Nothobranchius furzeri (turquoise killifish): 107383302
Help
Entry
107383302 CDS
T05163
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04510
Focal adhesion
nfu04512
ECM-receptor interaction
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107383302 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107383302 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
107383302 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107383302 (col1a2)
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107383302 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
107383302
NCBI-ProteinID:
XP_015811330
UniProt:
A0A1A8UMG6
LinkDB
All DBs
Position
sgr09:complement(8260399..8280808)
Genome browser
AA seq
1352 aa
AA seq
DB search
MLSFVDTRILLLLAVTSYLASCQSSGPRGDKGPRGDRGFPGPNGKDGKPGLPGPPGPPGP
PGLGGNFAAQYDGSKSSDPGPGPMGLMGPRGPPGPPGPPGPQGHTGHAGEPGEPGQAGAV
GPRGPPGPPGKSGEDGNNGRPGKPGDRGTPGTQGARGFPGTPGLPGMKGHRGYTGLDGRK
GEPGAAGAKGENGAHGAAGSPGLAGQRGQAGERGRPGPAGPTGARGADGNVGPAGPAGPL
GAAGPPGFPGGPGPKGEIGPAGSTGPSGPQGPRGEPGPNGAVGPVGPAGNPGANGLNGAK
GAAGTPGPAGAPGFPGPRGGPGPQGPQGAAGPRGLSGDPGPQGVKGDTGPKGEPGNSGPQ
GPPGQQGEEGKRGPTGEIGASGPAGSRGARGTPGSRGLPGSDGRTGPIGMPGARGATGNA
GPRGPPGDAGRVGENGPAGLRGLPGSPGSSGPPGKEGPSGPAGQDGRSGPPGPTGPRGQP
GNIGFPGPKGPSGEPGKPGEKGNAGPTGLRGPPGPDGNNGATGPMGAAGGPGEKGEQGPA
GAPGFQGLPGPAGIVGEAGKPGDRGIPGEQGASGPAGVKGERGNPGVAGAAGPQGVMGAR
GPAGAAGPDGGKGEPGAAGAAGAPGHQGPAGMPGERGAAGTPGPKGEKGETGHRGPDGNS
GRDGARGPAGPPGPPGPTGANGDKGESGSFGPAGPAGARGPSGERGEVGPAGPPGFAGPP
GNDGQTGARGERGPAGGKGETGPAGPAGPAGQSGPAGPSGPAGPAGARGETGPAGMTGQP
GAAGRVGAPGPAGIVGPPGFSGPAGKDGPRGLRGDPGPSGPSGEQGIVGPPGPAGEKGPS
GESGPAGPPGAPGTTGPLGLQGFVGLPGARGDRGAPGGPGALGEPGRVGPPGPAGARGPS
GNMGMAGMTGPQGEAGREGSPGNDGPPGRAGAPGFKGDRGEPGSPGALGLAGAPGPAGPS
GAAGRPGNRGEAGPSGPSGIAGPAGARGAPGPAGPRGEKGVAGERGERGMKGLRGHPGLQ
GMPGPSGPSGDTGSAGPVGHSGPRGPAGPNGPPGKDGRSGGHGSMGAPGARGPPGYSGPV
GPAGPPGLPGPPGPSGGGYDVSGYDEYRADQPALRAKDYEVDATIKSLNTQIDNLLTPEG
SRKNPARTCRDIRLSHPEWSSGFYWIDPNQGSINDAIKVFCDFTTRETCIYAHPESIARK
NWYRSTETRKHVWFGETINGGTEFTYNDETLSSQSMATQLAFMRLLSNQASQNITYHCKN
SVAYMDGESGNLKKAVVLQGSNDVELRAEGNSRFTFSVLEDGCTTHTGEWSKTVIEYRTN
KPTRLPILDIAPLDIGGADQEFGLDIGPVCFK
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacccggattctgttgctgcttgcagtaacttcatacctagca
tcatgtcagtcatcgggtccccgaggagacaaaggacctcgaggtgacaggggttttccc
ggcccaaatggaaaagatggtaaacccggactccccggcccccctggcccccctggcccc
cctggactcggaggaaactttgctgctcagtatgatggttcaaagtcctctgatcccggc
cctggacccatgggtttgatgggacccagaggcccccctggaccccctggaccccctgga
cctcagggacacactggacacgccggtgagcctggagagcccggtcaggctggcgctgtt
ggacctcgtggaccccctggacctcctggcaagtctggagaagatggtaacaacggcaga
cctggaaaacccggagacagaggtacccccggcactcagggagctcgtggattccccgga
accccaggacttccaggaatgaaaggacacagaggttacactggtctggatggacgcaag
ggagaacctggtgctgctggtgccaaaggagagaacggtgcccacggagctgctggaagc
cctggattggctggtcaacgtggtcaggctggtgagagaggtcgccccggccctgctggt
cccactggtgctcgtggtgctgatggcaacgttggacccgccggcccagctggtcctttg
ggtgctgctggtcccccaggcttccccggcggtcctggacccaagggagaaattggacct
gctggatccactggcccatctggaccccagggaccaagaggagagcctggacccaatggt
gccgttggcccagttggccccgctggcaaccctggagctaatggcctgaacggagccaag
ggagctgctggaacccctggtcctgctggagctcctggcttccctggaccaagaggagga
cctggaccccagggacctcagggtgctgctggaccaagaggcctttctggtgatcctgga
ccccagggagtcaagggagacactggtcccaaaggagagcctggtaattctggacctcaa
ggaccccctggacagcaaggtgaggagggcaagagaggacccactggtgagattggtgca
tctggacctgctggcagccgtggagcaagaggcactcctggaagccgtggcctgcctggc
tctgatggacgtactggacccattggtatgcctggtgctcgtggtgctactggtaacgct
ggacctcgtggaccccctggagatgctggtcgtgttggtgagaatggcccagctggtctc
agaggtctcccaggaagccctggaagttccggacccccaggaaaagagggaccttctggt
cctgctggacaagatggccgctctggaccacctggcccaactggcccaagaggccagcct
ggaaacattggtttccctggacccaaaggaccttctggcgagcctggtaagcccggagag
aaaggaaacgctggtcctactggactgagaggaccccctggacctgatggcaacaatgga
gccactggccccatgggcgctgctggtggtcctggtgagaagggtgaacagggaccagct
ggagctcctggtttccagggtctacctggacctgccggaattgttggtgaggctggcaag
cctggagacagaggaatccctggagagcagggagcttctggacctgccggtgtcaaggga
gagcgtggtaatccaggtgttgctggagcagctggccctcagggagtcatgggagcacgt
ggacctgctggagctgctggacctgatggtggcaagggagagcctggtgctgctggagct
gctggtgctcctggacatcagggacctgctggtatgcccggagagcgtggagctgctggt
actccaggacccaagggagagaagggagagactggacaccgtggccctgatggaaattca
ggaagagatggcgctcgtggccctgctggacctcccggaccccctggacccactggagca
aatggagataagggtgagagcggttcctttggacctgctggccctgccggagctcgtgga
ccctctggagagcgtggagaggttggacctgctggaccccctggatttgctggaccccct
ggtaatgacggtcagactggagcaagaggagagcgtggacctgctggaggaaagggagag
actggccccgctggacctgctggccctgctgggcagtctggacctgctggtccctctggt
cctgctggacctgctggtgctcgtggagagacgggtcctgctggtatgactggtcagcct
ggtgctgctggtagagtcggtgctcctggccctgctggtattgttggacctcctggcttc
tctggtcccgctggcaaagatggaccccgtggtctccgtggtgatcctggtccctctggt
ccttctggagagcagggaattgttggaccacctggcccagctggagagaagggaccctct
ggagagtctggccctgctggacctcctggtgctcctggaaccactggacctcttggactt
caaggatttgttggtctgcctggtgctagaggagatcgtggtgcacctggtggtcctggt
gccttgggagagcctggtagagttggacctcctggcccagctggagcccgtggcccctct
ggcaacatgggcatggctggtatgactggacctcagggagaggctggacgtgagggtagc
cctggtaacgacggaccccctggccgtgctggtgcccctggattcaagggagaccgtggt
gagcctgggtctcctggtgccctgggacttgctggtgcccccggacctgctggacccagt
ggagctgctggaagacctggaaaccgtggagaggctggcccatcaggaccttctggaatt
gctggccctgctggagctagaggcgcccctggacctgctggaccccgtggtgagaaggga
gttgctggagaaagaggcgagagaggcatgaagggtctgcgaggacaccctggtctccag
ggaatgcctggaccttctggaccttctggtgacactggatctgctggaccagttggacac
agtggacccagaggacctgctggacctaacggaccccctggtaaggatggtagatctggc
ggccatggttctatgggtgctcctggtgctcgtggacctccaggatattctggaccagtg
ggtcctgctggacctcccggtctgcccggacctcctggcccatctggtggtggatatgat
gtctctggatacgatgagtacagagccgatcagcctgccctgagagccaaggactatgaa
gtggatgccaccatcaagtccctcaacactcagatcgacaacctgctgacacccgaggga
tccaggaaaaatcctgcccgcacctgtcgtgacatcagactcagccaccccgaatggagc
agtggattctactggattgaccctaaccagggctccatcaacgatgccatcaaggttttc
tgtgactttacaactcgcgagacctgcatctacgcccatcccgagagcattgcacgcaag
aactggtacagaagcacagagaccaggaagcacgtctggttcggagagaccatcaacggt
ggcacggagttcacctacaacgacgagaccctcagctcacagagcatggctacccagctg
gctttcatgcgcctgctgtccaaccaggccagccagaacatcacctaccactgcaagaac
agcgttgcctacatggatggtgagagcggcaacctgaagaaggctgtggtactccagggc
tccaacgacgtggagctcagagctgagggcaacagccgcttcaccttctccgtgctggag
gatggttgcactacacacactggtgaatggagcaagacagtgattgagtacagaacaaat
aaaccaactcgcctgccaatcctcgacattgcacctttggacattggtggagctgatcag
gagtttggtttggacattggcccagtctgtttcaaataa
DBGET
integrated database retrieval system
