Nothobranchius furzeri (turquoise killifish): 107384251
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Entry
107384251 CDS
T05163
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
107384251 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nfu03036
]
107384251 (chd8)
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
107384251 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
HDA2-3
HTH_Hrp3
MUN
Motif
Other DBs
NCBI-GeneID:
107384251
NCBI-ProteinID:
XP_015812879
UniProt:
A0A8C6LG13
LinkDB
All DBs
Position
sgr09:49686446..49708270
Genome browser
AA seq
2591 aa
AA seq
DB search
MADPIMDLFEDTPLFNLDALPDDSFSHGSSDPVEEALKLALGQVVPTEPEPTPDLSVNTS
LDVPVAAPSIPDPAPVQIPIQQPMPVMTVQSVSLAAAPTVTPASVDTVPQIQTTVPIASN
TSGVSSSAVLLSSPLTVSSSPATTTQQLTQITHQLTPQQLAAITQQAGGKIVILKGPQGQ
AQVLQTISGTTGQTTGKVIRVLSGTPLKPGVSILQGGAVLNQASPGQAQVKVGGAGVQRL
LQSPNGPVKQVLLTSMPQQVQQTQTQPVQVKIPAQAQIAQGQTTVQVHPQAQTAQIQVQP
QAHAAQSQVQMQSQVQLQPAMQAQTQGGEAKRITLVLQQPSQPGSATTTGQAVAAPQQVA
QVQQVQTAQGGQQQQTPAPARLVLGQLPSGKLVLQGSQLAALTQARTAGQAGGQPKVLTI
QLQVQQQPNQQGGVKYQLVSGAGNAGSPQMLQISQSQGGQRVAVPIKMLLQPQTTSASPS
GGAVSVVKVINSSAAGPSATTTTSPSQAIRISKAPGEPASVRRVEILCKQEKANRIVAEA
IARAKARGEKNLPRVLNQDELPATHTLSEIGGTVTVVSAAKKKSSSGGSKKKSPLSGGAV
HKTMVGANNKGKVKIQGGTMTVAGGTILPAAGNKNKNKTKANTITLVGAKKRKRNPSSDH
SDGELSPPSPVALEDDMIMKRRSNRVVKRKKYTEDLDIKITDDEDEQEDVDVTTTAAAVA
SISGVAAVQLKQEVELDGDGLPSMQFFVENPSEEDAAIVDKVLSMRITKKEVAPGQYVNA
EEFFVKYKNYSYLHCEWATLNQLEKDKRIHQKIKRFKTKHAQMRHLFQEDEEPFNPDYME
VDRILDVSHSVDKDNGEPVIYYLVKWCSLPYEDATWELKEDVDETKVEEFRKIQNRQPRL
KRTARPPAGSWKKLEETREYKNGNILREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQ
SITLLSEVYAAGVQGPFLVIAPLSTITNWEREFSTWTDMNAIVYHGSLASRQMIQQYEMY
CKDDKGHLIPGAYKFDALITTFEMVLSDCPELREISWRCVIIDEAHRLKNRNCKLLDSLK
MLDLEHKVLLTGTPLQNTVEELFSLLHFLEPAQFPSEIEFLRDFGDLKTEEQVQKLQAIL
KPMMLRRLKEDVEKNLAPKQETIIEVELTDIQKKYYRAILERNFSFLSLGANSNSNVPNL
LNTMMELRKCCNHPYLINGAEEKIVAELRQVYDPLAPDFHLQALIRSAGKLVLLDKLLPR
LKAGGHKVLIFSQMVRCLDILEDYLINKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFV
FLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYE
REMLDKASLKLGLDRAVLQSMSGNKDSSVNGLQQFSKKEIEDLLRKGAYAAIMDENDEGS
RFCEEDIDQILQRRATTITIESEGKGSTFSKASFVASENRNDIALDDPEFWEKWAKKADI
DMDSINQKNTLVIDTPRIRKQTRQFSTLRGEGGDLSDLESDDEYPPANSRHSRASRRSDR
HSGGGYGRTDCFRVEKHLLVYGWGRWRDILSHARCKRRLSERDVETICRVILVFCLLHYR
GDENIKSFIWELITPPENGREPQTLLNHSGLSIPVPRGRKGKRVKAQSTFDVQKVEWIRK
YNPDTLLLDDSYRKHLKHQCNKVLLRVRMLYYLKQEVIGEHADAVLKGAEIRDVDIWMPE
MEQQEVPAVWWDADADRSLLAGVFKHGYEMYTTMRADPCLCFIERVGRPDDKAIDAEQQT
GDAELGDEAEYDKYSEDPEFKPASRHAKDPFEEPDSMNVEDEVSVEDKVEAIVTENVISQ
SGVCDWPSSSSLTARLRRLITAYQRSYRQEQLKIEAEAKGDRRRRRCEQASKLKEIARQE
RQQRWTRREECDFYRVVSTFGVEKIKKDPGYQEAAEPEFDWTRFRTFARLDKKTDESLSR
YFRSFVAMCRRVCHLRPGRIEDVSEIPQTVAPITEERASRTLYRISLLRRLRERVLPHPA
LEERLLLAPRTSELPTWWRIPEHDHHLMLGASLHGVSRTELSIYPDTQFTFSSAREEFIQ
NQQSLPPPPPPPPPIMSLSQPKTEVDSPGVKEEGSDLGVQLFGDEIGAELQSTPLSHHAG
KGHSQGWNFKRSRERGEKTGGGRKGEGGSDSDSDSDSGSSSSGRSGSSDDSGDSDEDVGG
GMKVGDVDEDNSLLSMTPSQDSISPPDPLRVDWPKDRVLINRLDSLCTLVLTGQWPSGRR
YVSEAQLHPGSELGGEEMAYSRVIRKPSSVPSVLGTDGEDGEFTVKLLKEEGLKLTFSKQ
ALMPNGSGGESSRKKRKDQELTDLDGLRDALERTPRRRDPPIWLKENPEYEVEGDMLELL
VNRSKRKRRRRADKALTGTEKVKLINMRTGKKVGAAFCPMLQELREYLEENPDIAVAPEW
SDTVRNSGLLPESFFHRLLTESSEIPKKSRRRHHHHHHHHHHHYHTPEPTPEDPNLDAVE
EETLVSDGAYMMDEEDLETSHHFLTSPDYDVKMEGGDSLSQGDYDSSDQEALLEDVIVAQ
KDSDSSSSSED
NT seq
7776 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcccattatggacctctttgaggacacacctctgtttaacctggacgccctt
ccagatgactccttctctcatggttcttcggaccctgtggaggaagctttgaagttggct
ttgggccaggtggttccaacagaaccggagcccacccccgacctctcagtcaacacaagc
cttgatgttcctgtagcagctccttccatcccagaccctgctcctgttcaaatccccata
cagcaaccaatgccagtgatgactgttcagtctgtgtccttagctgcagctcccaccgtg
acaccggcttctgttgatactgtgccacagatacagaccaccgtacccattgccagcaac
accagtggggtttccagtagtgccgtactcctgagctcacctctgactgtttctagttct
ccagctaccaccacacaacagcttacacagataactcatcagctcaccccacaacagtta
gcggccatcacacagcaagctggtggtaaaattgtgattctcaaaggtccccagggtcaa
gcacaggttctacaaactatatctggaaccacgggtcagacaactgggaaggtcatccgt
gttttgtctggaactccactcaaacccggcgtgtccatactgcaggggggtgcggtgttg
aatcaggcaagccctggacaggcccaggtcaaggtgggtggtgcaggggtgcagaggcta
ctgcagtctcccaatggaccagtcaaacaggtgttgcttacatccatgccacagcaggta
cagcagacacaaactcagccagttcaggtgaagatcccagctcaggcgcagatagctcaa
ggtcagactactgttcaagtccatccgcaggctcaaactgcccaaattcaagtccaacct
caagcccatgccgctcagagccaggtccagatgcagagtcaagtgcagctccagccagcc
atgcaagcccagacacagggaggggaagctaagcgcatcaccctggttcttcagcagccc
tctcagcctggctctgccacgacaacaggccaagctgttgcagctccgcagcaagtcgca
caggtccaacaagttcagaccgcacaagggggtcaacagcagcaaacaccggctccagct
agactggtgttgggtcagctccctagtggaaaactggtgctccaaggaagtcagctggca
gccctgacccaggctcggactgcaggccaggctggagggcagcccaaagtcctcaccatt
cagctgcaagtgcagcaacagcccaaccagcaaggaggagttaagtaccagctggtgtca
ggagcaggtaacgccggcagcccacagatgctgcagatatcccagagccaaggaggacag
agagtagcggtacccatcaaaatgcttctgcagccacagacaacctcagcctcgccttca
ggtggcgccgtctccgtggtgaaggtcatcaattcttcagcagcaggcccctccgccacc
accaccacctctccatcccaggccattcgcatctccaaggctccgggcgagccggcgtca
gtgcgacgcgtggagattctctgtaagcaggagaaagcaaatcgcatcgtggctgaagcc
atcgcacgggccaaagcgcgtggtgagaagaacctccccagagtcctgaaccaggacgag
cttccagccacacacaccttgtcagaaataggagggactgtgactgtggtgtcggctgct
aagaaaaaaagcagcagtggaggaagcaaaaagaaaagtccgttgtctggaggggcggtg
cacaaaactatggtaggagctaacaataaaggcaaagtcaagatacaaggaggcaccatg
acggtagctggaggcaccattttacctgcagctgggaacaagaacaaaaacaagactaaa
gcaaacaccattactctggtgggagcaaagaaaaggaagagaaatccatcttctgaccac
tctgatggggagctgagccctccttcacccgttgctctggaggatgacatgatcatgaag
aggcgctccaatcgtgtggtgaagaggaagaagtacacagaggacctggatatcaaaata
acggatgatgaggatgagcaggaagatgtggacgttactacgaccgcagcagcggtggcc
tccatcagtggagttgcggcagtgcagctgaaacaggaagtggagcttgatggggacgga
ctgcccagtatgcagttctttgtggagaatcctagtgaggaggatgcagccatcgtagac
aaagtcctgtctatgaggataaccaaaaaggaggtggctccaggccagtatgttaatgct
gaggaattctttgtaaaatacaaaaactattcatacctgcactgtgagtgggccacactg
aaccagctggagaaagataagaggatccatcaaaagatcaagaggttcaagaccaagcat
gctcagatgaggcacttgttccaggaggacgaggagccttttaacccggactacatggag
gtggacaggatcctggacgtgtctcacagcgtggacaaggacaatggagagccggtcatc
tactacctggtgaagtggtgctcgctgccctatgaagatgctacttgggaactaaaagag
gacgttgatgagacaaaagttgaagagttccgcaaaattcaaaaccggcagcctcgtctg
aagagaacggcacggcctcctgctgggtcatggaagaagttggaggagaccagagagtac
aagaacggcaacatcctccgagaatatcagctggaaggagtcaactggctcctcttcaac
tggtacaacaggcagaactgcatcctggcagatgaaatgggtctgggcaaaaccatccag
tccatcacgctgctgtcagaggtgtacgctgctggtgtccaaggccccttcctggttatt
gctcccctctccaccatcaccaactgggagagggagttctccacctggaccgacatgaat
gccatagtctaccatggcagcctcgccagccgacagatgatccagcagtatgagatgtac
tgcaaagatgacaagggacatctgattccaggcgcatacaaattcgatgccctcattacg
acatttgagatggtgctttccgactgcccggagctgagagagatctcctggcgctgcgtg
atcatcgacgaagctcaccgccttaaaaatcgcaactgcaagctgttggacagcttgaag
atgcttgacctggaacacaaagtgctgttgaccggcacgccgcttcagaacaccgtggag
gaactcttcagtttgcttcacttccttgagccagctcagttcccgtctgaaatcgaattt
cttagagattttggagacctcaagacagaggagcaggttcagaaactgcaggcgatatta
aaacctatgatgctgcgccgactcaaggaggatgtggagaagaacttggcacccaagcag
gagaccattattgaggttgagctgactgacatccagaagaagtactatcgggccattctg
gagaggaactttagtttcctgagtttaggagccaacagtaacagtaacgtccccaacctg
ctcaacaccatgatggagctccgcaagtgctgcaaccacccctacctcatcaacggcgca
gaggagaagatcgtggcggagctgcggcaggtgtatgaccccctggcccctgactttcat
ttgcaagccctgattcggtcagctgggaaactggtgcttctcgataagctgctgccccgt
ctgaaggctggaggccacaaagtgctcatcttctcccagatggtgcgctgcttggacatc
ctcgaggactacctcatcaacaagaggtacctttatgaacgaattgatggtagagtgcgt
gggaacctgcgacaggcagccatcgatcgcttcagcaagccagactctgatcgttttgtc
ttcctcctgtgtactcgtgctggtggtctgggcatcaacctgactgctgctgacacttgt
gtcatatttgactctgactggaaccctcagaatgatctgcaggcccaagcgaggtgtcat
cgtattggacagtcaaaagcggtcaaagtctaccgtctcatcacccggaactcctacgag
agggagatgctggacaaagcgagtctgaagctcggattggaccgggctgtccttcaaagc
atgagcggcaacaaagacagcagcgtcaacgggctccaacagttttccaagaaggagatt
gaagatctgttgaggaaaggagcctatgccgccatcatggatgagaatgacgaaggcagc
cggttctgtgaggaagatattgaccagatccttcagcgacgagccaccaccatcactatt
gagagtgaaggaaagggctctactttctccaaagccagctttgtggcctctgagaaccgc
aatgacatcgccctcgatgatcctgaattctgggagaagtgggccaagaaagcagatata
gacatggattctatcaatcagaagaacacactggtgatcgacacccccaggattcgcaag
cagacccgtcagttctccactttacgtggcgaaggtggagacctgtcagatctagagagt
gatgacgaatatccacctgctaattctagacattcgcgtgcttctcgccgctctgatcgc
cacagcggaggaggatacggacgcaccgactgtttccgggtggagaaacacctgctggtc
tatgggtggggtcgctggagggacatcttgtctcatgccagatgtaagaggcgtctgagt
gagcgtgacgtggaaaccatctgccgtgtcatcctggtcttttgtctgctgcactatcgt
ggtgatgagaacatcaagagtttcatctgggagctcatcactcctccagagaatggccga
gagcctcaaacactactaaaccactctggcctttccatccccgttccaagaggcaggaag
ggaaagagggtgaaggctcagagtacgtttgatgtgcagaaggttgagtggatccgcaag
tacaaccctgacactctgctgcttgatgacagctacagaaaacacttgaagcaccagtgc
aacaaagtgttgctgagggtccggatgctctactacctcaaacaggaggttattggtgaa
catgcagatgctgtcttgaaaggagctgagatcagggacgtggacatctggatgccagag
atggagcagcaggaggtgcctgctgtgtggtgggacgctgatgcagaccgctcacttctt
gctggtgttttcaaacatggttatgagatgtacaccaccatgcgagccgatccctgcctc
tgcttcatagaaagagtcggtcggcctgacgacaaagccattgatgctgagcagcaaacc
ggtgacgcggagctcggggatgaggctgaatatgataaatactcagaagatccagagttc
aagccagcatcgcgacacgccaaagatccttttgaagagcctgactctatgaacgtagag
gatgaggtttcagtggaagataaggtggaagccatcgtcacagagaacgtcatcagtcaa
agcggtgtgtgcgactggccctctagctcgtcgctaacggcacgactacggcggctgatc
acggcgtaccaacgcagctacagacaggagcagctgaagatagaggccgaggccaaaggc
gaccgcaggcgtcggcggtgcgaacaggccagcaagctgaaggagatcgctcgtcaggag
agacagcaacggtggactcggcgggaggagtgtgatttctaccgcgtggtttcaacgttc
ggagtagaaaagattaaaaaggatccagggtaccaggaggcagcagagccggagtttgac
tggacccgtttccgtacttttgctcgtttggataagaaaacggatgaaagcctgagtcgg
tatttccgctcctttgttgccatgtgtcggagggtgtgccacctccgcccgggtcgtatt
gaagatgtatcagagataccccagactgtggcccctatcacagaggagcgcgcttcacgc
accctttaccgcatcagcctcctgcgccgcctgcgggaacgcgtcctgcctcaccccgcc
ctcgaggagcgcctgctactggccccacgcacctctgagctgcccacctggtggagaata
ccagaacacgaccatcacctgatgctcggtgcttcgcttcatggcgtcagtcgcaccgag
ctctccatctacccagacacacagttcaccttcagttctgcccgtgaagagttcatccag
aaccagcagtctttaccaccaccaccaccccctccaccacccatcatgagcctcagccag
cccaagactgaggtggactcacctggagtgaaggaggagggaagtgatttgggcgtgcag
ttgtttggagatgaaattggtgcagaactgcaaagtacacccctgagccaccacgcgggg
aaaggccacagtcagggctggaacttcaagaggagcagagaaaggggagaaaaaaccgga
ggagggaggaagggtgagggaggttctgattctgattcagactctgattcaggctcgtcc
tcctcagggcgctcgggtagcagcgacgacagcggagacagtgatgaggacgtaggagga
ggtatgaaggtgggagatgtggatgaagataacagtttactctccatgactccttctcag
gacagtatatctcctcctgacccccttagagtggactggccaaaggaccgagtgctgatc
aaccgcctggacagtttatgtactctagtgttgacaggtcagtggccatcagggcggcgt
tacgtgtctgaagctcagctccaccctggctcagagctcggtggagaggagatggcctac
agcagggtgatccgtaaacccagcagcgtaccaagcgtccttgggacggacggagaggat
ggagagtttacggtaaaactcctcaaggaggagggcctcaagctgaccttctctaagcag
gctctcatgcccaacgggtcggggggggagagcagccgcaagaagcgaaaggatcaggag
ctaacagacctggacggactccgtgatgcgttggagcgtacgcctcgccgaagggaccct
ccaatatggttgaaagagaatcccgaatacgaggtggaaggagacatgctggagctgctg
gtcaacagaagtaagaggaagaggaggaggagggccgataaggccctcacagggaccgag
aaggttaaactcatcaacatgagaacagggaagaaggttggtgccgccttctgcccgatg
ctgcaagagctgagggagtatctggaggagaatcctgacattgctgttgcgcccgagtgg
tccgacacggttcgaaactctggcttactgcctgaatccttcttccaccgcctgctgacg
gagagctctgagattccgaagaaaagtcgtcggcgtcaccaccaccaccaccatcaccac
catcatcactaccacactccagagcccacccctgaagaccccaacctggatgcagttgag
gaggagacgttggtgtcagatggagcttacatgatggatgaggaagacctggagacgtcc
catcacttcctcaccagtccggactatgacgtgaaaatggagggcggtgacagcctttcc
cagggcgactatgacagctcagatcaagaagctctattagaggatgtgatcgtagcgcag
aaggactctgactcttcatcgagctccgaggactga
DBGET
integrated database retrieval system
