Nothobranchius furzeri (turquoise killifish): 107384690
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Entry
107384690 CDS
T05163
Name
(RefSeq) collagen alpha-2(V) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107384690
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107384690
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107384690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
107384690
NCBI-ProteinID:
XP_015813550
LinkDB
All DBs
Position
sgr10:complement(7995548..8035129)
Genome browser
AA seq
1584 aa
AA seq
DB search
MDPSICSRITVCLVLTLAQVIAVTCQEETRSDICTENGNVYANKDLWNPEPCRVCMCDMG
SIVCEDMVCEDLGDCQKTVIPEGECCPVCLGAASTLTPSTDPQTAVDDNEKSCEADGEVY
QHNDIWKPLPCRVCVCDNGVAICDEIQCETLANCEKVVTLEGECCPVCDNFASAGGRIEI
MGFQGEKGEPGEIPYVVGLPGLPGPAGPPGGQGRTGPRGFKGRRGFQGPPGFDGEPGVPG
NPGEPGPPGEHAAPGGNLALHMSSGFNEKSSVSRMVTAERGEAGPRGLQGPPGPPGATGG
QGIPGEAGDPGPMGEPGHRGPDGPPGKPGPDGEPGPAGAPGEVGFPGSVGARGFPGLPGL
PGRKGPKGSVGLDGPKGELGAVGTKGTSGTPGTMGPPGPLGPAGLQGERGRIGPTGPLGK
RGTPGHVGKPGPLGPIGIPGMPGFPGSPGLKGEAGPTGGRGSQGQQGPRGDGGHAGPPGP
TGQQGASGPDGAPGARGSPGIAGVQGPPGLVGPAGPPGPQGTTGAAGPKGQLGEGGIPGL
KGEPGLKGERGEHGLPGQIGPLGEDGKRGPRGDAGSIGPPGPPGEAGSPGNRGFPGADGL
PGQKGAQGERGLPGSPGGKALPGDPGRNGEPGLTGARGLTGPIGAQGAEGRQGPMGSAGD
DGKPGPAGPVGNRGAAGTMGLPGPKGFTGDAGKAGEAGSPGAPGQRGLNGKDGETGAAGS
TGPAGPAGKRGEQGPQGVSGFQGLPGPPGPPGEGGKPGDEGLAGEVGGVGTTGPRGERGP
PGERGETGPNGLQGPKGSPGAPGTDGPKGNPGPKGAAGEPGGSGLQGVAGERGTPGPSGP
KGDPGSVGEKGMEGKAGADGARGLPGPVGPAGPSGPNGEKGETGPPGPTGRRGTRGIPGS
TGDPGPIGAAGFAGPPGLDGQPGVKGETGEPGQNGEAGAPGPQGMAGKPGEQGPVGVTGL
KGGRGTQGQAGSPGFPGLPGGVGPPGSIGATGADGPIGAPGKKGPAGIRGENGALGRQGE
SGPPGPAGSPGEKGESGEDGPPGPDGPPGPAGASGQRGVVGQPGVRGERGLEGLLGPAGQ
PGKPGTSGAQGSKGPAGGVGLPGPTGPRGDAGPEGIAGAEGAPGKDGLVGERGDKGNPGP
EGLPGDLGSPGNEGPVGLTGGPGQRGETGTRGPLGPQGPSGVRGKVGPQGPQGEKGGAGA
QGEQGQKGHRGFTGLQGLPGTTGSTGDPGDRGIVGPAGQRGPPGVTGPPGQGGNIGHPGA
AGAPGSRGTIGEIGAQGPPGEAGPPGPPGPPGPPTTAVEELFSVDYQENSDVQEAVDLGE
YDAAADLPPPPEFNRDEAQPNKNILQAETGVRATLKTLSGHLHNLRSPDGSKTNPAKTCQ
DIRQCYPQKKSGQYWLDPNQGSTKDAIRVFCNMETGETCISANPASIPRKSWWTKPSPSP
NKPIWFGADMNSGSKFLYGNKEEQPNVVAVQLKLLQLLSKESHQNITYHCKNSVAFKDEK
GSSLKRALVLRGANGQEIRAQGNPRLRYTVVEDGCSKSNGEWSRMVIEYRTQTSTRLPVV
DLAPMDVLKADQEFGLDIGPVCFS
NT seq
4755 nt
NT seq
+upstream
nt +downstream
nt
atggacccctcgatttgctctaggattaccgtgtgtctggtcctcaccttggctcaggtg
atcgccgtgacgtgccaagaggaaaccagaagtgatatctgcacagaaaatgggaacgtc
tacgccaacaaggacttgtggaacccggagccatgtcgggtgtgcatgtgtgatatggga
tccatcgtgtgtgaggacatggtctgtgaagaccttggtgattgtcagaaaacggtgatc
ccagagggggaatgttgtcccgtgtgtcttggtgcagcttctacacttacaccaagcacg
gacccacagacagctgtggatgataatgagaaaagctgcgaagctgatggggaagtctac
caacacaacgacatctggaaacccttgccatgtcgcgtgtgtgtctgtgacaacggtgtt
gctatctgtgacgagattcagtgtgaaactttggcaaattgcgagaaggtcgtgaccctt
gagggagagtgctgccccgtgtgtgacaactttgccagcgccggcggcaggatagaaatt
atgggtttccagggagagaagggtgaaccaggtgaaatcccttatgtggtggggctgcca
ggacttccaggaccagcgggccctccaggaggtcaaggacggaccggaccaagaggtttt
aagggcagacgcggattccagggacctccagggtttgatggtgagcctggtgtgccaggt
aacccaggagaaccaggaccgcctggagaacatgctgctcctgggggaaacttggcatta
cacatgtcttcagggttcaacgagaagtcgagtgtgtctagaatggtaacagcagaaagg
ggagaagcaggaccaagaggacttcaaggccccccgggccccccaggtgcaactggtggt
caaggaattcctggagaggctggagatccaggaccaatgggtgagccaggtcatcgaggg
cctgatggaccaccaggaaaaccaggacctgatggagaacctggacctgcaggtgcacca
ggagaagtaggatttccaggatcagtgggtgcaagaggattcccggggctcccaggtctt
ccaggacggaaaggccccaaaggaagtgttggtcttgatggacccaaaggcgagctcgga
gcagtcggaaccaagggaacttctggtactccgggtaccatgggtccccccggcccgctg
ggaccggctggtttgcaaggagaaagaggcaggattggaccaaccggtcctttgggtaaa
cgtggtacaccaggacatgttggcaaacctggacctctgggtcccataggaatcccagga
atgcctggatttcccggtagtccgggattaaagggtgaagcaggaccaacaggtgggaga
ggaagccaaggtcagcaaggccccaggggggatggcggacatgcaggaccaccgggaccc
acagggcagcagggtgcttccgggcccgatggagcacctggcgctcgtggctcacctggc
attgcaggtgttcagggtccaccggggttggtgggtccagctggccctcctggcccccag
ggaaccacgggagcagcaggaccaaaaggccaattgggtgaaggtggaattcctggacta
aaaggagaacctggcctcaaaggagagagaggtgaacatggtctgccgggccaaataggt
cctttgggagaagatggaaagcgtggacccagaggtgatgctggatccatcgggcctcca
ggaccaccaggagaggcagggtcaccaggaaacagaggcttccccggtgccgatggctta
ccaggccagaagggtgctcaaggagaaagagggctgccaggatctcctggtggtaaagct
ttacctggagacccaggacgcaatggagagccaggtttaacaggagcacggggtctcact
ggacctattggggctcagggagcagaaggaagacaaggaccaatgggctcagcaggagat
gatggtaaaccaggcccagctggtcccgttgggaacagaggcgctgctggaaccatgggc
ctacctggaccaaagggcttcacaggtgatgctgggaaggctggagaggctgggagtccc
ggagctccaggtcaaaggggactaaatggaaaagatggagagacaggtgctgctgggtca
acaggtccagctggtcctgctggaaaaagaggagagcagggacctcaaggagtgagcggt
ttccagggtttacctggaccaccaggcccacctggagagggggggaaaccaggtgatgag
ggtcttgctggagaggttggtggtgttggaacaacaggtccaagaggagaaagaggtcca
ccaggagaaagaggtgaaacaggtcccaacgggctacagggacccaaaggaagcccagga
gcaccaggaaccgatggaccaaagggtaacccaggtcctaagggtgcagctggagagcca
ggtggttcaggacttcagggagttgcaggggagagaggcacaccaggaccctcgggtcca
aagggagatcctggttctgttggcgagaaaggaatggaaggaaaagcaggagctgatggt
gcgaggggacttcctggtcccgttggacctgctggtcccagtggaccaaacggagaaaag
ggtgaaacaggccctccaggaccaacaggacgtcgaggcacaagaggaatccccggttct
actggtgatcctggtccaataggagctgctgggtttgctggacctcctggtttggatggt
cagcctggggtcaaaggtgaaacgggagagcctggccagaatggagaagcaggagctcct
ggaccacaggggatggctgggaaacctggagaacaggggcctgttggtgtgacggggctg
aaaggaggcagaggaacacaaggtcaagctggatctcctggttttcctggtcttcctgga
ggagttggtcctcctgggtcaattggtgctacgggggcagacggacctataggtgcacca
ggaaagaagggtcctgccggaatacgaggtgagaacggagctctgggacgtcaaggtgag
agtggaccaccgggtccagcaggcagccccggagaaaagggagaatctggagaggatggg
cccccgggtcccgatggtcctccaggacctgctggtgcctcaggtcagagaggagttgtg
ggtcagcctggagtaagaggggagagaggtttagagggtctgcttggtccagctggtcaa
cctggaaaacctggaacttctggagctcaaggctcaaagggtccagctggtggggtaggt
ttaccaggacccaccggaccaagaggagacgctggaccagagggtattgctggagcagag
ggagctcctggtaaagatggtctcgtaggagaaaggggagataagggaaacccaggtcca
gaggggctgccaggtgacctggggtctccagggaatgagggtccagtgggactaacagga
ggtcctggacaaagaggtgaaactggcacaagaggtcctctgggaccccaaggaccttct
ggggtccggggtaaagtgggccctcaaggaccccagggagagaaaggtggtgctggagcc
caaggagagcagggtcagaagggtcacagaggatttacaggactccagggtctaccagga
acaactggctccacgggagacccaggagatcgaggaatagttgggccagctggacaaagg
ggacctccaggggtcactggtccaccagggcaggggggaaatattggccatcctggagca
gcgggagctcctggaagcagaggaaccatcggagaaattggagctcagggtccacctgga
gaagctggacctcctggccctccaggaccaccaggacctcctaccacagcagtggaggag
cttttttcagttgattatcaggagaacagtgatgttcaggaagcggtggaccttggagag
tacgatgctgctgctgatcttcctcctcctccagagttcaatagagatgaagcccagccc
aataaaaacatcctgcaagctgaaacaggcgtccgggcgactctaaagaccctcagcggc
cacctccacaaccttcgcagtcctgacggcagcaagacgaatcctgcaaagacctgccag
gacatcagacagtgttaccctcagaagaagagtggacaatactggttagatccaaaccaa
ggaagcaccaaagatgccatcagagtcttctgcaacatggaaaccggagaaacctgcatt
tcagcaaatccggccagcattccccgtaaatcctggtggaccaaacccagtcccagtccc
aacaagcccatctggtttggagcagatatgaacagtggatctaaattcctctatggcaac
aaggaggagcagcccaacgtggtggccgttcagctgaagctcctgcagcttttatcaaaa
gagtcgcaccagaacatcacctaccactgcaagaacagcgtggccttcaaagacgagaaa
ggcagcagcctgaagagggctctggtcctccgaggcgccaacggccaagaaatcagagct
cagggcaaccccaggctgagatacaccgtcgtggaggacggctgctcgaaatccaacgga
gaatggagcaggatggtgattgagtacaggactcaaacctccaccaggcttcctgtggtg
gacttggcccccatggatgtcctaaaagctgaccaggagtttggtctggacatcgggccc
gtgtgcttctcttaa
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integrated database retrieval system
