Nothobranchius furzeri (turquoise killifish): 107381638
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Entry
107381638 CDS
T05163
Symbol
pcdh17
Name
(RefSeq) protocadherin-17 isoform X1
KO
K16499
protocadherin delta 2
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
nfu04515
]
107381638 (pcdh17)
Cell adhesion molecules [BR:
nfu04515
]
Cadherins
Protocadherins
107381638 (pcdh17)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
PepSY
Cadherin_C_2
Sde0182_C
Motif
Other DBs
NCBI-GeneID:
107381638
NCBI-ProteinID:
XP_015808896
UniProt:
A0A1A8AYH0
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Position
sgr07:complement(43652747..43742662)
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AA seq
1141 aa
AA seq
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MHLSVFFFLLLWAQALTLKNLNYSVPEEQGPGTVIGNIAKDARLGLEQTGQGGQGKKANF
RVLENSAPHLIDVDPQSGLLYTKQRIDRETLCKRNPKCQLSMEVFANDKEICMIKIDIQD
INDNSPAFPSDQIDIDISENAVPGTRFPLTSAHDPDAGENGLKTYQITRDDYNLFSLEVK
SRGDGTKFPELVIQRPLDREERSHHTLILSATDGGEYPRSGTMQINVKVIDSNDNSPVFD
QPSYVVEIPENSPPGKVLIDLNATDPDEGNNGQVVYSFSGYAPERIRELFSIDSRTGVIK
IQGEIDYEESPVIEIDVQAKDLGPNPIPGHCKVTVKVLDRNDNWPSVGFVSVRQGAISEA
APPGTVIALVRVTDKDSGRNGQLQCRVLGNVPFKLEENYDNFYTVVTDRPLDREVQDEFN
VTIVAKDNGIPPLNSTKSFTVKILDENDNVPRFTKSVYLLQIPENNIPGEYLGSVLAHDP
DLGQNGTVYYSIINSNVSGGDVNTYVNVNAANGAIYAVRSFNYEQIKYFDFKVLAKDAGS
PHLESNATVRISVLDVNDNIPVIVLPLLLNDTAEIHVPRNVGVGYIVTTVRAVDNDYGES
GRLTYEISDGNEEHLFEIDPITGEVRTAHPFWDDVSPIVELIIRVSDHGKPTLTAAARII
IKASNGRPPDGLPHIKDNQNWDMSLPLIVTLSIISIMLLAAMVTIAIKCKRENKEIRTYN
CRIAEYSHPQLGKGKKKKINKNDIMLVQSEVEERDAMNVMNVVSSPSLATSPMYFDYQTR
LPLSSPRSEVMYLKPTANNLSVPQSHVGCHTSFTGPVTSTTDTPTNRMSIIQTDNFPTEP
NYMGSRQQFVQSSSTFKDPERASLRDSGHGDSDQADSDQDTNKGSCCDMSAKEALKLKAS
GVKPPPLEQDEDCVNCTEECRVLGHSDRCWMPQFPAGGNQAEGVDYRNNMFVPAGMETVP
ETETYETVNPNGKKTFCTFGKERRDHTILVANVKPYLKAKRALSPLLQEVPSASSSPTKG
CSTMPSCSAVKGPADGAEGKPPLASCSGHYGPPVGQYLSPTKQTRDQGVYPPLPSSDPVA
KVLAEARSRISQEAAGEMECVLEQVEPDSSRDGMDADQVVRDIDKLLQDCRDSEATGTLR
K
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgcatctttctgttttctttttcctcctcttgtgggctcaagccctgacattgaaaaac
ttgaattactctgtcccagaggagcaaggtccggggacggtgattgggaacattgccaaa
gatgccaggcttggactcgaacagactgggcagggagggcagggtaaaaaagccaacttc
agggtgctggagaactcggccccgcatcttattgatgtggacccccaaagcggactcctg
tacacaaagcagcgcattgacagagaaacattgtgtaagagaaaccccaagtgccagctt
tccatggaggtgtttgcaaatgacaaggagatatgtatgataaaaatagatattcaggac
atcaatgataactcacctgcattcccttcagatcagatcgatattgacatttcggaaaat
gctgtcccagggacacgctttcctctgacgagtgcacatgaccctgatgcaggagaaaat
ggcctgaaaacctatcaaataacacgcgatgactacaatctcttttctttagaggtaaaa
tcccgaggggacgggaccaaattcccagaattagttattcaacgaccgctggaccgagaa
gaaagaagccatcacactcttattttgtctgccacagatggtggagagtatcctagatca
ggcaccatgcaaataaatgtaaaagttattgattccaatgacaacagcccagtgtttgat
cagccctcatatgttgtggaaattcctgaaaattcgcctcctggaaaagttctgattgat
ttgaatgcaacagatcctgatgagggaaacaatggccaagtggtctactctttcagtggt
tatgctccagagagaatccgtgagcttttctctatagattcaagaacaggcgtcataaag
attcagggtgaaattgactatgaagagagtccagttattgagattgacgttcaggcaaaa
gatctgggtcccaatcccatcccaggccattgtaaagtcaccgtcaaagtgctcgacagg
aatgataactggccatctgtaggcttcgtgtctgtgagacagggagccatcagtgaagca
gcacccccaggcactgtcattgctctggttcgtgtcacagacaaggactcaggcaggaat
ggacagcttcaatgcagagtgctgggcaatgtcccttttaaacttgaggaaaactatgat
aacttttacactgtagtgacagacaggcccctggatagggaggtgcaggacgagtttaac
gtcaccattgtagccaaagacaatggcattcctcctctgaactccacaaaatctttcact
gtcaagattcttgatgagaatgacaatgttccccgcttcactaagtcagtctacctactt
cagattcctgaaaacaacatccctggggagtaccttggttcagttctggcacacgacccg
gacctgggccagaatggcacagtttattacagcattattaactctaatgtaagtgggggt
gatgtgaacacttatgttaacgtaaatgcagcaaacggagccatctatgctgtcagatct
tttaactatgagcaaattaagtattttgactttaaagttcttgctaaggatgcaggatcc
ccacacctagagagcaatgctacagtgcgtatcagtgttctggatgtcaatgacaacatc
cctgtcattgttttgccacttctcctgaacgatacagctgagattcacgttccacggaat
gttggtgtgggctatattgttaccacagtcagagctgtggacaatgactatggtgaaagt
gggaggctcacctacgaaatctcagatggcaacgaagagcatctctttgagatagatcca
ataacaggggaagttcgaacagcccacccattttgggatgatgtcagtcccatcgtagag
ctgatcattcgtgtatcggaccatggcaagccaactctgactgctgccgccagaatcatc
atcaaggcttccaatgggcgacctcctgatggactgccacacattaaagacaatcaaaac
tgggacatgtcactgcctcttatagtaactctaagcatcatatctatcatgcttctagct
gccatggtgacgatagcaatcaagtgcaagcgggaaaacaaggagattcgtacttataac
tgtcgcattgcagagtattctcaccctcagctggggaaaggcaagaagaagaagatcaac
aagaacgacatcatgctggtgcagagcgaggtggaggagcgggatgccatgaatgtgatg
aatgtggtaagcagcccttcacttgccacctctcccatgtactttgactatcagacacgc
ctgccactcagctcaccaaggtcagaggtcatgtacctcaaacccactgccaataacctc
agcgttccccaaagccacgtgggatgccacaccagcttcacaggcccagtcaccagcact
acagacacccctactaaccgcatgtccatcatacagacggacaatttccccactgagcct
aattatatgggtagcagacaacagtttgttcaaagtagttcaacattcaaagacccggag
cgagcgagcctcagggacagcggtcatggtgacagcgaccaggcagacagcgaccaggac
accaacaaaggttcctgctgtgatatgtctgcaaaagaagctctcaagttaaaggcttca
ggtgtgaaaccaccacctttggagcaagatgaggattgtgtaaattgcacagaggagtgc
agagtactgggtcactctgaccgttgctggatgcctcagttccctgcaggtggaaaccag
gcagaaggtgttgactaccgtaacaacatgtttgtgccagccgggatggagacggtacct
gagacagagacttatgagactgtcaatcccaatggcaagaaaaccttctgtacctttggc
aaagagaggcgtgatcacaccatcctggtcgccaacgtcaagccctacttaaaagcaaaa
cgcgccctcagcccgctgctccaagaggttccctcagcctctagcagtcccaccaagggc
tgctccacaatgccttcctgctctgcagtcaaaggcccagcagacggggctgaaggcaaa
cctcctctagccagctgctctggccactacgggcctcctgttggtcagtacctgtcacct
accaaacaaaccagagaccaaggggtctatccacccttgccctcttcagacccggtggcc
aaggtgctcgcagaggcccgctccaggatcagccaggaggccgcaggtgaaatggagtgt
gtcctggagcaggtggagccagattcgagccgcgatggaatggacgctgaccaggtggtg
agagacatcgacaaactattgcaggattgcagagacagcgaggccactggcacgctcaga
aagtga
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