Nothobranchius furzeri (turquoise killifish): 107383561
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Entry
107383561 CDS
T05163
Name
(RefSeq) collagen alpha-1(XI) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107383561
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107383561
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107383561
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
107383561
NCBI-ProteinID:
XP_015811770
UniProt:
A0A1A8ADL8
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All DBs
Position
sgr09:complement(26988132..27090897)
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AA seq
1825 aa
AA seq
DB search
MEMQRWTIRWKTKRRLLDSTQAAVVTLLLFLQTSCVRAAEPVDVLKVLDFQSSPEGVRKT
PGFCTVRRGSKPDIAYRVGKNTQISAPTKQLFPGGIFPEDFSILFTIKPKAGLQSFLLSV
YNQQGLQQLGVEVGRAPVFMYEDQHGKPPPEEYPLFRSINLADGKWHRVAISVEKKSVTI
IVDCKKKVTKPLKRSDQAVVNTEGITVFGTRILDDEVFEGDIQQLLIVADPRAAYDYCEL
YSPDCETPSHHDIPQAQEPEDVYTNYEYGDVYDYKDYSEGEITPHIPPTAPPKTETNAGD
DYYNGEYEYTKLDGSQPETPTESTAQGQSYEGEVEYDYITGVDEVGVDPTVPAKAAVPED
TNKSVDPTTDQYEFKEYNVKEYDTKEFEGKTYDYGEYDEYVPTDVKPTTETYEEKFGLGV
PAETDIRESAVIGGQSYLGQKGEKGEPAVIEPGMLLEGPQGVPGPAGVPGTPGLQGPPGT
PGDPGERGPPGRPGIPGSDGVPGPPGTILMLPFRAGGEAHKGPVITAQEAQAQAILSQAR
LTMRGPPGPAGMAGRSGLVGPPGAHGLKGDSGETGPQGPRGLQGPTGPPGKAGKRGRNGA
DGARGMPGEAGAKGDRGFDGLPGLPGEKGHRGEHGSTGPPGPPGEDGPRGEDGQVGQRGL
AGDSGPRGLLGPRGSPGPSGQPGLSGLDGQAGPKGNMGPQGEPGPPGQQGLPGPHGLIGP
QGPIGPPGEKGPQGKQGLAGLAGADGPPGHPGKEGPPGEKGSVGFPGPVGSIGYPGPRGV
KGAEGIRGLKGDKGEKGEDGFPGFKGDMGIKGDKGEVGVNGPRGEDGPEGPKGKSGPSGE
TGPLGLAGEKGKLGVPGLPGYPGRQGPKGSNGFPGFPGANGEKGARGIAGKSGPRGQRGP
TGPRGGRGARGPTGKPGAKGTSGSDGPPGPPGERGPQGPQGPVGFPGPKGPNGPAGKDGL
PGHPGQRGETGFQGKNGPPGPVGVVGPQGPTGETGPSGERGHPGSPGPPGEQGLPGAAGK
EGGKGDPGLQGPGGKVGPPGLRGFQGTRGLPGAMGPAGLKGGEGPQGPPGPVGSPGERGP
AGPGGPIGQTGRNGPQGPPGPAGEKGGPGEKGPMGPAGRDGIQGPVGLPGPAGAQGPPGE
DGDKGEVGGPGQKGSKGDKGESGPPGPTGVQGVVGAPGPAGSDGEAGPRGQQGMFGQKGD
EGPRGFPGLPGPVGLQGLPGPPGEKGENGDVGAMGPPGPPGPRGPQGPSGADGAQGPPGG
IGSMGAVGEKGETGEAGNPGPPGEPGIGGPRGETGEKGETGPPGAAGPAGARGPPGDDGP
KGNPGPVGFPGDPGPPGEPGAAGLDGLPGDKGDDGEAGQPGPPGPSGEAGVPGPPGKRGP
LGQAGQEGRQGEKGSKGESGAEGPVGKTGPVGPQGPPGKAGAEGLRGIPGPVGEQGLPGA
SGQDGPPGPIGPPGLPGMKGDSGFKGEKGHPGLIGLIGPPGEPGEKGDRGLPGPQGSAGG
KGDAGLGGANGPLGPPGPPGLPGAQGQKGSKGSVGSAGQKGDPGLVGQPGPPGPPGDIIQ
SLPIHQPSKKSRRQADTQGDEALADYGIGLGTEGMEDVFGSLNNLKQDIEHMKFPMGTQD
NPARTCNDLHLSQPDFPDGEYWIDPNQGCIGDAIKVFCNFTAGGETCIYPDKKSTGVRIS
NWPKESPGSWFSEFKRGKILNYVDMAENTINMVQITFLKLLSSSARQNFTYICHQSVAWY
DAKADSYDKALRFLGSNDEEMSYDNNPFIKPLMDGCSLKQGYSRTTLEINTPRIDQLPII
DVMLNDFGGTNQRFGFEVGAVCFLG
NT seq
5478 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaagatggaccatcaggtggaaaacgaaaaggcgtctattggattccacg
caagccgctgtggtcacgttacttttattcctacaaacgtcctgcgtcagagcagctgaa
ccagtggatgtgctaaaagtgctagacttccagagttcccctgaaggagtacggaaaaca
ccgggtttctgcacagtccggagaggatccaaacctgacatagcttacagagtgggaaaa
aatactcagatcagcgcgccaaccaagcagctcttcccaggggggattttcccagaagac
ttctctattctcttcaccatcaaacccaaggctggacttcaatccttccttttatcagtt
tacaaccaacaaggccttcagcagctcggggtggaggtgggtcgcgctcctgtcttcatg
tatgaggaccagcatggcaaaccacccccagaggagtaccctttgttccgctccatcaac
ctcgctgatggcaaatggcacagagtcgctatcagcgtggagaagaaaagtgtgacaatc
attgtagactgtaaaaagaaggtgaccaagcctctcaaaagaagtgaccaagctgtggtc
aacacagaaggcattactgtctttggcaccagaatcctggacgatgaagtctttgagggt
gacatccagcagctgctgattgtagcagatcccagagcagcctatgactactgtgaactc
tacagccctgactgtgaaacacccagccatcatgacatcccgcaggctcaggaaccagag
gacgtgtacactaattatgagtatggtgacgtctatgattacaaagactacagtgaagga
gaaataacccctcacattccccccactgctccaccaaagaccgagactaatgccggtgat
gactactacaatggagagtatgaatataccaagctggatggaagtcagcctgaaactccc
actgagtctacagcacaaggccagagttatgaaggggaagtagagtacgattacatcact
ggtgtagatgaggtcggtgtggaccccactgttcctgcgaaagctgctgtccctgaggac
accaataagagtgtggatcctacaactgaccagtacgagtttaaggaatacaacgtgaag
gagtatgataccaaggagttcgaaggaaaaacatacgactatggtgaatatgacgaatac
gtccccaccgatgtcaagcctacaactgaaacgtacgaagaaaagttcggccttggagtt
ccagcagagacagacatcagagagagtgctgtaatcgggggtcagagttacttgggtcag
aaaggagagaagggtgaaccagctgtcattgagcctgggatgcttttagaaggaccccaa
ggagtccctggcccagcaggtgttcctggtaccccagggttgcaagggcccccaggtact
ccaggagatcctggtgagaggggtcccccaggtcgtcctggtattcccggttcagacggt
gttcctggacctccaggtaccattctgatgcttccattccgtgccggcggtgaagcacac
aaaggacccgtgatcacagctcaagaagctcaggctcaggccatcctgtctcaggctaga
ctaacaatgagaggtcctccagggcctgcaggcatggcaggaagatccggtctagtggga
ccgcctggcgcacatggactcaaaggtgacagtggtgaaactgggccacagggacccaga
ggtcttcaaggccccacaggtccaccagggaaagcagggaagaggggccggaatggagct
gatggggcacgtggaatgccaggagaggcaggagccaagggtgatcgaggttttgatggg
cttcctggtcttccaggagagaaaggtcataggggagaacacggctccacaggtcctcca
ggtccaccaggagaagatggcccaagaggtgaagacggccaggttgggcagagaggtttg
gcaggagacagtggtcccagaggcttactcggccccagagggtcccccggcccttcagga
cagcctggtctctctggacttgatggacaggccggtcccaaaggaaacatgggtccacaa
ggagagccaggtcctcccgggcagcagggccttcctggtcctcatggtctcattggtcct
caaggtccaatcgggcctcctggtgaaaaaggacctcaagggaagcaaggtctggctgga
cttgctggtgctgatggtcctcctggtcacccgggaaaggagggtcctcctggggagaaa
ggatcagttggttttcctggtccagtgggatccatcggttatcccggtcctcgtggtgtc
aaaggagctgaaggaatccgaggcctcaaaggtgacaaaggagaaaagggagaagatggg
tttcctgggttcaaaggggacatgggaatcaagggggacaagggcgaggttggtgtaaat
ggacccagaggagaggacggtcctgagggtcccaaggggaaatcgggaccaagcggagag
accggtccgttgggtttagctggagagaagggaaagcttggagtgcctggactgcctgga
taccctggaagacaaggccccaagggttccaatggcttcccaggattccctggggcaaat
ggtgaaaaaggagcaaggggaattgctggaaaatccggccccagagggcaacgaggtcca
actggtccccgtggaggacgaggagcaagaggaccgacaggaaaaccaggtgcaaagggc
acctccggcagcgatggacctcctggcccacccggagagcggggaccgcaaggaccacag
ggacctgtcggtttccctggacccaaaggaccaaatggtccagcaggtaaagatgggctg
cccggtcaccctggacagaggggagaaacgggcttccaaggaaaaaatggaccccctgga
cccgtaggagtggttggacctcagggaccgactggagagacaggaccaagtggagagcga
ggacaccctggttcccctggtccacctggagagcaaggtttaccaggagctgcaggaaag
gagggtggaaagggagatccaggtcttcagggtcctggtggcaaggtggggcctcctggc
cttagaggtttccaagggacaagaggtcttccaggagctatgggtccagctggcttaaag
ggaggagaagggcctcagggtccccctggccctgttggttctcctggtgagagaggtccg
gctggtcctggaggtcctattggtcagacaggacggaatggtccacaaggaccacctggt
cctgctggagagaaaggcggtcctggagagaaaggtcccatgggtccagctggtcgtgat
gggattcaaggcccggtaggtcttcctggtccagctggtgctcagggtccccctggagag
gacggtgacaagggagaagttggtggacctggacagaagggcagcaaaggagacaagggt
gaatctggtccaccgggtccaacaggtgtccagggcgtggttggagctcctggtccagct
ggcagcgatggtgaagcagggccaagaggacagcagggcatgttcggtcagaaaggagac
gaaggacccagaggttttccaggactaccaggacccgtcggactgcagggtctgcccggt
cctcccggtgagaagggagaaaacggggacgttggagcgatgggtccaccaggtcctcct
ggtcccagaggtccacagggccccagtggtgctgatggtgcacaagggcctcctggaggt
attggttcaatgggagctgtcggtgagaaaggagaaactggagaggctggtaacccagga
ccacctggagaacctggtattggaggccctcgaggagagactggagagaagggagagact
ggcccccctggagctgctgggcctgcaggcgccagaggaccccctggcgatgatggtcca
aagggtaaccctggtcctgtcggcttcccaggagacccaggcccccctggtgagccaggt
gctgctggtcttgatggtttacctggtgataagggagatgatggagaggcaggacaacca
ggccctccaggtccatctggtgaagccggagtaccagggcctcctggtaaaaggggacct
cttggacaagcaggtcaagagggcaggcaaggagaaaagggatccaagggagaatctgga
gcagaaggacctgttgggaaaactggacctgtgggacctcaggggccacccggaaaggct
ggtgctgaaggtctgcgtggaattcctggccctgttggtgagcaaggacttccaggtgcc
tctggacaagatggtcctcctggacccattggaccccctggacttcccggcatgaaagga
gactctggattcaaaggagagaagggtcatcctggtctcattggtctgattggacctcct
ggtgaacccggagagaagggagacagaggtctgcctggacctcagggttctgcaggtggt
aagggagacgctgggttggggggtgccaatggtcctctcggtcctcctggtcctcctgga
cttcctggtgcacaaggacaaaaagggtctaagggttcagttggttcggctggtcagaag
ggagaccctgggctggttggacaacctggaccacctggtccacctggtgacatcatccag
tcgctgcccattcatcagcctagcaaaaagagcaggcggcaggccgacacgcagggagac
gaggcattggccgactatggcataggtttgggcacagagggaatggaggatgtctttgga
tctctcaacaacctcaaacaagacatcgaacacatgaagttccccatgggcacgcaagac
aaccctgctagaacctgcaacgacctgcacctcagccagcccgacttcccagatggtgaa
tactggatcgatccaaaccagggctgcattggagacgccatcaaagtgttttgtaacttc
acagcaggtggagaaacgtgtatttacccagacaagaagtctacaggagttagaatatct
aactggcccaaggagtctccaggttcttggttcagtgaattcaaacgagggaaaatcttg
aactacgtcgacatggcagagaacaccatcaacatggttcagataaccttcttaaagctg
ctgagctcctcagcccggcagaacttcacctacatttgccatcaatccgtcgcctggtat
gatgccaaagctgacagctacgacaaggcgctgcgcttcctgggctccaacgatgaggaa
atgtcttatgacaataatcctttcatcaagccgctgatggacggctgctcgctaaagcag
ggctattccaggactacgttggagatcaacactccccgcatcgaccagttgcccatcatt
gacgtcatgctgaatgactttgggggcaccaaccagaggtttggctttgaggttggtgcc
gtgtgtttcctcggctag
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