Nothobranchius furzeri (turquoise killifish): 107382072
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Entry
107382072 CDS
T05163
Name
(RefSeq) aggrecan core protein-like
KO
K06792
aggrecan 1
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
nfu00535
]
107382072
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107382072
04091 Lectins [BR:
nfu04091
]
107382072
Proteoglycans [BR:
nfu00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
107382072
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
107382072
Lectins [BR:
nfu04091
]
C-Type lectins
Lecticans
107382072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
EGF
V-set
hEGF
I-set
Izumo-Ig
Ig_3
Motif
Other DBs
NCBI-GeneID:
107382072
NCBI-ProteinID:
XP_015809544
LinkDB
All DBs
Position
sgr07:complement(52987777..53005986)
Genome browser
AA seq
1523 aa
AA seq
DB search
MWKDTQKPSVVSEVQDHTFPDPGAPPIVPLSHRIKWSHVTKEKVTTILVALEGQVHISKS
FLDRVHLLSYPQTPTDASLKITELRSSDSGVYRCEVQHGIEDNHDIVHVHVQGIVFHYRA
IMGRYTLTFEMAEAACSQNSAVVASSEQLQAAYDDGFHQCDAGWLSDHTVRYPIHDPRVN
CYGDKEELPGVRTYGVRDLSETYDVYCFAEKMTGGVFYTTSAEKFTFSEAESACSRQGAQ
LATTGQLYLAWKSGMDICNAGWLRDGSVRYPINIRRPQCGGGLLGVRTVYLHTNQTGYPL
SESRYDAFCYTEAPDEESSGAAEGSGVLSVTSVTQSPELFFSRVTTESEVIGEVETQLPL
DLNETESQTEPSLLQPPSVDDPIEAATAQPGVYKEPSETFVVSSEDVVFHYRSSAGRYAY
MFVEAQLACQSVGGSIATPQHLQAAYEAGYHQCDAGWLLDQTVRYPVVFPREKCAGDLGD
EPGVRSYGLRPADERYDVYCYTGKLTGEVFHVGSAEGFTYDEAVSSCQNHSAVLASTGEL
YAAWKMGFDKCRAGWLLDRSVRYPINNPRSECGGGKSGVHTVYAHPNQTRYPELDAKFDA
YCFRANVLHQTNKTQLNITVIQEALLNKTSVIDLLMLNVSSIVLPIPVEMSGSGSGLADF
GSGSVNGSISGDHSGNLSGSGNLPGSGDGLTSGDSSGSGDISGSRDMSGSGALSGSGDLS
GSGHQSSSGDSSGSGHQSSSGDSSGSGHQSSSGDSSGSGHQSSSGDSSGSGHQSSSGDSS
GSGHQSSSGDSSGSGHQSSSGDSSGSGHQSSSGDSSGSGHQSSSGDSSGSGHLAGSTSTG
GSGSGLSGVGSGITFFFSGADNIVSEEGTSSGGPQEAGEGFTENCIVSSSGSWSGCSSGD
LSPSGSGSGATKSEDSLGGSGHFSGSTSGFTSGQDLSGFLSGSSSGSGESGELSGSGDLQ
IVLVDEKLVHASTTLKENELGAGPLVFSGSGDLLGSSSGSGLSGELSGSGDLQILQIDEN
LIDESTAQKGYELGAGPHVFSGSGDHSGLGVFSGDHSGSASRSESEFVSGVILMGSGLME
LTVSSSGEHKEASGIVFYSSGQGSGGQISGFGSSSFLSGSGSELSGSAVSGSGFSASGEE
GSVKLLTDDLIKAPRQTEAPQELGQGSVQYSGEESGSSFSGGRVFDLSTAPGAPTSSVAS
TEDLSEAVLPSPPAEPVPTEPTRLPEDHPNEAEETETFSETYMMPSFERIPEGLVAPPTA
AKPAFVETPATAGEVEVCHPNPCANGATCVESADSFKCLCLPSYGGKHCKIEEQQCEDGW
TKFQGNCYLHISDRKDWLGAENHCQGLEAHLVSIITPEEQHFVNAFANDYKWIGLSDKAV
ERDFQWTDGTPMQYENWRPNQPDNYFNSGEDCVVMVWHEKGQWNDVPCNYHLPFTCKKGP
VSCGAPPEVENAHTFGARRLQYPVNSIIRYQCKPGFRQRHLPVVRCQDDGHWEKPRVECT
DVKARKRIQHRSSWDPAVSSTEK
NT seq
4572 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaggacacacagaagcccagtgtggtgtctgaagtgcaagaccacacgtttcca
gatcctggagcccctcccatcgtccccctttctcatcgcatcaaatggagccacgtcact
aaagaaaaggtcacaacaatcctggtggccttagagggacaggtgcacatcagcaagagc
ttcctggacagagttcacctgctcagctacccccaaaccccaacagatgccagcctcaag
attaccgagctgcgctccagtgactcgggagtgtatcgctgtgaggtgcaacacgggatc
gaagacaaccatgacattgtgcatgttcatgttcaaggtatcgtgttccactaccgggcc
attatgggtcgctacactctgacctttgagatggcagaggcagcctgctcccagaacagt
gcagttgttgcttcctccgagcagctccaagcagcctatgatgacggtttccaccagtgt
gatgctggctggttgtctgatcacacagtcaggtacccgatccatgatccccgtgtgaac
tgctacggtgacaaagaagaacttcctggtgtcagaacgtacggagtcagagatctcagt
gagacatatgatgtttactgttttgctgagaagatgacaggaggagttttctatacgact
tctgcagaaaagttcaccttctcagaagctgagtcggcatgttcccgtcagggagcccag
ctggccactacgggtcagctgtaccttgcctggaaaagcgggatggacatctgcaacgct
ggctggctgagagacgggagcgtccgttatcctattaacatccgacggccacagtgcgga
gggggtctgctgggggtgcggactgtttacctccacacaaaccagacgggatacccactt
tctgagtcacgctatgatgccttctgctacactgaggctcctgatgaagagagttcaggc
gcagctgaggggagtggcgtgctgtctgttaccagcgtgactcagagtccagagctgttc
tttagcagggtgaccacagagagtgaggtgattggggaggtggagactcagctcccgttg
gatctgaatgagacagagagccaaactgagccatcactgcttcaaccacctagtgttgat
gacccgatcgaggccgccaccgcccaaccgggtgtttacaaggagcccagcgaaaccttt
gttgtatcttcagaggatgttgtcttccattaccgctcaagtgctggacgctatgcctac
atgtttgttgaggcccagttggcctgccagagtgttgggggctccattgctacacctcaa
cacctgcaggctgcatatgaggctgggtaccatcagtgtgatgcaggctggcttctggac
cagactgtgaggtatcctgttgtttttcccagagaaaagtgcgctggagatctaggagat
gaaccaggagttcggtcgtatggtctaagaccagccgacgagagatatgatgtgtattgc
tacaccgggaagctaacaggagaggttttccatgttggatctgctgaaggcttcacctat
gatgaggctgtttctagctgtcaaaaccacagcgcagtgttggcgtccactggagagctc
tatgctgcctggaaaatgggttttgacaagtgtcgtgcaggctggctcctggatcgcagc
gtccgttatcccatcaacaacccacgttctgagtgtgggggaggaaaatcaggagttcac
accgtgtatgcacaccctaatcagacaagataccccgaacttgatgccaaatttgatgca
tactgtttcagagcgaatgttctgcatcaaacaaacaaaactcaactgaacatcacagtt
atccaggaggctctactaaacaagacatcagtgattgatctgttgatgctcaatgtttcc
tccatcgttcttccaatccctgtggagatgtcgggatctggttctggcttggcagatttt
ggctcaggttctgtcaatggtagcatctcaggggatcactctggcaacctgtctgggtct
ggaaacctccctggctcaggagacggacttacctctggggactcatctggatcgggagac
atatctggttctagggacatgtctggctcaggagctttgtctggctcaggagacctctct
ggttctgggcaccagtcttcctctggagactcatctggatctgggcaccagtcttcctcg
ggagactcatctggatctggacaccagtcttcctcgggagactcatctggttctgggcac
cagtcttcctcaggagactcatctggttctgggcaccagtcttcctctggagactcatct
ggatctgggcaccagtcttcctctggagactcatctggttctgggcaccagtcttcctca
ggagactcatctggttctgggcaccagtcttcctcaggagactcatctggatctgggcac
cagtcttcctctggagactcatctggatctggacacctggctggaagtacaagcacaggt
ggttctggatcaggtctcagtggagtaggatctggcatcacgttttttttctctggagct
gacaacattgtgtcagaagagggcacctcatcaggaggaccgcaagaagctggagaggga
ttcacagaaaattgtatcgtctcttcatcaggatcatggtctggatgttctagtggtgac
ctgtcaccgtctggatctggttctggcgctacaaagagtgaggatagcttggggggaagt
ggacatttctcaggcagcacatctggtttcacctcaggccaggatttatctggttttctt
tcaggatcatcatcaggaagtggagagtcaggagagctttctggaagtggagatctccaa
atcgtattggttgatgagaaactcgttcatgcttctactacccttaaagagaatgaactt
ggtgcgggtcctcttgtgttcagtggttctggagaccttttaggatcttcttctggaagt
ggattgtcaggagagctttctggaagtggagatctccagatcttacagattgatgaaaat
ctcattgatgaatctactgctcagaagggatatgaacttggcgcaggtccacatgtgttc
agtggttctggagaccattcaggattgggggtcttcagtggagaccacagtggttctgca
tctagaagtgaatctgagtttgtctctggtgtgatcctgatgggttcaggtttaatggaa
ctcactgtttcatcttctggagaacacaaggaggcatcagggattgtattctatagctct
ggacaaggaagtggtggacaaatatctggatttggaagctcaagttttctctctggttct
ggttctgagttgtctggatcagcagtttctggatcagggttctctgccagtggagaagaa
ggcagtgttaaactcctgacagatgatctaataaaagcacccagacagactgaagcgcca
caagagctgggacagggttcagttcagtacagtggagaagaaagtggaagcagcttctct
ggtggaagggtctttgacctctccacagctccaggagctccaacttcttctgtagcttcc
actgaagatctgtcagaggcagtgctgccctctccacctgctgaaccagtaccaacagaa
cctacaagactaccagaggaccatccaaatgaggctgaagaaactgaaaccttcagtgaa
acttatatgatgccaagttttgaaagaattcctgaaggactggtggctcctcctactgca
gctaaaccagcgtttgtggagacaccagccacagcaggagaggtcgaggtgtgccatccc
aacccttgtgccaatggagctacctgtgtggagagtgcagactctttcaaatgcttatgc
ctgcccagctacggagggaaacactgtaagattgaggagcagcagtgtgaagatggctgg
actaaatttcaaggaaactgttacctgcacatctctgacagaaaggattggcttggtgca
gagaatcactgccaaggcctagaggcacacctggtcagcatcatcacacccgaggagcag
cattttgtcaatgcatttgcaaatgactacaagtggatcggactgagcgacaaagcagtt
gaaagggactttcagtggactgatgggacaccaatgcaatacgagaactggaggccaaac
cagccagacaactacttcaactcaggagaagactgtgtggtaatggtctggcatgagaag
ggtcagtggaatgacgtgccctgtaactaccacctgccgttcacttgcaagaaaggacca
gtgtcatgtggggcgccacctgaagtggaaaatgctcacacatttggtgccaggaggctg
caatatcccgtcaactccatcattcgttatcagtgcaagccaggcttcagacagcgccat
cttcctgtggtccgctgccaagatgacgggcactgggaaaaacccagagtggagtgtact
gatgtgaaagccaggaagagaatacagcacaggagcagctgggatccagcagtcagcagc
acagagaaataa
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integrated database retrieval system
