Nothobranchius furzeri (turquoise killifish): 107382295
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Entry
107382295 CDS
T05163
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107382295 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nfu03041
]
107382295 (ddx5)
03009 Ribosome biogenesis [BR:
nfu03009
]
107382295 (ddx5)
Enzymes [BR:
nfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107382295 (ddx5)
Spliceosome [BR:
nfu03041
]
Complex A
U1 snRNP components
U1 related factors
107382295 (ddx5)
Complex B
107382295 (ddx5)
Ribosome biogenesis [BR:
nfu03009
]
Eukaryotic type
Pre-60S particles
Helicases
107382295 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
107382295
NCBI-ProteinID:
XP_015809881
UniProt:
A0A9D3BNT2
LinkDB
All DBs
Position
sgr08:complement(6708069..6718492)
Genome browser
AA seq
634 aa
AA seq
DB search
MPGFADRDRGRDRGYGGGPPRFGGGGGGGGNRGGPLLGKFGNPGERLRKKHWNLDELPKF
QKNFYQEHPDVTHRPLQEVDQYRRNKEVTVKGRDCPKPIVKFHEAAFPNYVMDVIVKQNW
TEPTPIQSQGWPIVLSGKDMVGIAQTGSGKTLAYLLPAVVHIQHQPFLEHGDGPICLVLA
PTRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC
GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL
KDYVQINIGALQLSANHNILQIVDVCNDLEKEDKLIRLLEEIMSEKENKTIIFVETKRRC
DELTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRFGKAPILIATDVASRGLDVEDVKFVI
NYDYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAGDLISVLREANQAINPKLIQM
AEDRGGRGRGGRGGYKDDRRDRYSGGGRSNFGGSGFRDRDHDRGFGNGPKTTFGGSKAQN
SGNYGGNSGNSCGSYGNNNYNNSNGQGSFSGPPNQGGFGNQGFQAPPQFGGMQRAAQNGV
NHPPFPFNAQPPPPQNQQPPPPMVPYPIPPPFPQ
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatttgcagacagagaccgcggcagagatagagggtatgggggtggcccccct
cggtttggtggcggtgggggaggaggcggcaacagaggaggacctctgctgggaaagttt
ggaaaccctggtgagaggctgcgcaagaagcactggaaccttgatgaactaccaaaattt
caaaagaatttctaccaggaacacccagatgtcacacacagaccactgcaggaggttgac
cagtaccgcagaaacaaagaagttacagttaaaggcagagattgtcccaaaccgattgta
aaattccatgaagctgcttttcccaactacgtcatggatgtcattgtcaaacagaactgg
actgaaccaactccgatccagtctcaggggtggcccattgtcctgagtggaaaagacatg
gtcggcatcgctcaaacggggtctgggaagactttggcatatcttctgcctgcagtcgtt
cacatccaacatcagcccttcttggagcacggagacgggcctatttgcttggtgctggca
ccaacccgtgagctggctcagcaggtgcaacaggtggctgctgagtacggcagggcctcc
cgtctcaagagtacatgcatctatggtggtgctcccaaaggaccacaaatccgggacctt
gagaggggtgttgagatttgcatcgccaccccaggtcgcctcattgatttcctggaatgt
ggtaaaactaatttgcgtcgttgcacctatctagtgctggatgaagctgaccgcatgctg
gacatgggctttgaacctcagatccgcaagatagtggatcaaatacggccagaccgtcag
actctgatgtggagtgccacctggcctaaagaagttcgtcagctggctgaggacttcttg
aaggattacgtccagatcaacattggcgccctgcagctcagcgccaatcataacatcctg
caaatagtagatgtttgcaatgacttagaaaaggaagacaaactgattcggttgctggag
gagatcatgagtgaaaaggaaaacaagaccatcatttttgtggagaccaaaaggcgttgt
gatgagctcaccaggaggatgagaagagacggatggcctgcaatgggaatccatggagat
aagagccagcaggagagggactgggtccttaacgagttcagatttggcaaagctccgatt
ctcattgctacagacgtggcctcccggggcttagatgtggaggatgtgaaatttgtcatc
aattatgactaccctaactcctctgaggattatatccaccgcattggacgcacagcccga
agtcaaaaaacgggcacggcctacaccttcttcacccccaacaacatgaaacaggcaggt
gacctgatctctgtgctccgtgaagccaaccaggccatcaaccccaaactgatccagatg
gctgaggacagaggaggtcgcggtagggggggaagaggtggctacaaggatgaccgtcgc
gataggtattctgggggtgggaggagtaattttggcggtagtggctttagagacagggac
catgacagaggtttcggcaatgggccgaagaccacatttggtggcagcaaggcccaaaat
agtggcaattatggtggcaacagtggtaactcttgtggtagctatggcaacaataactac
aacaacagtaatggacagggtagttttagtggtccacctaaccaaggtggctttgggaac
cagggcttccaagcccctcctcaatttggtggcatgcagagggctgcacagaatggtgtt
aatcatccaccatttccttttaacgctcagccacccccgccacagaaccagcagccccct
ccaccaatggtgccctacccaattccaccaccgtttccacaataa
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