHIHCFKCGVCKGQLGDTTTGTDVRIRNGLLNCNQCYIRSRSAG
QPTML
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtccggctgcagacataggacattctcatcagcagcatcaccctgtgaccgaa
tcagccgccgagcctgcgtttcaggaggcgcagaagtggatagaggctgtcacaggaaga
tgtttcggtgacagggatttccgaggaggtctggagaacgggatcctgctgtgcgagtta
ttgagctctattagacctggcttggtaaagaaaatcaacagacttccaacacccatagct
ggcctggacaaccttagtgtgtttctacgtggctgtgaggaattgggactgaagggatcc
cagctgtttgaccctggagatctgcaggatacatcaacacgtccaactgccaagggaagc
gactgcagtcgaagactcaagaatgtattaatcaccatctactggcttggtcgttctgcc
aatggttgcatctcctacagcgggcccacgctggacctgaaggagtttgaaggcttgctg
tcacaaatgcgaaaggacgcagaggtggcggacagcccgacacgcagcatccgggacagc
ggctacgtcgactgctgggaatctgagcgcagcgactctctttctccaccacgccacgga
cgagaggattcattcgacagcctggactcctttggttcgcgctcacaacagaccccgtca
ccagacatcctggttgcccgcggcagcagcgatggtcgcggcagtgactcggagtccgac
ggccctttttacaggaggatgccagacctccataaagatgacatgttggctcggcggaca
tcggtcactgagctgcgaaccgccatgcccttcaaccagtacctgccaaacaagagcaac
caaacgggatatgtgccaacgccgctacgcaaaaagagaaatgacaaggaggagggggga
cgcaagagctggagtactgcaacctcacctgtagggggcgacaggccttgtagtactccg
actcgctcaagctcagaggaactcatcccatgcttgacggctctaacgctgaagactagc
agcacagctgggaaacatctgactgcaacagaccagaaggttacatcagccacaggttca
gatggggatgatagaccagcctgtctaactctgacctcacccaaatacactcagagtcca
tctgacttccttcctgtgcccactgccatggcaaccacttcatcagaatcaactggtgca
ggccgacgggatggaaaggatctgagtgaaagagaagacccacaggaagagaaaccttgt
ttgggctgcagttttccagcaacgagtttgagtatgatcgacatgcgtgatgaagaagag
gtcatcctgcatccacatagtcaggttcgtcatgagctgatgcacaaccattacaacaaa
ctgaaggaagaggagaaccactggcaggacgaccttgcgcgatggaaaagtcggaggagg
agtatttctcaggatctgattaaaaaagaggaggagagaaaaacgatggagcgcctgctg
tcaggagacagctgtatctctcagaggagaagaagcatcaaaacctacagagagatcgtg
gaggagaaggagcggcgtgaggaggagctgcgacaggcatacaaaagagccagaaatcca
gaggaggcgtcagccatcctccagcgttatgcccaacgtttctccatcagcgagtcgatc
ctggaacgtctacagctaccaaagctcctcgaccgcagcatatctgctgaccctttcttc
cccatatccttgacaccctcccccacaactccagacccatttgacatggacttcgacggg
tctttgaagtatctgcgccagcagtcggccccaactccaaagtttacatccttgttggag
gcgcagatagaagagtttcctaaagactcctcctcacagcagcggcctcagatccgctct
cgctcctctgatccgccgtccacacgagctctgtcccccacacctgtggctttgttgaca
cccaagccttacttccagccccgtccctctcctgctgacagccggaacaacaagcctgag
agccatgaagaggaatcacctccccgtttccaggcgtctccttccagatccagaaaccgc
cccgaaggcacgctctcgtcagaggactcacctgttcagcatccacacaccggccaaaaa
aagactgatggcactcaaattagcgtaaaggcagcatctcaagatgtccaggaggagaaa
gtcactgagcacttaacaccacccagccggcccacttctcttacaacggagctgcagaag
cataaggaaagcttcagaaagactgaaagccaggattctttggaggaagtaaagtcaaac
actgcagttgaagaggcgccacctgcagntgccaaacaagaagacgaagctaaacgatcc
agtgaaaagctcatcccaccagggattaacacacaaaataccttcacaacgcaagtcccc
ttgtctcaggagccctcgcagagaatggagacagcgccccgctccgctgcacctgcccca
tttggacatcactctccaaaggaaacatcagactctgagatcagtgtcaggtcttcacag
acatccagcaaccctaagtcacgttgggagttcttcggtccatcagaagattcagagaag
gactgtcgaacagttgtgtcagtgccggtgttgccccaggccaggcagggaaaccgctgg
tcttgggacccggatgaggagcgaaagcgtcaggaaaggtggcagcaagagcaggagcgc
gtgctgcaggagaagtaccagcgagagcaggagaagctgaaggaggagtgggagaaagcc
cagagggaggtggtagaggaggggaggaagtatcatgaggaggagcgcaggatactggag
gaaaccgtgatgcctctgactcctcgctcctctgccctgccctcccccagccgaggtgag
ctctcctccagctccgagcttcaggataccatcgtgcgttctctggctgactgggaacgc
aaacaggaactgctggagaggcagtctagaggaaacacagaaagttcagagtggagacag
cgagagaaggacagaaccagtgatacaagcacagctgacgacagcatggacacaggcaga
agcctggtgagtcagaacagcagccaggcagaaagactcggtcacggcgttcacaatgga
cagaagtttcctccacctccagccaaaccttctacaccggtcaggaaaccacaagaaccc
ccagctgagagcgacgggccaagtcggcctgctggagagagaaggagtggctccataaat
aataacataagaagcagctcatcaaagcctgccgcagcatgtccatcagcaccagacatg
ctgcccccacctcccaacaggtctgtcagtgggaagaagctgtgttccagctgtggtcag
cctttagggaagggggcagccatgatcattgagaccctcagtctgtacttccacatccac
tgctttaagtgtggggtgtgtaagggacagttaggagacacgaccacggggacagacgtc
cgaattagaaacggcctcctcaactgtaaccagtgctacatccgctctcgctcggccggc
cagccaaccatgttgtga
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integrated database retrieval system
