KEGG   Nothobranchius furzeri (turquoise killifish): 107384004
Entry
107384004         CDS       T05163                                 
Name
(RefSeq) collagen alpha-4(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
nfu  Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04382  Cornified envelope formation
nfu04510  Focal adhesion
nfu04512  ECM-receptor interaction
nfu04518  Integrin signaling
nfu04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:nfu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    107384004
   04518 Integrin signaling
    107384004
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    107384004
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    107384004
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    107384004
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:nfu04147]
    107384004
   00536 Glycosaminoglycan binding proteins [BR:nfu00536]
    107384004
Exosome [BR:nfu04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   107384004
Glycosaminoglycan binding proteins [BR:nfu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   107384004
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 107384004
NCBI-ProteinID: XP_015812469
LinkDB
Position
sgr09:38659692..38686703
AA seq 1672 aa
MKDVMSSVTLHPLWWIFFLIISVQLQCISAAEIKDPCKGRDCSQCQCLPAKGAQGLPGRI
GRQGPRGPMGPRGLEGPPGENGRKGSMGSYGPDGPKGDSGETGLPGFMGHDGSPGHPGAG
GEPGLPGVDGCNGTRGKPGIPGFPGLDGLHGPPGLKGRKGDKGEPLYDAPLPGLPGERGI
DGEPGLPGIPGDIGRKGQPGPPGPSGPQGLDGPKGVRGQPGDPGRSLVGDKGDDGEQGPP
GPQGAEEVVEFPPDFLPPKGVKGDKGLPGICGPRGETGVPAKSHGHDIKGEQGILGFPGA
RGFPGQPGREGRTGAGGSPGNIGLPGLNGRKGEKGYPGDQGLPGPLLNHSDSYVRGAKGD
RGYPGAPGIPGDPGHMGRPGPPGSPGLPEGRGLPGPPGPFGEKGNKGEPGSYDENEIGLF
PGLKGAKGLPGAKGFPGLPGPPGCGDYYCEPGSPGQPGDNGSRGPHGNKGLTGIKGCPGE
CECIPGRGTEGPPGPPGYPGLPGLPGAPGPKGDPGLMGNEGSRGPHGDHGTPGSKGRKGQ
KGESVVVGNKGAKGNPGEPGYVGPPGHPGRPGQDGIPGTLGEPGPPGAGYEGLPGPKGYP
GSPGPKGFPGTVGPPGSGFPGSAGLRGTPGNQGFPGVPGIPGKPGPPGDPCCHKDQVGPP
GPKGEPGESGILGQPGRDGFPGTPGPPGHKGMKGEDGGTGGTGPPGPPGVDGEPGEPGPR
GIGLDGPQGLPGLPGPSGRKGAPGDVLSAWPGPTGAPGPRGTLGVMGVPGTPGSPGSPGT
QGQPGPQGRKGEPGDNGDHGATGPPGPPCTECDVTSPPGPPGPPGRPGTRGISGYPGQKG
GRGETGPPGRGQKGSKGLPGPSGGPGLAGQRGPAGPPGEPGNDGFPGQKGEKGYPGRAGP
NGVPGSPGRQGLRGQKGERGFPGHAGESGFQGLPGRKGVPGPRGPSGPSLTVNVTKGHPG
FPGRRGTLGQPGLPGSNGQKGMKGDSGPDGWLGPPGLSGLAGAPGRPGVPGPPGFPGIKG
FPGPRGYPGNDGETGDPGLPGEVGIPGPQGYPGVKGDPGEFYGEPGPQGPKGSPGEDGPF
APNGHPGDPGNPGPRGRPGQPGVPGIPGESGRPGGPGFPGPRGPSGRLGFPGPPGDQGGV
GLPGPPGLYGPPGPTGPPGLDGLDGLRGPKGMKGSSGTDIPGPPGPNGPPGEKGVRGFPG
PPGATYTGPKGERGPPGNSGLPGLPGEPGYPGTSCQTPLHGSPGDRGYEGPPGPPGPPGA
PGVPGTNYFSKGDPGPVGPPGLPGCKGDKGLPGPPGPPNHYGRLGPKGEQGPPGPRGPSG
HKGQRGVPGPPGHKGDRGPTGETGVKGKPGDLIDDKTEKAPQGLPGPQGALGPAGVAGEV
GPPGPPGWKGGKGPKGFMGLPGQPGPPGLNGLVGDPGNIGVPGFTGPQGTPGPPGDQGEP
GYRRSRRSTFLLVIHSQSVQTPECPAGSTRLWVGYSLLYLEGQEKAHTQDLGQPGSCLSV
FSTMPFSYCDKAACYYSSRNDKSYWLSTTAPIPMMPLFGAEISFHISRCAVCEMVFPAVA
FHSQAQVVPSCPPGWRSLWTGYSFLLHTGAGDEGGGQSLTSSGSCLKDFRTHPFIECQGA
RGSCHYFANLYSFWLTTVSEMGDFIHAKPGIIKAADEQRRKASRCNVCLREQ
NT seq 5019 nt   +upstreamnt  +downstreamnt
atgaaggatgttatgtcttctgtgaccttgcatccactctggtggatcttttttctgatt
atcagtgtgcagctacagtgcatcagtgcggctgaaatcaaggatccatgtaaaggcagg
gactgctcacaatgtcagtgccttcctgccaaaggtgcacaggggcttccaggtaggatt
ggtcggcaaggtcctcgtggaccaatgggaccaagggggcttgaagggccacctggagaa
aatggaaggaaaggatcaatgggatcatatggcccagatgggccaaaaggtgacagtggt
gagacagggcttcctgggttcatgggtcatgatgggtcacctggtcaccctggtgctggt
ggtgagcctggtctgcctggtgtagatggctgtaatggcacaaggggtaaaccaggaata
cctggttttccaggtttggatggacttcacggtccaccgggattaaaaggccgtaaaggt
gataaaggagaacctttgtacgatgctccacttccaggtctacctggggaacgtgggata
gatggagaacctggtttgcctggaatacctggagacattggacgtaaaggccagcctggt
ccccctggcccttctgggcctcagggtttggacggacctaaaggtgtgagaggacagcca
ggcgacccaggaagatcactcgtcggtgataaaggtgacgatggtgagcaaggtcctcct
ggcccacaaggagctgaagaagttgtagaatttcctccagatttccttccccctaaaggt
gtcaagggagataaaggccttcctggaatatgtggtccaagaggagaaacgggtgttcca
gcaaaatcgcacggtcacgatattaaaggcgaacaaggaatcctcggatttcccggtgct
aggggttttcccggacagcctggtagagaaggacggacaggagctgggggttctcctgga
aacataggacttccgggccttaacggtagaaaaggagaaaagggatatccaggagatcaa
ggtctacctggtcctttgctgaatcacagtgatagttatgtgagaggtgctaaaggagac
cgtggatatccaggtgctccaggaatccctggggacccagggcacatgggcaggcctggg
cctccgggttcaccagggttaccagaaggacgcggattgcccggtccgccaggtcccttt
ggagaaaagggcaacaagggagaaccaggaagctacgatgagaatgaaattggcctcttt
ccaggacttaagggagcaaaaggacttccaggggctaaagggttcccaggtctcccaggt
cctccaggatgtggagattattactgtgagcctggttctcctgggcagcctggtgacaat
ggatccagaggaccacacggaaacaaagggctgacaggaattaaaggttgtccaggagaa
tgtgaatgcattcctggtaggggtactgaaggccctcctggtcctcctggttatccaggc
ctcccagggttaccgggagctccgggacccaaaggagatccaggactgatgggcaatgaa
ggctcaagaggcccacatggtgatcatggaactccaggttcaaaaggaagaaaaggtcag
aaaggagaatctgttgtggtgggaaataaaggtgcaaaaggtaatccaggagaacctgga
tatgttggtcctcctgggcatccaggtagacctggacaggatggcatacctggtaccttg
ggagaacctggaccaccgggtgcagggtatgaaggattgcctggtcccaaaggctaccct
ggttctccgggaccaaagggatttccaggaactgtgggccctcctggctctggttttcca
ggctcagccgggctacgtggaactccgggaaatcagggttttccgggagtaccaggaatc
cctggcaaaccagggcctccaggtgacccgtgctgccataaagaccaggttggcccacca
ggtcctaagggagagccaggtgaatcagggattctgggtcagccaggaagagacggtttt
ccaggaactccaggaccccctggccacaaaggcatgaagggagaagatggtggaactgga
gggactggaccaccagggccgccaggtgtagatggagagccaggagaacctggtcccagg
ggaattggtctagatggccctcaaggccttcctgggttacctggaccatcaggcagaaag
ggtgcccctggagatgtcctctctgcttggccaggtcctactggagcaccaggacctcgt
ggaactttgggggttatgggggttcctggaactcctggaagtccaggatcaccaggcaca
caaggccaaccagggcctcaaggacgtaaaggagagcctggggacaatggtgaccatgga
gcgactggtccaccaggcccaccctgcactgaatgtgatgtgacaagtccaccaggccct
ccaggtcctcctggtcgcccaggaacaagaggaatatcaggttatcctggtcagaaaggg
gggagaggagaaacaggtcctcctgggcgtggacaaaaaggttcaaaaggtttacccggt
ccttctggtggtccaggcctagcaggacaacgaggccccgctggaccccctggggaacct
ggtaatgatggttttccaggacagaaaggagagaagggttaccctggcagggctggacct
aatggagtaccaggatctcctggacgtcaggggttaagaggtcaaaagggagaaagagga
tttccaggtcatgctggtgaatcgggatttcaaggcctgcctggcagaaaaggtgttcca
ggacccagaggaccatcagggccctcactgactgtaaatgtaacaaaaggccatccagga
tttcctggaaggagagggacactaggacagccaggacttccaggctcaaatggtcaaaag
ggcatgaaaggcgattcggggcctgatgggtggcttggtccaccaggattatcgggactt
gctggtgctccaggcaggccaggagtgccaggaccccctggatttccgggaattaaaggt
ttcccaggccctaggggatatcctggaaatgatggagaaacgggagatccaggtcttccg
ggagaagtaggtatccccgggcctcagggataccctggtgtcaagggtgatccaggagag
ttttatggggaacctggtcctcaagggcccaaaggatcaccaggtgaagatggacccttt
gcacctaatggtcatccaggagatccaggtaacccaggacccagaggaagacctgggcaa
cctggtgttcctgggatcccgggagaatcaggacgaccaggagggccaggttttcctgga
cctcgtggtccatcaggtcgtctgggttttccaggtcctccaggtgatcaaggaggtgtg
ggactgccaggcccacctggcctatatgggcctccagggccaactggaccaccaggtctg
gatggactagatgggctgaggggtccaaaagggatgaagggatcaagtggaactgatatt
cctggtccacctgggccaaatggtcctcctggagaaaaaggtgtcaggggcttcccaggg
cctccaggagccacatatactgggcctaagggtgaaagggggccaccaggaaactcaggt
cttccaggcctgccaggtgaacctggttatcctggaacatcatgccaaacacctttgcat
ggatccccgggagacaggggctatgaaggacctccgggaccccctggtcctccaggagct
cctggggtcccaggtaccaattatttttctaaaggtgacccaggaccagttggtcctcct
ggattaccaggatgtaagggagataaaggccttccaggacctcctggacctcctaaccat
tatggccgcctaggaccaaagggggaacaaggacctcctggtccaaggggcccctcaggt
cacaaaggtcaacgtggtgtacctgggcccccaggtcataagggagatagagggcctact
ggagaaacaggtgttaaaggaaaacctggggacttaatagatgacaaaacagaaaaggca
ccacaaggactcccaggaccacaaggagccctgggacctgcaggggttgctggtgaagtg
ggcccacctgggcccccaggatggaagggaggcaaaggtcctaaaggattcatgggcctt
ccaggccaaccaggtcctcctggtttaaatggtctggttggagacccaggaaacattggg
gtgccaggattcactgggcctcaaggtacccctggacctcctggtgatcaaggtgagcca
ggctacagaaggtcacgaaggtcgacttttcttttggttatccacagccagtcagtccag
actcccgagtgccctgctggcagcacccgcctttgggtgggatacagtcttctttaccta
gaaggccaggaaaaggctcacacacaagatctgggtcagcctggctcttgcctttcggtt
ttctccaccatgccattctcctattgtgacaaagctgcctgctactactctagtcgcaat
gacaaatcctactggctctccaccacggctcccatacccatgatgccactctttggcgca
gaaataagcttccatataagccggtgtgcagtgtgtgagatggtttttccagcagtggcg
tttcacagtcaggctcaagtggttccttcatgcccacccggctggaggagtttgtggaca
ggttactcttttctcttgcacacaggggcaggcgacgagggtggtggacagtcattgact
tcttcgggaagctgccttaaggattttagaactcacccatttattgagtgtcaaggcgca
agaggctcctgccactactttgcaaacctgtacagtttctggctgaccaccgtgagtgag
atgggagactttattcatgcaaagcctggcataatcaaagcagctgatgagcagcgacgc
aaggccagccgctgtaacgtctgcctcagagaacaataa

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