Nothobranchius furzeri (turquoise killifish): 107382277
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Entry
107382277 CDS
T05163
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107382277 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nfu03021
]
107382277 (taf5l)
03036 Chromosome and associated proteins [BR:
nfu03036
]
107382277 (taf5l)
Transcription machinery [BR:
nfu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
107382277 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
107382277 (taf5l)
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
107382277 (taf5l)
STAGA complex
107382277 (taf5l)
TFTC complex
107382277 (taf5l)
SAGA complex
107382277 (taf5l)
SLIK complex
107382277 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
TFIID_NTD2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
NBCH_WD40
WDR90_beta-prop_4th
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
RMC1_N
Beta-prop_HPS5
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_WDR19_1st
PEP5_VPS11_N
Nbas_N
WD40_like
Beta-prop_IP5PC_F
WD_LRWD1
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
107382277
NCBI-ProteinID:
XP_015809853
UniProt:
A0A9D2Y378
LinkDB
All DBs
Position
sgr08:complement(7724722..7732157)
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AA seq
600 aa
AA seq
DB search
MKRVRAEQIQYAVTQYLKRRQYVDTDVSSKGAKLLMSAEEMAASLTAVQAESGYANVVSA
APCQCDPQQYETQYSRLRSFLSETEMSWAQEVSSLLYPLFVYLHLDMVRCGLKGAMDSFY
TRFHNTFLSDSEQRVVIEQLRHVLTVQEVAANPRLRMFLEHKYVVHLTEPAYSYLLRYLQ
SEENSALCRVLSTHLEVEVTATTRTDYQLYEAAGGSVATSNSSSRAGVDRAEGGEVIEVP
AGTPQNEVALKNLQDCIKKVSEGPPSLTTICFYAFHHTEQLLNTAEVSPDSRLLAAGFDS
STVKLWSLRARKLKAKPHQADVSRIHLACDILEEKVDEEDSSGSEIKTLRGHNGSVYRTA
FLTDSSGLLSCSEDTTIRYWDLGSFTNTVLYQGHAYPVWDLDVSPCSLYFASSSNDRTAR
LWTFSRTYPLRLYAGHLSDVDCVRFHPNSNYLATGSSDKTVRLWSTQQGSSVRLFTGHRG
PVLSLAFSPNGKYLASAGEDQRVKLWDLASGTMFKDLRGHSDSVTSLSFSPDSSLVASSS
MDNSVRVWDICNSHTGMSPDGSSSELVGMYTGNSSNILNVQFMSCNLLLVTAAAQEKAEP
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgggttcgtgctgagcaaatccagtacgccgtgactcagtacctgaagaggagg
caatatgtggacaccgacgtgtcttcgaaaggagccaaactcttaatgtcagctgaagag
atggccgccagcttgacagcagtgcaggctgagtccggttacgccaacgtagtttctgct
gcgccctgccagtgtgacccgcagcagtatgagacgcagtactcaaggctgcgctccttt
ctctcagaaacggaaatgtcctgggctcaggaggtgagcagccttctctacccactcttt
gtctacctccacctggacatggtgcgctgtggtctgaagggagcgatggatagtttttac
actcgctttcacaacacttttctttcggatagcgagcagcgtgttgtgatagagcagctc
cgccatgttctcactgtacaggaggttgcagcaaaccccagattgagaatgtttctggaa
cacaagtacgtggttcacctgacagaaccggcctatagctacctgctgcgttacctgcag
agtgaggaaaacagcgccctctgcagggttctcagcacacacctagaggtggaggtcacc
gccacaacacgtacagactaccagttgtacgaagccgctggtggctccgtggccacgtca
aactcttcctcccgggcaggtgtagatagagcagaaggtggagaggtgatagaggttcct
gccgggacgccgcaaaacgaggtggccctcaagaatctacaggattgcattaaaaaggtc
agtgaaggcccaccctctctcaccaccatctgtttttatgccttccatcatacggagcag
ttgttgaacaccgcggaggtgtcacctgacagccggctgttggctgcaggcttcgacagc
tccacagtcaaactgtggagcctccgagctcgaaagctgaaggccaaaccgcatcaggct
gatgtgtcccgcatccacctggcatgtgatattctagaggaaaaagtggatgaggaggac
agcagtggcagtgagataaagacgttgaggggtcacaatggttccgtgtatcgtacagct
ttcctgaccgatagctcaggcctcctctcttgctctgaggacacgaccatccgttactgg
gatctgggcagcttcaccaacacggtgctgtaccagggtcacgcctacccagtgtgggac
ttggatgtcagcccctgcagcctgtattttgctagcagctcaaatgatcgaactgctcgg
ctctggacgttttctcgcacctatccgctgcgtctttacgctgggcacctctctgatgtg
gactgcgtcaggtttcaccccaactcgaactaccttgccactggctcttcagacaagacg
gttcgactgtggagcacccagcagggttcgtccgttcgcctcttcacgggccaccgcggc
ccggtgctgtccctcgcattctcgccgaacggaaagtacctggcgtctgctggagaggat
cagcgggtgaaactttgggacttggcatcagggacgatgttcaaagacctgcgtggccat
tcggacagtgtcaccagcttgtctttcagcccggacagcagcctggtggcatcgtcctcc
atggacaactccgttcgtgtgtgggacatctgcaactcccacactgggatgtctcccgat
ggctcgtccagtgaactagtggggatgtacactggaaacagcagcaacattttaaacgtc
cagttcatgtcctgcaacctgctccttgtgacggcagcagcccaggagaaggctgaaccg
tag
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