Nothobranchius furzeri (turquoise killifish): 107384004
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Entry
107384004 CDS
T05163
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04510
Focal adhesion
nfu04512
ECM-receptor interaction
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107384004
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107384004
09142 Cell motility
04820 Cytoskeleton in muscle cells
107384004
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nfu04147
]
107384004
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107384004
Exosome [BR:
nfu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107384004
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107384004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107384004
NCBI-ProteinID:
XP_015812469
LinkDB
All DBs
Position
sgr09:38659692..38686703
Genome browser
AA seq
1672 aa
AA seq
DB search
MKDVMSSVTLHPLWWIFFLIISVQLQCISAAEIKDPCKGRDCSQCQCLPAKGAQGLPGRI
GRQGPRGPMGPRGLEGPPGENGRKGSMGSYGPDGPKGDSGETGLPGFMGHDGSPGHPGAG
GEPGLPGVDGCNGTRGKPGIPGFPGLDGLHGPPGLKGRKGDKGEPLYDAPLPGLPGERGI
DGEPGLPGIPGDIGRKGQPGPPGPSGPQGLDGPKGVRGQPGDPGRSLVGDKGDDGEQGPP
GPQGAEEVVEFPPDFLPPKGVKGDKGLPGICGPRGETGVPAKSHGHDIKGEQGILGFPGA
RGFPGQPGREGRTGAGGSPGNIGLPGLNGRKGEKGYPGDQGLPGPLLNHSDSYVRGAKGD
RGYPGAPGIPGDPGHMGRPGPPGSPGLPEGRGLPGPPGPFGEKGNKGEPGSYDENEIGLF
PGLKGAKGLPGAKGFPGLPGPPGCGDYYCEPGSPGQPGDNGSRGPHGNKGLTGIKGCPGE
CECIPGRGTEGPPGPPGYPGLPGLPGAPGPKGDPGLMGNEGSRGPHGDHGTPGSKGRKGQ
KGESVVVGNKGAKGNPGEPGYVGPPGHPGRPGQDGIPGTLGEPGPPGAGYEGLPGPKGYP
GSPGPKGFPGTVGPPGSGFPGSAGLRGTPGNQGFPGVPGIPGKPGPPGDPCCHKDQVGPP
GPKGEPGESGILGQPGRDGFPGTPGPPGHKGMKGEDGGTGGTGPPGPPGVDGEPGEPGPR
GIGLDGPQGLPGLPGPSGRKGAPGDVLSAWPGPTGAPGPRGTLGVMGVPGTPGSPGSPGT
QGQPGPQGRKGEPGDNGDHGATGPPGPPCTECDVTSPPGPPGPPGRPGTRGISGYPGQKG
GRGETGPPGRGQKGSKGLPGPSGGPGLAGQRGPAGPPGEPGNDGFPGQKGEKGYPGRAGP
NGVPGSPGRQGLRGQKGERGFPGHAGESGFQGLPGRKGVPGPRGPSGPSLTVNVTKGHPG
FPGRRGTLGQPGLPGSNGQKGMKGDSGPDGWLGPPGLSGLAGAPGRPGVPGPPGFPGIKG
FPGPRGYPGNDGETGDPGLPGEVGIPGPQGYPGVKGDPGEFYGEPGPQGPKGSPGEDGPF
APNGHPGDPGNPGPRGRPGQPGVPGIPGESGRPGGPGFPGPRGPSGRLGFPGPPGDQGGV
GLPGPPGLYGPPGPTGPPGLDGLDGLRGPKGMKGSSGTDIPGPPGPNGPPGEKGVRGFPG
PPGATYTGPKGERGPPGNSGLPGLPGEPGYPGTSCQTPLHGSPGDRGYEGPPGPPGPPGA
PGVPGTNYFSKGDPGPVGPPGLPGCKGDKGLPGPPGPPNHYGRLGPKGEQGPPGPRGPSG
HKGQRGVPGPPGHKGDRGPTGETGVKGKPGDLIDDKTEKAPQGLPGPQGALGPAGVAGEV
GPPGPPGWKGGKGPKGFMGLPGQPGPPGLNGLVGDPGNIGVPGFTGPQGTPGPPGDQGEP
GYRRSRRSTFLLVIHSQSVQTPECPAGSTRLWVGYSLLYLEGQEKAHTQDLGQPGSCLSV
FSTMPFSYCDKAACYYSSRNDKSYWLSTTAPIPMMPLFGAEISFHISRCAVCEMVFPAVA
FHSQAQVVPSCPPGWRSLWTGYSFLLHTGAGDEGGGQSLTSSGSCLKDFRTHPFIECQGA
RGSCHYFANLYSFWLTTVSEMGDFIHAKPGIIKAADEQRRKASRCNVCLREQ
NT seq
5019 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatgttatgtcttctgtgaccttgcatccactctggtggatcttttttctgatt
atcagtgtgcagctacagtgcatcagtgcggctgaaatcaaggatccatgtaaaggcagg
gactgctcacaatgtcagtgccttcctgccaaaggtgcacaggggcttccaggtaggatt
ggtcggcaaggtcctcgtggaccaatgggaccaagggggcttgaagggccacctggagaa
aatggaaggaaaggatcaatgggatcatatggcccagatgggccaaaaggtgacagtggt
gagacagggcttcctgggttcatgggtcatgatgggtcacctggtcaccctggtgctggt
ggtgagcctggtctgcctggtgtagatggctgtaatggcacaaggggtaaaccaggaata
cctggttttccaggtttggatggacttcacggtccaccgggattaaaaggccgtaaaggt
gataaaggagaacctttgtacgatgctccacttccaggtctacctggggaacgtgggata
gatggagaacctggtttgcctggaatacctggagacattggacgtaaaggccagcctggt
ccccctggcccttctgggcctcagggtttggacggacctaaaggtgtgagaggacagcca
ggcgacccaggaagatcactcgtcggtgataaaggtgacgatggtgagcaaggtcctcct
ggcccacaaggagctgaagaagttgtagaatttcctccagatttccttccccctaaaggt
gtcaagggagataaaggccttcctggaatatgtggtccaagaggagaaacgggtgttcca
gcaaaatcgcacggtcacgatattaaaggcgaacaaggaatcctcggatttcccggtgct
aggggttttcccggacagcctggtagagaaggacggacaggagctgggggttctcctgga
aacataggacttccgggccttaacggtagaaaaggagaaaagggatatccaggagatcaa
ggtctacctggtcctttgctgaatcacagtgatagttatgtgagaggtgctaaaggagac
cgtggatatccaggtgctccaggaatccctggggacccagggcacatgggcaggcctggg
cctccgggttcaccagggttaccagaaggacgcggattgcccggtccgccaggtcccttt
ggagaaaagggcaacaagggagaaccaggaagctacgatgagaatgaaattggcctcttt
ccaggacttaagggagcaaaaggacttccaggggctaaagggttcccaggtctcccaggt
cctccaggatgtggagattattactgtgagcctggttctcctgggcagcctggtgacaat
ggatccagaggaccacacggaaacaaagggctgacaggaattaaaggttgtccaggagaa
tgtgaatgcattcctggtaggggtactgaaggccctcctggtcctcctggttatccaggc
ctcccagggttaccgggagctccgggacccaaaggagatccaggactgatgggcaatgaa
ggctcaagaggcccacatggtgatcatggaactccaggttcaaaaggaagaaaaggtcag
aaaggagaatctgttgtggtgggaaataaaggtgcaaaaggtaatccaggagaacctgga
tatgttggtcctcctgggcatccaggtagacctggacaggatggcatacctggtaccttg
ggagaacctggaccaccgggtgcagggtatgaaggattgcctggtcccaaaggctaccct
ggttctccgggaccaaagggatttccaggaactgtgggccctcctggctctggttttcca
ggctcagccgggctacgtggaactccgggaaatcagggttttccgggagtaccaggaatc
cctggcaaaccagggcctccaggtgacccgtgctgccataaagaccaggttggcccacca
ggtcctaagggagagccaggtgaatcagggattctgggtcagccaggaagagacggtttt
ccaggaactccaggaccccctggccacaaaggcatgaagggagaagatggtggaactgga
gggactggaccaccagggccgccaggtgtagatggagagccaggagaacctggtcccagg
ggaattggtctagatggccctcaaggccttcctgggttacctggaccatcaggcagaaag
ggtgcccctggagatgtcctctctgcttggccaggtcctactggagcaccaggacctcgt
ggaactttgggggttatgggggttcctggaactcctggaagtccaggatcaccaggcaca
caaggccaaccagggcctcaaggacgtaaaggagagcctggggacaatggtgaccatgga
gcgactggtccaccaggcccaccctgcactgaatgtgatgtgacaagtccaccaggccct
ccaggtcctcctggtcgcccaggaacaagaggaatatcaggttatcctggtcagaaaggg
gggagaggagaaacaggtcctcctgggcgtggacaaaaaggttcaaaaggtttacccggt
ccttctggtggtccaggcctagcaggacaacgaggccccgctggaccccctggggaacct
ggtaatgatggttttccaggacagaaaggagagaagggttaccctggcagggctggacct
aatggagtaccaggatctcctggacgtcaggggttaagaggtcaaaagggagaaagagga
tttccaggtcatgctggtgaatcgggatttcaaggcctgcctggcagaaaaggtgttcca
ggacccagaggaccatcagggccctcactgactgtaaatgtaacaaaaggccatccagga
tttcctggaaggagagggacactaggacagccaggacttccaggctcaaatggtcaaaag
ggcatgaaaggcgattcggggcctgatgggtggcttggtccaccaggattatcgggactt
gctggtgctccaggcaggccaggagtgccaggaccccctggatttccgggaattaaaggt
ttcccaggccctaggggatatcctggaaatgatggagaaacgggagatccaggtcttccg
ggagaagtaggtatccccgggcctcagggataccctggtgtcaagggtgatccaggagag
ttttatggggaacctggtcctcaagggcccaaaggatcaccaggtgaagatggacccttt
gcacctaatggtcatccaggagatccaggtaacccaggacccagaggaagacctgggcaa
cctggtgttcctgggatcccgggagaatcaggacgaccaggagggccaggttttcctgga
cctcgtggtccatcaggtcgtctgggttttccaggtcctccaggtgatcaaggaggtgtg
ggactgccaggcccacctggcctatatgggcctccagggccaactggaccaccaggtctg
gatggactagatgggctgaggggtccaaaagggatgaagggatcaagtggaactgatatt
cctggtccacctgggccaaatggtcctcctggagaaaaaggtgtcaggggcttcccaggg
cctccaggagccacatatactgggcctaagggtgaaagggggccaccaggaaactcaggt
cttccaggcctgccaggtgaacctggttatcctggaacatcatgccaaacacctttgcat
ggatccccgggagacaggggctatgaaggacctccgggaccccctggtcctccaggagct
cctggggtcccaggtaccaattatttttctaaaggtgacccaggaccagttggtcctcct
ggattaccaggatgtaagggagataaaggccttccaggacctcctggacctcctaaccat
tatggccgcctaggaccaaagggggaacaaggacctcctggtccaaggggcccctcaggt
cacaaaggtcaacgtggtgtacctgggcccccaggtcataagggagatagagggcctact
ggagaaacaggtgttaaaggaaaacctggggacttaatagatgacaaaacagaaaaggca
ccacaaggactcccaggaccacaaggagccctgggacctgcaggggttgctggtgaagtg
ggcccacctgggcccccaggatggaagggaggcaaaggtcctaaaggattcatgggcctt
ccaggccaaccaggtcctcctggtttaaatggtctggttggagacccaggaaacattggg
gtgccaggattcactgggcctcaaggtacccctggacctcctggtgatcaaggtgagcca
ggctacagaaggtcacgaaggtcgacttttcttttggttatccacagccagtcagtccag
actcccgagtgccctgctggcagcacccgcctttgggtgggatacagtcttctttaccta
gaaggccaggaaaaggctcacacacaagatctgggtcagcctggctcttgcctttcggtt
ttctccaccatgccattctcctattgtgacaaagctgcctgctactactctagtcgcaat
gacaaatcctactggctctccaccacggctcccatacccatgatgccactctttggcgca
gaaataagcttccatataagccggtgtgcagtgtgtgagatggtttttccagcagtggcg
tttcacagtcaggctcaagtggttccttcatgcccacccggctggaggagtttgtggaca
ggttactcttttctcttgcacacaggggcaggcgacgagggtggtggacagtcattgact
tcttcgggaagctgccttaaggattttagaactcacccatttattgagtgtcaaggcgca
agaggctcctgccactactttgcaaacctgtacagtttctggctgaccaccgtgagtgag
atgggagactttattcatgcaaagcctggcataatcaaagcagctgatgagcagcgacgc
aaggccagccgctgtaacgtctgcctcagagaacaataa
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integrated database retrieval system
