KEGG   Nothobranchius furzeri (turquoise killifish): 107384006
Entry
107384006         CDS       T05163                                 
Name
(RefSeq) roquin-1-like isoform X1
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
nfu  Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:nfu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:nfu03000]
    107384006
   04121 Ubiquitin system [BR:nfu04121]
    107384006
Transcription factors [BR:nfu03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    107384006
Ubiquitin system [BR:nfu04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    107384006
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-RING_UBOX zf-RING_2 zf-C3HC4_4 zf-C3HC4_3 zf-C3HC4 zf-CCCH zf-C3HC4_2 zf-CCCH_4 Prok-RING_4 FYVE zf_CCCH_4 NS3_helicase_C Baculo_IE-1 zf-RING_6 RING_XB3-XBAT31 NYN_YacP
Other DBs
NCBI-GeneID: 107384006
NCBI-ProteinID: XP_015812471
UniProt: A0A9D2YNG6
LinkDB
Position
sgr09:38508056..38521368
AA seq 1141 aa
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDSQNYEMARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWDQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARSGGLLPDDGLPPDVAVTRKISPII
NGGGTPNLPQLVARGTETVSYEIMRKPVKLDGGSPSIPGSPPDVLDPMPKSGMSLTPHAM
SARMPADHLQGIKHVSMVARGSPVYPPSQPSDMCYDPRPPPASQYEPPQYAPGYPYQQQY
VRDPYMRNPPPPSDSGPPYHDPYTGYGPPERPYPAHHGPPFSYAHPPHYDRGRPGTYSNP
PPQPYPPQSNSLVKMSQAPVDVPPSSTGPANPLYHQEPSPRDRYPTDGYYPPGNQSPHMR
TYVRGPSYCSPQPSLDYLHRRRQELISQLEERKVISPPPFAASPTLPHPFPSDYPTEYGD
ESSKAVLKCREPDYAGQYSPWSCETIGSYIGTKDPKPKDVMVPGTMEMMNVEAKGLREPS
LEAPRRSAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQNTGPVQAIASTPQNPNSKHM
VMPAEYSYGSHGGWSGAPYPSHPNASSSQGHFERLTAASDREQLKIELQQVNQQINQQTQ
MHNMENFQPAHFHSSLPVSKLQTASNSLLLQRDVGALAGQPLQASQGQTAVASQQQQPKW
PAGGASASAVSSEQLSLELHQVEREIGKRTREMAMENQVAHDVQPYKMMPAENGQPEHQT
QLEEMSLALGDVSNGSSSLQESAVGGSMLSLTNKTSALSLCSDSGASGSEMQKNGVVHSC
S
NT seq 3426 nt   +upstreamnt  +downstreamnt
atgccagtgcaagcgccacaatggacagagtttctgctgtgcccaatctgcacgcagacg
tttgaggagactgttcgccggcccatcagtttgggctgtggacatactgtctgcaagatg
tgcctgaacaagttgcaccgtaaggcctgtccttttgaccagacggccatcagcactgac
attgagcagttacctgtcaacacagccctgttgcagctggtgggaggccaggttcctaag
gctcagcctgttgccttgattaccagtccagaggactcacagaattatgagatggctagg
cagtgtgtggaggaactggccctctacctcaaacctctcagcaacactcgaggtgtaggt
ctgagcagcacggcccagagcatgctgagtcgacccatgcagaggaagttggtaactctc
gtccactgccagctggttgaggaagaaggtcgtattagagccatgagggcagcccgctct
cttggtgagcgaacagttactgagctcatcttgcagcaccagaatcctcagcagctctcc
tccaatctctgggctgctgtccgtgcaagaggttgtcagtttcttggccctgcaatgcaa
gaggaagcgctaaagctggttcttcttgctttagaagatggttctgcattgtccaggaag
gtcttagttctctttgtagtccagagacttgagccacgcttcccacaggcctctaaaaca
agcataggccacgtggtacagctcctttacagagcttcctgctttaaggtcaccaaacgt
gatgaggattcatccttgatgcaactgaaagaagagtttcgtacttatgaggctctacgg
cgtgagcatgactctcagattgttcagatagccatggagggtggattgcgcattgcaccc
gaccagtggtcctctctgttgtacggagatcagtctcacaagtctcacatgcagtcaatc
atcgataagctgcagaccccagcatcttttgctcaaagcgtccaggaactgacgatcgca
ctgcaaaggactggagatccagccaaccttaacaggctgcggccccacttagaactactg
gcaaacatcgatcccagtcctgatgctcctcctcctacctgggatcagctggagaagggg
ttggtagcggtgaaaaccgtagtacacggcctggtggatttcatccagaaccatagcaag
aaaggagctgaccctcaacagccacctcagcacagcaaatacaagacgtacatgtgtcgt
gacatgaagcagaagggaggctgtcctcgtggagccagctgcacctttgcccactctcag
gaagaactggaaaagtaccgtaagatgaataagcgcctggctgctcgctctggggggctt
ttaccagatgacggccttcctcctgatgtagcagtaacccggaagatctcaccgatcatc
aatggcggtggaacaccaaatctgccacagttagttgctcgaggcactgaaacagtctct
tatgagatcatgcgtaagccagttaagctggatggaggaagtccaagtatcccagggtca
ccgcctgatgtactggaccctatgcccaaatctggaatgtctttgacgcctcatgcaatg
tctgccaggatgcccgcagaccacctccaaggaattaagcatgtgtcaatggtagcgagg
ggatcacctgtttatcccccatcgcagccgtctgatatgtgctatgacccacgtccccca
cctgcctctcagtatgagcctccacagtatgcaccaggctacccctaccagcaacagtat
gttcgagatccatacatgcgtaaccctcctcccccaagtgattcaggacccccttaccat
gacccttacactggttatggtcctccagagcgcccgtacccagcacaccacggcccacct
ttctcctatgctcatcctcctcattatgacagaggtcgccccggcacctacagcaacccg
ccacctcagccctacccacctcagagtaacagccttgtaaaaatgagtcaagcacccgtg
gatgttcccccatcatcaacggggccggccaacccgctgtaccaccaggagcctagtcct
cgggatagatatccaacagatggctactatccaccgggcaaccagtctccacatatgagg
acttatgtcaggggaccatcatactgtagtccacagcctagtttggactacctgcaccga
cgacgacaggagctgatatcccaactggaagaaaggaaagtgatctctcctccgccgttc
gctgcctcccctacacttccacatcccttccccagtgactaccccactgagtatggggat
gagagctccaaagcagttttgaagtgcagggagcctgactacgcggggcagtactccccc
tggtcctgtgaaactattggttcatatattggcacaaaagaccccaaacccaaagatgtc
atggttcctggaactatggagatgatgaatgtggaggccaaaggtctgagagaaccgtca
ctggaggctcctcgaaggagtgcagaagtaaaggatgatgacccgattataccgtttggt
ccccagcccacagtatcacgctttggtgccatttctcgcacttcaaagacgggctaccag
aacactggtccggtgcaagctatagcctccaccccccagaaccccaactctaaacatatg
gtcatgccggcagaatattcatatggaagtcatggtggttggagtggagctccatatccc
tcccacccaaatgcttcttcctctcagggacactttgagcgcctcacggcagcctcagac
agagagcagttaaagattgagctgcagcaggtcaaccagcagatcaaccagcagactcag
atgcacaacatggagaatttccagcctgcacacttccactcctcacttcctgtttcaaaa
ttgcagactgccagtaactctttgctcctgcagagggatgttggtgcattggcaggtcag
cctctgcaggccagccagggccagacagctgtagcatcccaacagcaacagcccaagtgg
ccagcagggggtgcaagtgcatcagctgtatcaagcgaacagcttagcttggagctccat
caggtggagagagaaattggcaaaaggactcgtgaaatggctatggaaaaccaagtagcc
catgatgttcagccatacaagatgatgcctgcagaaaatggacaaccagagcaccagact
cagctggaggaaatgtctctggctcttggtgacgtgtccaacggctccagcagtttgcaa
gaaagtgcagtgggcgggtccatgctgtcactgacaaacaagacatctgcactgagcctg
tgttctgattcaggtgcctctgggtcagagatgcagaagaatggtgttgtccattcctgc
tcttag

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