Nothobranchius furzeri (turquoise killifish): 107381780
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Entry
107381780 CDS
T05163
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03420
Nucleotide excision repair
nfu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107381780 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
107381780 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nfu04121
]
107381780 (ddb1)
03400 DNA repair and recombination proteins [BR:
nfu03400
]
107381780 (ddb1)
Ubiquitin system [BR:
nfu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
107381780 (ddb1)
DNA repair and recombination proteins [BR:
nfu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
107381780 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
107381780 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
107381780
NCBI-ProteinID:
XP_015809144
UniProt:
A0A1A8B4K6
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All DBs
Position
sgr07:complement(34550111..34624942)
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AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTSKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSFVTVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFFCGNVAHQQLIQITSGSVRLVL
QESKALVSEWKEPQGKNISVATCNHTQVVLAVGRALYYLQILAGELKQISTTEMEHEVAC
LDITPLGEGGGESPLCAVGLWTDISARVLKLPCFTPLHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLQTGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRRICYQEVSQCFGVLSSRVEIHDVSGSTSVVRPSASTQALSSSVSFSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSIVSCRLGKDPSMYFVVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLTKVIKSVGKIEHSFWRSFHTER
KTEQVTGFIDGDLIESFLDLSRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaactacgtggtaacagcgcagaaacctacggcagtaaacgcctgcatcaca
ggtcatttcacttcagcagaggatctcaatctgctcatagccaaaaacacacgtttggag
atttatgtggtcacagcggaggggctgaggccagtaaaagaagttggcatgtatggcaaa
attgctgtcatggagctctttcgacctaagggtgagagtaaagacctgttgttcattctc
acatccaaatacaatgcctgcatccttgaatacaagcagaatggggacagcattgacatc
atcacccgtgcccatggtaatgtccaggatcgtattggacgtccatcagagacggggatt
attggaattgtagacccagagtgtcgcatgattggtctgaggttgtacgatggactgttc
aaggtgatcccactggaccgggacaaccgtgagctcaaggcgtttaacatcaggctggag
gagctgcaagtcattgatgttcacttcctgtatggctgccaggctccaactgtctgcttc
atctatcaggaccctcaaggacgtcatgtaaagacctatgaggtttccctgagagagaag
gagttcaacaagggcccctggaaacaggagaacgtggaagctgaggcatcaatggttatc
ccagtgccagagccatttggtggtgctataatcataggacaggagtccatcacctaccac
aatggagataaatacctggccatcgcaccgcccactattaagcaaagtacgatcgtctgc
cacaaccgggtggacccaaacggctcacgctacctgctgggggacatggagggacgcctg
ttcatgctgctgctggagaaggaggagctaatggatggcacagtggcgctcaaagacctg
cacgtggagctgctcggagagacttctatcgctgagtgcttgacctacctggacaatggc
gtggtgtttgttggctccagactgggcgactcccagcttgtgaagcttaacgtggacagc
aatgagcagggctcatttgtgaccgtaatggagacgttcaccaacttgggacccatagtg
gacatgtgtgtggtggacctggagaggcagggccagggccagctggtgacgtgctccggt
gcattcaaagaaggctctcttcggatcatccgtaacggcattgggattcatgagcatgcc
agcattgacctgccgggaatcaaaggtttgtggccccttcggtctgaggcaggcagagag
acagatgatatgctggttctgtctttcgtgggtcagacacgggtgttgatgctaagtggc
gaggaggttgaggagactgagctgccaggctttgtggacaaccagcaaacatttttctgt
ggaaacgttgcccaccaacaacttattcaaatcacgtcaggctcggtgcgcctggtgctt
caggagagtaaggcattggtgagtgagtggaaggagcctcagggcaagaacatcagcgtg
gccacctgtaaccacactcaagtggtgttagctgtgggacgggccctctactacctgcag
atcttagccggagagctcaagcaaatcagcaccacagagatggagcacgaggtggcctgc
ctggacatcacgcctctgggggagggcgggggcgagtcaccgctctgcgccgtgggactg
tggactgatatctctgcacgtgtgctcaaactgccttgcttcaccccactgcacaaagaa
atgcttggcggagaaatcatccctcgctccatcctgatgaccacctttgaaggcagctac
tacctgctgtgtgctctgggagacggagctctcttttactttggtctagacctgcagact
ggtgcccttagtgagcgtaaaaaggtcacccttggtacacagccaaccgtgctgaggacc
ttcagatccctctccacttccaacgtcttcgcctgctctgaccgacccactgtcatctac
tcctccaatcacaagctggtgttttccaacgtcaacctaaaggaagtcaattacatgtgc
ccactcaactctgagggctaccctgacagtctggccttggccaataacagcaccctgacc
atcggaaccattgatgagattcagaaactgcacattcgtactgttccactctacgagtct
ccgaggcggatctgttaccaggaggtttcccagtgcttcggcgttctgtccagcagggtg
gagattcacgacgtgagtggcagcacttctgtcgtccggcccagcgctagcacccaggcg
ctctccagcagcgtgagcttcagcaagctcttccccagcagcacctctccgcacgagacc
tcctttggtgaggaggtggaggtgcacagtctgctagtcgtggatcagcacacctttgaa
gttcttcatgcccatcagttccttcccagcgagtatgccctcagcatcgtgtcatgtcgt
ctgggaaaagacccgtcgatgtattttgttgttggcactgccatggtgtacccagaagag
gccgagcccaagcaggggcgaatcattgttttccattacactgacggcaagctgcaaact
gtggctgagaaggaggtgaaaggagccgtctattctatggtggagttcaatggcaaacta
ctggccagcataaacagcacagttcgtctgtatgagtggacggctgagaaggagctgagg
actgagtgcaaccactacaacaacatcatggctctttacctgaagaccaaaggagatttc
atcctggtgggagacctgatgaggtctgtccttctgctggcctacaaacccatggaaggg
aactttgaagagattgctcgtgattttaaccccaactggatgagcgctgtggaaattctt
gatgacgacaacttcctgggggcggagaacgcctttaacttgtttgtttgccaaaaggat
agcgcggccaccaccgacgaggagcggcagcacctgcaggaggtgggggtcttccacctc
ggagagtttgtaaatgttttctgccacggctcgctggtgctgcagaacctcggggagagc
tccactcccacccagggctccgtgctttttggcaccgttaacggcatgattggtctggtg
acatccctgtccgagggctggtacagcctcctgctcgacctgcagaaccgcctcaccaag
gtcatcaagagcgtgggcaagattgaacacagcttctggaggtccttccacacggaacga
aagacggagcaggtcacagggttcatcgacggggacctgatcgaaagcttcctggatctc
agccgggcaaaaatgcaggaagtggtcagcacgctgcagatcgatgacggcagcggcatg
aagcgtgaagccacagtggacgaggtgattaagattgtggaggagctgacgaggatccac
tag
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integrated database retrieval system
