Nothobranchius furzeri (turquoise killifish): 107382143
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Entry
107382143 CDS
T05163
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03030
DNA replication
nfu03410
Base excision repair
nfu03420
Nucleotide excision repair
nfu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107382143 (rfc1)
03410 Base excision repair
107382143 (rfc1)
03420 Nucleotide excision repair
107382143 (rfc1)
03430 Mismatch repair
107382143 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nfu03032
]
107382143 (rfc1)
03400 DNA repair and recombination proteins [BR:
nfu03400
]
107382143 (rfc1)
DNA replication proteins [BR:
nfu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
107382143 (rfc1)
DNA repair and recombination proteins [BR:
nfu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
107382143 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
PTCB-BRCT
AAA_30
RuvB_N
Rad17
AAA_33
AAA_7
AAA_5
nSTAND3
AAA_17
TIP49
BRCT_2
AAA_14
AAA_16
AAA_18
AAA_19
SKI
NTPase_1
RNA_helicase
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
107382143
NCBI-ProteinID:
XP_015809628
UniProt:
A0A1A8A3T3
LinkDB
All DBs
Position
sgr08:15970405..15982578
Genome browser
AA seq
1159 aa
AA seq
DB search
MDIRRFFGPVSGKPVVQKPALPGNAKSTVKKKNNSASSDENEKKKKSTKIKNSKKEEHHK
GGGKKRKKHAVIESDSEEELEPVIKSKATTSKTAPPPKKDPVQYVSETDSDSDNFLSLKK
DSKPKQNGTAKSTKSEPEHACAESKERVKSPSQGKPGLKSLPGPTTPKSAPPPPKQTPTS
VLDFFGSGTIHRSDKKLVASTKRKTPTHDLDDLISDEEMARQLQMEEVRELEKQIHEDEG
FARTLAMLDAEPQAKKARKSSEEQPGLSTTPQKNRTGSVSASSSPLKTSQSSDVISPSPR
NTPVTVCSKVAMMKKRDEEKKEGPTRKTSMRNKSSPIKEPKTSPTSDKITPKPEVTPTEL
KKSPKKLENTSPDDAEKKKLHSSAYRNYLNREGPRALGSKDIPKGAENCLEGCVFVLTGV
LESMERDDAKSLIERYGGKVTGNISKKTSYLVQGRDGGVSKQEKAESLGTKILDEDGLLE
LIRTKPGKKSKYEITAEAESKASKTRSPPSHAEKSTPKAQKISPSKGNSRSPHTPSPSKT
GQAKGHVTRTSGYGTPTGRGSGRITQKELDLPSSSASEPSPPSMKGESLLWVDKYRPRSL
KAVIGQQGDQSCANKLLRWLQSWYQHHSGAGGSKPAAAKFSRFGGKDDGSGHKAALLSGP
PGVGKTTTAVLVCEELGYSFVEMNASCTRSKNSLKEVVAESLNNTSIEGFYKGTSQTVSS
KHVLIMDEVDGMAGNEDRGGVQELIALIKNTKIPIICMCNDRNHPKIRSLANYCFDLRFQ
RPRLEQIKGAMMSIAYKEGLKIPPPALNEIILASNQDVRQVIHNLSMWSAKDKVMTYDRC
KSDAANAHKDMKLGPFDVCRKVFISGEETARMSLIDKSDLFFHDYSLAPLFVQENYVHVR
PAAARGDMKSHLVLLSKTADSICDGDLVDRRIRSGQNWSLLPTQAIYASVIPGELMRGYM
SQFPVFPSWLGKNSSTSKHSRIIQELSSHMSLKTMGSRQAVNLDYLYYLRQILLHPLQKY
GAEGTGQAVQLLDDYQLIKEDVDSIMEISSWGGQPDPYSKLDSKVKAAFTRAYNREAHMT
PYALQAVKKGRRGGLGDLDVGGEDADQDGPGSEDDGEGVQTDAMIKQKKSKSAKESKKEK
KEDSGKGKGKGKGKGKAKN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcgattctttggaccagtgtcaggtaagccggtggtgcagaagccagcc
ctgcctggaaacgccaaatcaaccgtgaagaagaaaaataattcagcatcttcagatgaa
aatgaaaaaaagaaaaagagcacaaagatcaaaaactccaagaaagaagagcaccacaag
ggtggtgggaaaaaacgaaagaagcatgcagtgatcgagtcggactctgaggaagagctg
gagcctgtgatcaagtcaaaagcaacaaccagtaaaacggcaccacctcctaaaaaggat
cctgttcagtatgtctctgaaacagactccgacagcgacaacttcctgtccttgaagaaa
gactccaaacccaaacagaacggcactgccaaaagcacaaagtccgaaccagaacatgct
tgtgcagaaagcaaagagcgagtgaagtctcccagtcaaggtaaacctggtctgaaaagt
cttcctgggcctacaactcccaagtccgccccacctccacccaaacagacccccacttcc
gtactcgacttctttggcagcgggacgattcaccgctccgacaagaagctggtagcaagc
accaaacgcaagacaccgacccacgacttggatgacctgatcagtgatgaagaaatggct
cggcagctgcagatggaagaagtgagggagttggaaaaacagatccatgaggacgagggg
tttgctagaactctggccatgctggatgcagagccgcaggctaagaaagctcgcaaaagc
tcagaggaacaaccaggtctgagcacaacgccccaaaagaaccgcacaggttctgtcagc
gcatcaagcagcccgctgaagaccagtcagagcagcgatgtgatcagtccatcgcccaga
aacaccccagtcacggtctgctccaaagtggccatgatgaagaagagagacgaggagaag
aaggaaggaccgacgaggaaaacatccatgagaaataaaagttctcccataaaggagcca
aagacatctccaacttcagacaagatcacaccaaaaccagaagtgacgccaacagaactg
aaaaaatctcccaagaaacttgagaacacaagtcctgacgatgcagagaagaagaagctg
cactcttcagcttacaggaactatctcaacagagaagggccacgagcgctggggtccaag
gacatcccaaagggtgcagagaactgtctggagggctgtgtgtttgtgctgacgggggtc
ctggagtcgatggagagagacgacgccaaatctctgatcgaacgctatggaggcaaagtg
acgggcaacatcagcaagaagaccagctacctggtgcagggcagagacggcggcgtgtca
aagcaggagaaggcggagagtctaggcaccaaaatcctggatgaggatggtttgttggag
ctgatcagaaccaaaccagggaagaagtcaaagtacgagattactgctgaggctgagagc
aaagcctcaaagaccaggtctccacccagccatgccgaaaagagcacccccaaggctcag
aagatctccccctctaaaggtaactccaggtccccccacaccccaagtccatctaagact
ggacaggccaaaggtcacgtgaccaggaccagcggttacggcactccaacagggagagga
tcaggtcgcatcacccagaaggagctggaccttccttcctcctcagcgtcagagccctca
cctccatcaatgaagggggagagtcttctgtgggtggacaagtatcgtccacgctctttg
aaggctgtgattggccagcagggggaccagagttgtgccaacaagctgctccgctggcta
cagagctggtaccagcatcatagcggcgccggaggcagcaagccagcagcagccaagttc
agtcgatttggagggaaggacgatggatcaggacacaaagctgctctgctgtctggacca
ccaggggtggggaagaccaccaccgctgtcctggtctgtgaggagttgggctacagcttt
gtagagatgaacgccagctgcacacgcagcaaaaacagcctgaaggaagtcgtagccgag
tcgctgaacaacaccagcatcgagggcttctacaaaggaacgtctcagaccgtgagcagc
aaacacgtcctgatcatggatgaggtggatgggatggctggtaatgaggaccgagggggg
gtccaggagctgattgctttgataaaaaacaccaagattcccatcatctgcatgtgcaac
gaccgcaaccacccaaagatcagatcgctggccaactactgcttcgaccttcgcttccag
aggccacggctggaacagatcaagggagccatgatgtccatcgcttacaaggaaggactt
aagatcccacctccagctcttaatgagatcatcctagcctccaaccaggatgtccgacag
gtgattcacaacctgagcatgtggtcggccaaggacaaggtgatgacgtacgacaggtgc
aagtccgacgcagcaaatgcccacaaggacatgaagctgggcccttttgacgtgtgcagg
aaggtgtttatttcaggggaggagacggcccgcatgagcctcatcgacaagtctgacctg
ttcttccacgactactcgttggcgcctcttttcgtccaggagaactacgtgcacgttcgt
cccgccgcagctcgcggggacatgaagtcccacctggtgctgctcagtaagactgctgac
tccatctgcgacggcgacctggtggacaggcggatccgatcagggcagaactggtccctg
ctacctactcaagccatctacgccagcgtaattccaggagagctcatgagaggctacatg
tctcagttcccagtcttccctagctggctcgggaaaaactcctccaccagtaaacattcc
cgcatcattcaggagctgtcctctcacatgagtttaaagacgatgggcagcagacaggcg
gtgaacctggactacctctactacctccgacagattctgctgcatcctctgcagaagtac
ggggcggagggcaccgggcaggctgtgcagcttctggatgactaccagctcatcaaggag
gatgtggacagcatcatggagattagttcctggggtggtcagcctgatccgtattctaaa
ctggactccaaggtgaaggcagcgttcacacgggcgtacaacagagaggctcacatgacg
ccgtacgctctgcaagctgtgaaaaaaggccggcgtggtggtttgggggacttggatgtt
ggaggggaggatgcagaccaggatggaccaggatctgaggatgacggagagggggtccag
accgatgctatgatcaaacagaagaagagcaaatccgctaaagagtctaaaaaggagaag
aaggaagactctggcaagggcaagggcaaaggaaaaggaaaaggcaaggctaaaaactga
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integrated database retrieval system
