Nothobranchius furzeri (turquoise killifish): 107383397
Help
Entry
107383397 CDS
T05163
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04510
Focal adhesion
nfu04512
ECM-receptor interaction
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107383397 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107383397 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
107383397 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
nfu00535
]
107383397 (col9a2)
Proteoglycans [BR:
nfu00535
]
Extracellular matrix (ECM) proteoglycans
Others
107383397 (col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
107383397
NCBI-ProteinID:
XP_015811471
UniProt:
A0A1A8A0E7
LinkDB
All DBs
Position
sgr09:complement(13981804..14016605)
Genome browser
AA seq
691 aa
AA seq
DB search
MAFLFASLKTWILLQTLCLAVAQVRGPPGPQGLPGPLGPSGTPGSDGIDGEKGRPGPPGP
PGQKGEPGEPGRDGPPGKNGIDGLIGEKGDRGPVGSPGPKGQPGPSGEPGPPGLGLPGLA
GTPGPIGLPGQIGPPGPKGILGPPGPPGIPGPPGKPGPPGKFIGVEEGSADFQCPLNCPS
GPKGPQGLQGVKGHKGRAGVLGDPGSIGKSGPKGEVGISGEQGIPGPPGPMGLRGYPGMM
GPKGEAGPRGYKGINGPVGIPGPPGEEGPQGPPGEQGDKGNKGSQGIQGPQGAVGKKGEN
GLPGIDGKDGTPGVPGIKGAPGQSGLPGPPGPQGTAGLPGSPGAKGEAGVKGEPGPRGHA
GRAGAPGPLGEPGIPGEAGMEGVPGPKGDRGQRGAVGSQGEVGMPGSKGERGPTGVPGPQ
GLTGTQGDKGFQGKVGAKGDIGDPGVEGLAGEKGEKGISGEPGPKGQQGIRGDPGHNGPT
GDSGKPGDQGPPGVPGPRGLNGERGVPGMPGIQGAAGRDTSDQHIVEVVLKMLQEKLAEV
AVSAKRAVLGGAGVMGPPGPPGPPGSPGSQGPHGLPGARGIPGIIGAAGQIGNTGLKGKR
GAKGVRGDPGKPHPGQPGPPGIQGAPGVDGVARDGRPGERGPQGSAGEAGQPGKAGPPGL
PGFCEAAMCLAASAYTSPRLQEAGTIKGPSV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcttttctctttgcctcactgaagacctggattctactgcagaccttgtgcctggct
gtggctcaagtgagaggtccacctggacctcaaggcctaccaggtccactgggcccttct
ggtactcctgggtcagatggcattgatggggagaaaggacgtcctggcccacccggacca
ccagggcaaaagggtgagccaggagagccaggtcgggatggacctccaggaaagaatggc
attgatggcttgattggagaaaaaggtgatcggggtccagtcggtagtcctggtccaaag
ggtcagccaggtccaagcggagagccaggacctccaggactcggccttccaggtctggct
ggtactccaggaccaattggtcttccaggtcagattggaccacctggcccaaagggtatt
ctaggaccacctggacctccaggaatacctggacctcctggcaaaccaggtcctccagga
aagtttattggtgttgaagaaggaagcgcagatttccagtgtcctctcaactgtccctcc
ggacctaaaggcccacaaggactgcagggggtaaagggacacaaagggcgtgctggtgtt
ctcggggatcccggcagcataggcaaatcgggacctaaaggagaagttggcatctccggg
gagcagggaatcccagggcctccgggcccaatgggtctgagaggttatccaggaatgatg
ggtcctaaaggagaggctggacctcgtggttacaaaggcatcaacggacctgtaggaatt
cctggccctcctggtgaggagggacctcagggaccacctggagagcaaggagacaaggga
aacaaaggcagccaaggcattcaaggtccacaaggtgctgttggcaaaaaaggagaaaat
ggtcttccaggtattgatggaaaagatggcactcccggtgttcccggaattaaaggtgct
cctggtcagtctggactgcccggtcctcctggtccccaggggacagcaggattacctggc
tccccaggagcaaagggagaagcaggagttaagggcgagcctggtcctaggggtcatgct
ggcagggctggtgctcctggacctttgggagagcctggtattcctggtgaggctggaatg
gaaggagtccctggacccaagggtgacagaggccaaagaggagcagttggctcacaggga
gaagtcggcatgcctggaagcaagggagaacgaggacctactggtgtcccaggaccacag
gggcttactggaactcagggagacaagggcttccaaggcaaagtcggtgcaaagggggac
ataggcgatcctggcgttgagggattggctggtgagaaaggcgaaaagggcatatcggga
gaacctggaccaaaaggacagcaaggaatcaggggtgaccctgggcacaacggacccact
ggggactcgggtaaaccaggagaccaaggaccacctggagtacctggtccaagggggctt
aatggagagcgaggagtacccggcatgcccggcatccagggtgcagctggacgcgatacg
tcagaccagcatattgttgaagtggttctaaagatgctgcaggagaagctagcagaagtg
gcagtgagtgccaagagggctgtgcttggtggggcaggtgtaatgggaccccctgggcct
cctggacctccaggatcacctggttcccagggtccacatggtttaccaggtgctcgtggc
attcctggtattattggagcagctggacagattggaaacacaggacttaaaggaaagaga
ggggcaaagggagttagaggagatccaggtaaacctcacccaggacagccaggacctccc
ggaatacaaggtgctcctggtgttgatggtgttgctcgagatggcagacctggagagaga
ggacctcagggatcagctggagaggctgggcaacccggtaaggcagggcctccagggctt
ccagggttctgcgaggcagcgatgtgtctggctgcatcggcatacacctcgccgagatta
caggaggcgggaacgatcaaaggacccagtgtttag
DBGET
integrated database retrieval system
