Nothobranchius furzeri (turquoise killifish): 107380907
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Entry
107380907 CDS
T05163
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
107380907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107380907
03041 Spliceosome [BR:
nfu03041
]
107380907
03036 Chromosome and associated proteins [BR:
nfu03036
]
107380907
Enzymes [BR:
nfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107380907
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107380907
mRNA cycle factors
Common to processing body (P body) and stress granule
107380907
Spliceosome [BR:
nfu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107380907
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107380907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
107380907
NCBI-ProteinID:
XP_015807795
UniProt:
A0A1A7ZJS7
LinkDB
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Position
sgr06:49309241..49328260
Genome browser
AA seq
735 aa
AA seq
DB search
MSHVAVENAHGLEQQLAVLDLSAPDGQGGRYIPPHLRNKDASKNVGNAFAAGRQGAYTIA
PAANYGWDATRNNFVNGYHDNRMAGNSFNRGPPRMERGRGGVGGGGYRGNRGGVFNPINP
AQPMGFGGYDNKDTGGWNAAKDAYSSFGNSRGKSAFFNNRDNSSRGRFDQAGFGGNGGGN
SRWVEEARDDGDWSKLLPRNERLEHDLFSASNTGINFEKYDDIPVEATGQNCPHHIESFQ
DVDMGEIIMGNVALSRYTRPTPVQKYAIPIVKSKRDLMACAQTGSGKTAAFLLPILSQIY
TDGPGEALNATKASGQDNGKYGRRKQYPIALVLAPTRELALQIHDEARKFSYRSRVRPCV
VYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDHCNYLVLDEADRMLDMGFEP
QIRRIVEQDTMPHKGIRQTLMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKV
VWVEESDKRSFLLDLLSATVIPSEVQDSTGDSIEKPGKDSLTLVFVETKKGADALEDFLY
REGYACTSIHGDRSQRDREEALSQFRSGKCPILVATAVAARGLDISNVKHVINFDLPSDI
EEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYEHQHKS
NNRGRSKRFSGGFGARDYRQTAAGGNSGGFGGRGGRSQAGHGGNRGFGGGGFGNFYTSDG
YGGNYSHSQVDWWGN
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggcggtcgaaaatgcccacggtctagagcagcagctcgctgtcctagac
ctgagtgctccggatggacaaggaggacgatatattcctccacatttacggaacaaagat
gcatccaagaatgtaggaaatgcgtttgctgctggacgacagggggcatacaccattgca
cctgcagccaactatggatgggatgcaacccgtaacaactttgtgaacggctaccatgac
aaccgcatggctgggaactccttcaaccgcggcccgcctcgaatggagcggggacgtggg
ggagtcggaggaggcggttaccgcggcaacaggggtggtgtcttcaaccccatcaaccca
gcacagcctatgggttttggtgggtacgacaataaagacacaggaggctggaacgctgcc
aaggacgcttacagcagctttggcaacagcagagggaagtctgccttcttcaacaacaga
gacaactccagcagaggaaggtttgaccaagctggattcggtggcaacgggggagggaac
agccgctgggtggaggaggccagagacgacggagactggtccaaactgcttcctcggaac
gagcgccttgaacacgacctgttctccgccagcaacaccgggataaactttgagaagtac
gatgacatcccagtagaagctacgggacagaactgccctcatcacatcgagagcttccag
gatgtagacatgggcgagatcatcatgggcaacgtggctctgagccgctacaccagacca
acacctgttcagaaatacgccattcccatcgtcaagtccaagagggacctgatggcctgc
gcccagacgggctctggaaaaaccgcagcattcctgcttccgatcctcagtcagatctac
acagatggaccgggagaagctcttaatgccaccaaagcctctggacaggacaacgggaag
tacgggcgccgtaagcagtaccccatagccctggtgctggctccgacccgagaactggct
ctgcagattcatgatgaggcccggaagttttcctaccgctccagagtgcgtccctgcgtc
gtgtacggaggagccgacatcggccagcagatcagagacctggagagaggctgccacctg
ctggtggccacgcccggcaggctggtggacatgatggagagaggcaagatcggactggac
cactgcaactacctggtcctggacgaggccgatcggatgttggacatgggcttcgagccg
cagatccgacggatcgtggagcaggacaccatgcctcacaagggcatcaggcaaaccttg
atgtttagcgctacgtttcccaaagagatccagatcctagccagggatttcctggaggac
tacatcttcctggccgtgggccgagtgggttccacctcggagaacatcacgcagaaagtg
gtgtgggtggaagagagcgacaagaggtccttcctcctggatctgctcagcgccaccgtc
atccccagcgaggtacaggacagtactggagacagcatagagaaacctggtaaggactcg
ctgactctcgtgtttgtggagaccaagaaaggagcagatgcgttggaggacttcctgtac
cgggagggctacgcctgcaccagtatccatggtgaccgctcccagagagaccgggaggag
gctctgagccagttcagatcaggaaaatgccccattcttgttgccacagcggttgcagct
cgaggtcttgacatctccaacgtgaaacacgtgattaacttcgacctgcccagtgacatc
gaggagtacgtccaccgtatcggacgtacgggacgtgttgggaacctgggactggccacg
tcgttcttcaacgataaaaatggaaacatcactaaagacctgctggacatcttggtcgaa
gccaaacaggaagtgccctcgtggctggagagtctggcctatgaacaccagcacaagagt
aacaacagaggacgctccaagaggttctctggtggttttggagctcgtgattatcgtcag
acggctgctggaggaaactcaggagggttcgggggacgtggaggacgcagccaggcagga
catgggggaaaccgcggctttggtggaggtggttttggcaacttttacaccagcgacggc
tacggcggcaactactcgcactctcaagtagactggtggggcaactag
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