Nothobranchius furzeri (turquoise killifish): 107384437
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Entry
107384437 CDS
T05163
Name
(RefSeq) collagen alpha-1(XVIII) chain-like
KO
K06823
collagen type XVIII alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nfu04147
]
107384437
00535 Proteoglycans [BR:
nfu00535
]
107384437
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107384437
Exosome [BR:
nfu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107384437
Proteoglycans [BR:
nfu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
107384437
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107384437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
107384437
NCBI-ProteinID:
XP_015813204
LinkDB
All DBs
Position
sgr09:complement(46747837..46820632)
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AA seq
922 aa
AA seq
DB search
MVQGWSPALLLAALYWTAADLQEIDERDSTNVLDLLELIGDPFPPSVSLIPASQGRSAYN
FGPKANIGRRTVSFVPGPFYRDFAIIVMVRPASKRGGVLFAFTDPPQKVVQLGLALTPVR
TGIQSIVLYYTDKEEATHSLKAVSFSVPDMTAQWTRFTLVVEHDEARLFMDCEESERLTF
SRSPEKLTFLNESGIFIANAGNTGLEEFVGDIQQLEITDDLRVFDRQCEDNHPFASGYGS
GSDALNDRETEEVMMKKEQGRKQMGEGRVPDRAPPTEAPEAELDEYSGHITLTASNEKNP
LKEPRLTEEPGERALGQTRPSLKGERGDPGPSGPPGPPGPHYVLNKKLGTPGPPGPPGTP
GSPGQSGRDGLKGSKGEQGDMGPRGPQGFPGLVGNAGVKGEKGDSGIGLSGPPGLPGPPG
LPGLSGPPRSRSVPYGPDALGSGFEDLDVGVDVIMGPPGPPGPPGPPGPCAPHLSSALIP
GHSESFSPPGKDGPPGQPGKPGPAGTIGIPGPPGPLGEKGDQGVPGPPGPKGEGGSVGSS
GAPGPQGPIGPQGKVGPIGPPGPPGPPGPQGTKVFVEDLEGSGKSDMFINVGRGTQGPPG
LPGPPGESGSPGPPGLSVKGEPGQPGPEGPRGLAGMPGIRGQKGEKGSLGTKGDRGADGV
NITGPPGPPGPPGPGVNIEDLLLNMTTGLFNFTEIRGPPGPRGPDGLPGRAGFPGPRGQK
GDRGLQGIQGPAGIRGEKGEPGVTIAADGSLLSIPRGRQGPKGPKGGRGFRGIDGPMGPM
GPPGQKGEYGFPGRPGRPGIPGKKGDRGESVGLPGPPGPPGPPGPPGLPGKIPRLGETVF
PVRPRPHYKRGREALGKSMGIKGDKGDEGMPGEPGTPVPGFPDGFMGAKGNLGSKGEKGE
MGEPGQPGPPGLPGRSGLVQSP
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggttcaagggtggtctcctgccctgctgcttgctgcactgtactggacagctgctgac
ctgcaggaaatagatgagagagattccacaaatgttctggacctgctggaattaattggg
gacccttttcctccctccgtctcactcattcctgccagtcagggtcgtagtgcctacaac
tttggacctaaagccaacatcggccgacgaactgtttcctttgtgccaggaccattttac
cgggactttgccatcattgtaatggtgcgtccagccagcaagagaggaggcgtgctcttt
gccttcacagatcctcctcagaaggtggtgcagctgggtttggccctgactccggtccgc
acgggcatccagagtatcgtgttgtactacactgacaaagaggaggctacccacagcctc
aaagccgtttcttttagtgtcccagacatgaccgctcagtggacacggttcacattggtg
gtggaacatgacgaggcccggctcttcatggactgtgaagagagcgagcggctcacgttc
agtcggagtccagagaaactcaccttcttaaacgaatctggcatatttatagcaaacgca
gggaacacagggcttgaagagtttgtgggcgatattcaacagctggaaataacagatgat
cttagagtattcgacagacaatgtgaagacaaccatccttttgcctcagggtacgggagc
ggcagcgatgctctaaatgacagagagacggaggaagttatgatgaagaaggaacagggt
agaaaacagatgggggaaggaagagttcctgacagagctccgcccactgaggctccagag
gcggagcttgatgagtattcaggtcacattactttaacagcatccaatgagaaaaaccca
ttaaaagaaccacgtctgacggaggagccaggagaaagagctcttggtcagaccaggccc
agcttaaaaggagagcgtggagatccgggaccatcaggtccacctggtccccctgggccc
cattatgtactcaacaagaagcttggaacaccaggaccaccaggaccaccaggaactcct
ggatccccaggacaatcagggagagatggacttaagggaagtaaaggagaacaaggagac
atgggtccgagaggtcctcaggggtttccaggtctagttggaaatgctggagtcaaagga
gaaaagggagattcgggaattggtttatcaggcccacctggcctcccaggtccccccgga
ctcccaggactctctggaccacccagatcccgcagtgtaccttatggaccagacgctcta
ggatctgggtttgaagatctggacgttggtgttgatgtaatcatgggccctcctggtcca
ccagggcctccaggacctcctgggccctgtgcccctcatttgtcttcagcactgattcct
ggtcactctgaatcatttagcccacctggtaaagatggacctccaggccaaccaggaaaa
ccaggccctgctgggacgattggtattccaggtccacctggacccctcggagagaagggt
gatcaaggggtgcctggaccacctggaccaaagggtgaaggtggatctgtgggctcttca
ggagctcctggaccccaagggccaatcggtcctcaaggaaaagtgggtcctataggtccg
ccaggacctccaggtccccctggacctcaaggaactaaggtctttgtagaggatctggag
ggatctggaaagagtgacatgtttataaatgttggcagaggcacacagggccctcctggc
ctacctggaccaccgggtgaaagtggatctcctggaccaccagggctgtctgttaagggt
gaaccaggacagccagggccagagggtcccagggggcttgccggaatgccaggcatcagg
gggcagaaaggagagaaaggcagtctggggaccaagggtgaccggggtgctgatggagtc
aatatcacaggaccacctgggcctcctggacctcctggacctggtgtcaacattgaagat
ctgcttttgaatatgacaacaggcctcttcaacttcacagagatcagaggtccacccggt
cctaggggccctgacggtttacctggcagagctggatttcctggcccaaggggacaaaag
ggagacagaggccttcaaggaatccaggggccagcagggatcaggggagaaaagggagaa
cccggggttactattgctgctgatggatcccttctgtctataccgagaggccgtcagggg
cccaaaggccctaagggtggccgtggttttcgaggtattgatggacctatgggaccaatg
ggacctcctggtcaaaagggtgaatatggttttcctgggcgccctgggcgacctggtata
cctggaaaaaagggcgacagaggagaatctgtcggcctgccgggacctccaggacctcca
gggcctccaggtcccccaggtcttccaggaaagattcctagactcggtgaaacggtgttc
ccggtgcgcccaagaccgcactacaaacggggacgagaagccctgggaaaatcgatggga
attaaaggagacaaaggggatgaagggatgcctggagagccaggaacacctgtccctggt
tttcctgacggctttatgggagctaaaggtaatctgggatctaaaggtgagaaaggagaa
atgggtgagccaggccagcctggtccaccaggactcccaggaagatctggactagtgcaa
agtccttga
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