Nothobranchius furzeri (turquoise killifish): 107384485
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Entry
107384485 CDS
T05163
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nfu04121
]
107384485 (pdzrn4)
Enzymes [BR:
nfu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107384485 (pdzrn4)
Ubiquitin system [BR:
nfu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
107384485 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
107384485
NCBI-ProteinID:
XP_015813248
UniProt:
A0A1A8AYM9
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Position
sgr01:75713445..75772962
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AA seq
819 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGRDFSKAEHNEAVVETIRRDPIVVQVLRHTPTRAA
AAVVHKNRSSPQDVCVVNVCTQTDITFEHIMALAKLRPTTPPVPDVCPFLLSDSCQSIHT
MEHEFYECPEYLSNTPAEVERTEEYEYEEVELCRLNSQEKLGLTLCYRTDEEEDTGIYIS
QVEPNSIAARDGRIKEGDRILQINGCEVQDREKAVALLSSEEARSVTLLVTRPEIQLEEE
EEEAGWLVDEQQELAGELKMDILEERRKQREYSFQRPDEGDDDMNPDTATCSSNNQDSGF
GRSTDSPEFQPLLARVHRRSPAQCLRDRWRSEHPHTRQGIVGSQENEGARTHSSTQGSEG
VVSIRNAGCGVIGLENCFQQLLELKCQIRNGGECGVYSIRHSIECSLTEQGGGDRDDDDD
EGAGGGVEHELRLLNEELRNIELECQSIMQAHQLHQSHQQEYSEPTPCSPGLSLKDGHRR
LGRLADIREHPERSDSDKIREKDSSSAYNTAESARSTPIGMERSPEHSLQRHISITNQKN
LRLTPSAPSNPIPIPEPQSTPRSCRLADPGPVISSSPDQSNPSRSESDPALPADDERCEK
KRRSRESRRGFPYGSPSTLHGQGGSKQLQSYMQLLQQHSSLEYSQSQLSLLSVCRDSAHR
NGRAGEPRLEWKVKVRADGTRYVARRPARDRILRERALRIREERSGGMTTDDDAMSEMKM
GRYWSKEERKQHLARAKEQRRRREFMQKSRLECLKEGPASGAEGRKEINILELSHKKMMK
KRNKKILDNWMTIQELMSHGARVPEGSKVHNAFLSVTTV
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgggctgtaatttgtgcaccttgcagaaacgggaggaacattacaaactgctctacgag
attgcacaggttaatggacgggatttctccaaggcagagcacaatgaggcagtggttgaa
accatcaggcgagaccccatcgtcgtccaggtcctccgacacacccccaccagagccgcg
gcagctgtcgtgcacaagaaccgtagctcacctcaggatgtgtgtgtggtcaacgtttgc
acgcagaccgatatcacctttgagcacatcatggcactggccaagcttcggcccacaacc
ccgccagtgccggacgtgtgtcctttcttgctgtctgacagctgccagtctattcacacc
atggagcatgagttctacgaatgtccagagtatttgtccaacaccccagcagaagtggag
cggacagaggagtacgagtatgaggaagtggaactctgtcgattaaacagccaagaaaaa
ctcggtctgacgctgtgctaccgaactgatgaagaagaggacaccggcatctacatcagt
caggtagagccaaacagtatagcagcgagagacggacgcatcaaggaaggagaccggatc
ctgcagataaatggctgtgaagtgcaagaccgagagaaagcagttgccttgctgtcaagt
gaagaagcaagaagcgtcacactgctggtgacaaggccagaaatccagctagaggaggag
gaggaggaggctggatggctggttgatgagcagcaggagcttgctggggagctgaagatg
gatatactagaagaaaggaggaagcagagagagtacagctttcagaggccagatgagggt
gatgacgatatgaatccagacacagcaacgtgctcctccaacaaccaggacagtgggttt
gggcgaagcacagacagtccagagttccagcccttgttggccagagttcacaggaggagc
ccggcccaatgcctgagggatcgatggcgatcagaacatccgcatacaaggcaagggatt
gttgggtcacaagagaatgaaggggcaagaacacattcttcaacgcagggcagtgaaggt
gttgtgagtattcgcaatgccggatgtggagtcataggtctggagaactgctttcagcag
ctcctggagcttaagtgccaaattcgcaatgggggtgaatgtggggtgtactccatacga
cacagcatcgaatgtagcctcactgaacaaggtggaggcgacagagatgatgacgatgat
gagggtgcagggggaggggtggagcacgagctgaggctgctgaatgaagagctgcgtaac
attgagttggaatgtcagagcatcatgcaagcccatcagctccatcagtcccaccaacag
gagtactcagagcctacgccctgctcaccaggactgagccttaaagatggacacaggcgg
ctcggaagactggccgacatccgtgagcacccggagaggtcagacagtgataagatccgt
gagaaggacagctccagtgcctacaacacagcagagagtgctaggtctaccccaataggc
atggagagatctcctgagcactccctgcagagacacatcagcatcactaaccaaaaaaac
ctcagactgaccccctctgccccctctaatcccatccctatccctgagcctcaaagcaca
cctagaagctgcagactagcagatcctggtccagttatctcgagcagcccagatcagagc
aatccttccagatctgagtcagatccagctttgccagcagatgatgaaaggtgtgaaaag
aagaggaggagcagagaatctaggagagggttcccctacggttctccatccaccttacat
ggccaaggaggatccaaacagcttcagagctatatgcagctcctgcaacagcactcgtca
ctggagtactctcagagccagctgagtctcctcagtgtttgtcgagattcagcgcaccga
aacggacgtgccggagaacctcgtctggagtggaaggtcaaagttcgcgctgatgggaca
cggtacgttgcacggaggcctgctcgtgaccgcatactgagggagcgagcgctaaggatc
agggaggagcggagcggaggcatgactacggatgacgatgccatgagtgagatgaagatg
ggtcgctactggagcaaagaggagaggaagcagcatttagcaagagccaaggagcagaga
aggaggagagagttcatgcagaaaagtcgccttgaatgtctaaaagagggaccagcgagc
ggagctgagggcaggaaggagatcaatatcttagagctcagtcacaaaaagatgatgaag
aaacgaaacaaaaagattctggacaactggatgaccatccaagaactgatgagccatgga
gccagagtcccagaagggtcaaaagtacacaatgccttcctttctgtcaccactgtgtaa
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integrated database retrieval system
