Nothobranchius furzeri (turquoise killifish): 107382078
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Entry
107382078 CDS
T05163
Symbol
papd5
Name
(RefSeq) non-canonical poly(A) RNA polymerase PAPD5
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107382078 (papd5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107382078 (papd5)
03016 Transfer RNA biogenesis [BR:
nfu03016
]
107382078 (papd5)
Enzymes [BR:
nfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
107382078 (papd5)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107382078 (papd5)
Transfer RNA biogenesis [BR:
nfu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107382078 (papd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTPAP-like_central
PAP_assoc
NTP_transf_2
Polbeta
PAP_NTPase
TUTase
PAP-OAS1
Motif
Other DBs
NCBI-GeneID:
107382078
NCBI-ProteinID:
XP_015809551
UniProt:
A0A8C6NL42
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Position
sgr07:62536964..62569392
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AA seq
516 aa
AA seq
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MDPRIAWFQPEQRGPANNLWMQIWETTQGFGYLHVNNSYTTRAQTTPSVKAIANGAPGAV
LSCKNGTLKFHAGFGDFKTQGMSASIEDGEGTHQRDFIPLDSNHNNRATGRGGVGGVGQQ
QPGSGVPVQWRGLTEGHPNKRKRVNKASTFGFNSSILNTGCGSNTDRYEGYTGTPWKVRN
YSEGVVGLHEEIKDFYEYISPRLEEENMRLEVVDRIKGVIHDLWPSAEVQVFGSFSTGLY
LPTSDIDLVVFGKWETLPLWTLEEALRKRNIADENSIKVLDKATVPIIKLTDSFTEVKVD
ISFNVQSGVKAARLIKEFKEKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVS
FLQLHYREDVSSPNINYGVLLIEFFELYGRNFNYLKTGIRIKDGGSYVAKDEVQKSMMDG
YRPSMLYIEDPLQPENDVGRSSYGAMQVKQAFDYAYMVLSHAVSPMAKYYPNNENESILG
RIIRVTQEVDEYRDWIRKNWGTPSQNDSLNSMFFSL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggatcctagaatcgcctggtttcaaccagaacaacgtggaccagctaacaacctgtgg
atgcagatctgggagacgacacaaggattcgggtatttgcacgtaaataacagttacacc
accagagctcagaccacgccgagcgtcaaagcgatcgccaacggggcgccgggagccgtc
ctcagctgtaaaaacgggacacttaagttccacgcgggttttggagatttcaagactcag
gggatgtctgcttcaatcgaggacggggaaggaacgcatcagcgagactttataccacta
gacagcaaccataacaaccgagccacaggcaggggcggtgtcggcggagtggggcaacag
cagccgggcagcggggtacccgtgcagtggaggggactcacggagggacaccccaacaaa
aggaaaagagtcaataaagccagcacttttggattcaattccagcatcttaaacaccggc
tgtggctccaacacagatagatatgaaggttatacgggcacaccgtggaaagtcaggaac
tactctgaaggagttgttgggcttcacgaggagatcaaggacttctacgagtacatctcc
ccacggttagaggaggaaaatatgagactggaggtggtggacaggatcaaaggcgtcatc
cacgacctgtggcccagtgctgaggtccaagtgtttgggagtttcagcaccggcctttat
ctaccaacaagtgacatcgacctggtcgtctttgggaagtgggagacacttcctctctgg
acgctggaagaagctctccgaaagaggaacatcgcagatgaaaattccatcaaagtcttg
gataaagcaacggttcccatcatcaaactgaccgactccttcaccgaagtcaaagtggac
atcagcttcaacgtgcaaagtggagtcaaagccgctcggctcatcaaggagttcaaggag
aaataccccgtgttgccttacctggtcctggtgctgaagcagttcctcctgcagagagac
ctaaacgaggttttcactggtggaattggttcctacagtctctttctcatggccgtgagc
ttcctgcagcttcactacagggaggacgtgtccagtcccaacatcaactacggagttctg
ctgattgagttcttcgagctctacggccggaacttcaactacctgaaaacgggcatcagg
ataaaagatggcggctcctacgtcgccaaagacgaggttcagaaaagcatgatggacgga
tacaggccctccatgctctacattgaggaccctctgcagcccgaaaacgatgttggcagg
agctcgtacggcgccatgcaggtgaagcaggcgttcgactacgcctacatggtcctcagc
cacgcagtgtcacccatggccaagtactaccccaacaacgagaacgagagtatcctcggc
cggataatccgggtgactcaggaagtggacgagtacagggattggatccgaaagaactgg
gggaccccctctcagaatgactcacttaacagtatgttcttctctctctga
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