Nothobranchius furzeri (turquoise killifish): 107384274
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Entry
107384274 CDS
T05163
Symbol
col6a2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04510
Focal adhesion
nfu04512
ECM-receptor interaction
nfu04518
Integrin signaling
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107384274 (col6a2)
04518 Integrin signaling
107384274 (col6a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107384274 (col6a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
107384274 (col6a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nfu04147
]
107384274 (col6a2)
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107384274 (col6a2)
Exosome [BR:
nfu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107384274 (col6a2)
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107384274 (col6a2)
Hyaluronan
Extracellular matrix or blood plasma proteins
107384274 (col6a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Rv1476
Motif
Other DBs
NCBI-GeneID:
107384274
NCBI-ProteinID:
XP_015812916
UniProt:
A0A1A7ZCM4
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Position
sgr09:50159613..50185062
Genome browser
AA seq
1019 aa
AA seq
DB search
MEKNIMLGLEVAMLCLLFGALTHAQTGECSKKRKCPIDVYFTIDTSETIALQESPPGSLV
ESIKQFVEQFVNRLKDEEIKGSVQITWKTGGLHFSKKQEIISSIGSMPDFLTRLKAIRYL
GNGTYIDCAIKKMSSEMLAAPQESSSHSTLRFGVVITDGHVTGNPCGGIKVAAEDARDKG
IRMFVVAASNNIEETELREIANSPASVFRDEFMAVDLSQGRPKIDIATMDRIIKTMKHLA
YAECYKVSCLETEGLPGPKGHRGQKGAKGDNGEGGQKGEKGRAGDPGIEGPIGQPGTKGE
PGHKGEKGEIGTQGKKGVAGIPGRNGTDGQKGKIGRIGAPGCKGDPGNIGPDGHPGDVGE
RGLPGNDGEKGDPGRPGRPGSPGPPGSPGVKGETGSPGSPGAPGQKGNQGPPGDAGKIGD
EGRRGDIGPKGAQGQDGPKGEKGENGPDGPRGVSGETGNKGAKGDIGLPGPRGPSGALGE
PGRNGTRGDPGDAGPRGEPGQPGPKGDTGRPGFSYPGPRGPSGEKGQKGNRGARGSRGDC
GQKGDPGNKGTPGEAGEPGPHGEPGPRGPRGPSGRDGDPGPEGDPGLTECDVMNYIRETC
GCCDCEKRCGALDIVFVIDSSESVGLTNFTLEKNFVINTINRLGSFAKDPKSETGTRVGV
VQYSHSGTFQAIRLNDPKIDSLTSFKEAVKRLEWIAGGTWTPSALKYAYDNLIRDSRRAN
ANVTVVVITDGRFDPRDDDTLLTYLCNAPNVDVSAIGIGDMFEQIEENESLKSIACQKDD
RVMGMRRFADLVAEEFIDKIETVLCPEPLIVCPDLPCKSEPAVASCVQRPVEVIFMLDGS
ERMGQENYNRAKEFIENVARRLTLANGPTDERNARLALLQYGSASEQTVGFPLTHDLTVI
SDSLGNMTYMDSFSALGSAIIYAVNNLVIKENRRLARRNAEVSFVFITDGITSDNQLDEG
VSAMKRAEGVPTVIALGGDTDEEVLRKVSLGDSSAIFRGDGFAVLNKPAFFERFIRWIC
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaacatcatgctggggttggaggttgccatgctctgcctcctctttggagcc
ctgactcacgctcagacaggagaatgcagcaagaaaagaaagtgtcccatcgatgtgtac
ttcaccatagacacgtctgaaaccatcgccctgcaggagtcacctcctggatcgctggtg
gaaagcatcaagcaatttgttgagcagtttgtaaatcgtttgaaagatgaagaaatcaag
ggcagtgtacaaatcacctggaaaaccggaggacttcacttctccaagaagcaagagatc
attagctccattggttccatgccagacttcctcactcgccttaaagccatcaggtacctt
ggaaacggcacatacatcgactgcgccattaagaaaatgtccagtgagatgttggcagcg
ccgcaggagtcctcaagtcactcgaccctccggtttggtgtggtcatcactgatggtcac
gtgactggaaacccctgtgggggtattaaggtggcagctgaagatgctcgcgataaggga
atccggatgtttgtggtggcagcatcaaacaacatcgaagagactgagttaagggagatc
gccaactctcctgcgtcggtcttcagggacgaattcatggctgtggatctgagccaaggc
agacccaaaatagacatcgcaaccatggatcgtatcatcaagacaatgaaacatttggct
tatgcagagtgttacaaagtgtcctgcctggagacagaagggcttcctggtccaaaaggc
cacagaggacagaaaggagctaaaggagacaatggtgaaggaggacaaaagggagaaaaa
ggtcgtgcaggagaccctggcatcgaaggacccattggtcagcctggtaccaaaggtgaa
ccaggtcataaaggagagaagggagagatcggcactcaagggaaaaagggtgtggctggt
attccaggccgcaatggaactgatggacaaaagggtaaaattggacggattggtgctcca
ggatgtaaaggcgacccaggcaacataggtcctgatggtcaccctggagatgttggtgaa
cgtggtctccctggaaatgatggagagaagggggatcctggtcgccccggaagacccggt
tcccctggaccacccggttcacccggagttaagggagagacgggaagtcctggatctcct
ggtgcaccaggacagaaaggaaaccaaggaccccctggagatgctggaaaaataggcgac
gaaggaagaagaggagacatcgggcctaaaggggcccaagggcaagatggtcctaaagga
gagaagggtgaaaatggaccagatggcccgagaggagtctcgggtgaaaccggaaacaaa
ggagcaaagggagacattggattaccaggaccgaggggaccttcaggagcactaggagag
cctgggagaaatggtaccagaggtgaccctggagatgctggaccaagaggagagcctgga
cagcccggaccaaagggagacaccggaagacctggctttagctaccctggaccaagagga
ccatcgggtgagaaaggacagaaaggtaatcgaggagctcgtggaagcagaggggactgt
ggtcaaaaaggagatcctggaaataaaggaactccaggagaggctggtgagccagggccc
cacggggagcctggaccaagaggaccaagaggaccttctggtcgggatggagatcctggc
ccagagggagatcctggtctcactgaatgtgatgtcatgaactacatcagagagacctgt
ggctgctgtgactgtgagaaacgctgtggagccctggacatcgtcttcgtcattgacagc
tcagagtccgtgggtctcaccaacttcaccctggagaagaactttgtcatcaacaccatt
aacagactgggatcctttgccaaagaccccaagtcagagacaggcacaagagtgggtgtt
gttcagtacagccatagtgggacgtttcaggcaatccggctcaatgaccccaagatcgac
tcattgacttcattcaaggaagctgtgaagaggttagagtggatcgcaggaggaacgtgg
actccatcggctctaaagtacgcgtatgacaacctgatcagggacagtcgcagagccaac
gccaacgtcactgttgttgtcattactgatggacgttttgacccaagagacgacgatacg
ctcctcacatacctgtgcaacgctcctaatgttgacgtgagtgccatcggtatcggagac
atgtttgagcaaattgaggagaatgagagtttgaagagcatcgcctgccagaaggacgat
agggtgatgggaatgagacgatttgcggacctcgtagctgaagagttcattgacaagatt
gagaccgtgctctgcccagagcctctcatcgtatgtcctgatctgccatgtaaatcagag
ccggcagtggctagttgtgtccagaggccagtagaagtgatcttcatgttggatgggtct
gagaggatgggccaggagaactacaacagggccaaagagttcattgagaatgtggctcgc
cgcctcaccctggccaacggcccgaccgacgagaggaacgcccgcctggcgctgctgcag
tacggcagcgcgtcagaacagacagtgggcttcccgctcacacacgatctcacggtgatc
tcagattccctgggaaacatgacctacatggattccttttccgcgctgggcagtgccatc
atctacgccgtcaataatctggtgatcaaggagaatcgacgtttggcccgacgcaacgct
gaggtttccttcgtgttcatcaccgacggaatcacatccgacaaccagctggatgagggc
gtgagcgccatgaagagggcggaaggtgttcccacggtgatcgcattaggaggcgacact
gatgaagaggtgctacgcaaggtctcgctaggggattcgtcggccatcttcagaggagat
ggctttgctgtgctgaacaaacctgctttctttgagcgtttcatccgctggatttgctag
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