Nothobranchius furzeri (turquoise killifish): 107384752
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Entry
107384752 CDS
T05163
Symbol
focad
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107384752 (focad)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107384752 (focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
Motif
Other DBs
NCBI-GeneID:
107384752
NCBI-ProteinID:
XP_015813677
UniProt:
A0A1A8UFH6
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All DBs
Position
sgr10:complement(10127395..10210291)
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AA seq
1803 aa
AA seq
DB search
MMESLKMQLDFSSPIIQAQGVRSLVAAVLKEKGSNGPIMQSSTQGPALEALWQQCCSDCA
LVRSACCDAVVLLVDQGHADLQYILSNVLILLPSARNTQGLIRIMGQMLKMQADQEHGKT
PFTCPYSVRSNPHPFIKVLENRVDCWPALQLEIDDLICQAVNRNQSSYITLLVPFLRYLY
CEPQRQPQHAPLRQSLLRVLLPTTPRAGAVPASPASDSLLLCLCQLVPHMQLDCVEAVLE
LCGFVSALLPTLIEAPGEFWVKERAGLVLLLLCACEQCLKLNGDCRSLLLLIQQLSPACK
QDLPVDELMMGIALLLLEAPAAQQSCLLSLALELAPEQTELLPWLSPVLVLPVLQLLCFS
SLTEPLAEPTTHNLNTNLGRSLLRSISKPTAEAPQPGPVAVLPLSPWYSQLRAALSVLGK
VAHSPAAAVDWLLTVNSTLTSNQRLSSSLTLMVAYLIITGEADVCHLALRASQAIAAADP
CQAPSILSVVLFKMSKEKSPGLIHACLNCLPHLGTHKLCVPMVLQTLHTLASDSKLRAVS
MRLMTALWKKQDRVYPELQCLLSLKEPRELVGQDTQWEQILARAACLRDVCRERPYQHGG
DMLAALSFTLKQSSRPDLVTPAALALQALQELCRAEVVDIISTWKSLGPELSCDTRPLMI
KAIAELLSLVPQLAVKSEDYEIMKTEVVGFLWSYALNKDPGVASCGYKALAAFPEAAHTI
LHLPETVRPALKMSEAAEGNDGADQNNEDEEKDYSVPGSSYLKLMALTSSAVLPTFELFL
TSLVKQEMRQMPRGVYFSALSGVGLRSDQGKTVAAIPSFMLKTYEKNKQPGLKPGLAAGL
LLCYEIPVQTDRSGRPIDRFLSSRSRNYQQTLTALIHEVNIQPSEWHRALLLPQAWRAFV
SRAFHAALQGRRADLKMQQKQDKGNHQELQYQQHCAWLWARDQLADVIKAATKDSPVVQG
NSILALSALAAVLAQYESNLPSDSNGSLGAGPEFVPTASWLSMVLDTLLSIISSSYKAGG
QVFPWFLHRSYSGENTASAIARSCASLALSLLVPVLVVWKKDGLVQVLSALQACLPGSPA
ADDSQAVQFHSGLALGLVLSSLQHQRLSDVSAQKDMDLLFSSLQVLESCSFNPNLEYNTG
CVLGLGLVLSALCGSGHVGHRVHITQNLDKLLANLQDSSGQNRMLQEVLSYSVACVSVSA
FSGGLIDAAKAEEVMSTLRTLTEESQQTPGFSLALGLVVHGLSVSGHGKAEDIHPRLLAA
WIKILLAEGCPTMQRLAAASGLVALVGSENHLIQMKLEMELSSQQQSRLNEVIRAITQII
TFSAAIGLQSNCACLIGHLYLAHVSTSHSHTAVPQDFSYLSEKSVIRSIIDFITESGKKG
PEFSRPVLVETALTSLASVGLSFQYPPVNWSAVLSPLMRLSFGGVVQHQCMVLAASQAHS
SQSASLFLGSWLSPPLVHSLSLQTQAHLYETLGLWMKHVAEDKLQFYVESFGLQQFQDDL
RPQRLSLCHSLLKGLTQAMALPNPRNHCWTILCSTTEKVFKVLPNHIQDAEVELYVGVAK
CLSEMSDTEIDRIAHVSASEMEKTCFTLAYLTSQGRVPLLSLNDVIAGVLQGWPSHRVGW
LLLQCFYQCRLAAGSHTGVSNRMEWLLELMGHIRNVAYGATPVACGDPKMATDFLFQLFS
AAVVSWGDHFMPLLYGVRAQWFPWRAESRSPRLKHQLYGEDSLTAGILQQSLMGMSHSLP
LLLHKEPWCNQTHKFLDWLLSISEGPEQNLSATTIDTAKAALMSLKSSAEFKKKAVWTRV
YGW
NT seq
5412 nt
NT seq
+upstream
nt +downstream
nt
atgatggagagtttgaagatgcagttagatttctccagccctatcatacaagcccagggt
gtgagaagcctagttgctgctgtgctaaaggaaaaaggatcaaatggaccaatcatgcag
tcctccacccagggcccagcgttggaggctctgtggcagcaatgctgcagcgactgtgca
cttgtgcgttcagcctgctgcgatgccgtggtgttgttggtggatcagggccatgcagac
ctgcagtacatccttagcaatgtcctcattctcctgccttctgcaagaaatactcaggga
ctaatccgaatcatgggacaaatgttgaagatgcaggctgaccaagaacatgggaaaaca
cctttcacctgtccgtattctgtcaggagcaatcctcacccattcatcaaagtcctggag
aacagagtggactgctggccagctctgcagttggagattgatgacttaatctgtcaggct
gttaacagaaaccaaagtagctacatcaccttgctggttcccttccttcggtacctgtac
tgcgagcctcagaggcagcctcagcacgcccctctccgtcagagtctcctcagggtgctg
ctacccacaacgcctcgggctggagcagtgccagcctcgccagcgtctgacagtctgctg
ctctgtctgtgtcagctggttcctcacatgcagctggactgtgtggaggcggttctggag
ctctgtgggtttgtcagcgctttgcttccgactcttattgaggctcctggagagttctgg
gtaaaagagagagctggactagttctgctgctgctctgtgcgtgtgagcaatgcctgaaa
ctaaacggagactgcagatcgctcctcctgctaatacaacagctctcgcctgcctgcaaa
caggatctgccagtggatgagctgatgatgggcatagccctgctcctgcttgaggcccct
gcagcacagcagagctgcttgcttagtcttgcgctggagttggcccctgagcagacagag
ctgttgccctggctcagtccggttctggttcttccggtgctgcagcttctctgcttttcc
agcctcaccgagccactggctgagccaacaacacacaacttgaacaccaatctcggccgc
agcttgttacgcagcatcagcaaaccaacagctgaagctccacagcctggccctgtggcg
gtgcttcctctcagcccctggtacagccagctccgcgcagctttgtccgtgcttggcaag
gtcgcccacagtccagctgcagctgttgattggctgctgacggtcaactcgaccctgacc
tccaaccagcgcttgtcgtcctccctcactctcatggtggcctacctgatcatcactggc
gaggctgatgtttgccacctggctctgagagcaagtcaagccattgctgcggccgacccc
tgccaggctccctccattctttccgttgtgctcttcaagatgtcaaaggagaaaagtcca
ggtctcattcacgcctgtctcaactgcctgccacaccttgggactcataagctctgtgtc
cccatggtgctgcagactctacacacactggcctctgattccaaactcagagcggtgtcg
atgcgcctaatgacagctctgtggaaaaaacaggaccgggtttatccagagctgcagtgt
ctgctcagcctgaaggagcccagggagctggtggggcaggacactcagtgggagcagatc
ctggccagagctgcctgcctcagggacgtctgtagagagaggccgtaccagcacgggggg
gacatgctagctgccctttctttcactctgaagcagagcagccgaccagacctggtgacc
ccagctgctctggccctgcaggccctccaggagctgtgcagagcagaggttgtggacatc
atttccacctggaagagtcttggtcctgagctgagctgtgacacccgtccactgatgatt
aaagccatagccgagcttctgtcgctggttccccagctcgccgtgaagtcagaggactat
gagataatgaaaacggaggtggtgggatttctctggagttatgctttaaacaaggatcca
ggtgtggccagttgtggctacaaggctttggcagcttttcctgaagcagctcacacaatc
cttcacctacctgagacagtcagaccggcactgaagatgtctgaagcggcagaaggtaac
gatggagcagatcagaacaacgaggatgaggagaaagactactcagttcctgggtcttct
tacctgaagctgatggctctcacctccagcgctgtcctaccaacctttgagctcttcctg
acatcactggttaaacaggagatgaggcaaatgcctcgaggagtgtacttctctgctctg
agtggagtgggattacgttcagaccaggggaaaactgtagcagcgatcccgtcgttcatg
ctgaagacttatgagaagaacaagcagcctgggctgaagcctgggttagcagctggactg
ctgctctgttatgagattcctgtgcagacagaccgcagcggaaggccgattgatcgcttc
ctgtccagcagaagtcgcaactaccagcagactctgacagctctcattcatgaggtaaac
attcagccgtctgagtggcaccgggctcttcttctgccccaggcatggagagcgtttgtc
agccgagctttccacgcagccctgcagggtcgacgggctgatctgaaaatgcaacagaag
caagacaaaggaaatcatcaagagctgcagtaccaacagcactgcgcctggctgtgggct
cgagatcagctggcagatgtcatcaaggctgctacaaaggacagtccggttgttcaggga
aactccatcctcgctctgagtgccctggctgctgtcctggctcagtacgaaagtaacctg
ccctccgacagcaacggcagcctcggggccggaccagagttcgtgcccactgctagctgg
ttgtccatggtgctggacaccctgctcagcatcatcagtagcagctacaaggccggtgga
caagtgttcccctggttcctgcatcgctcctactcaggtgagaacacagcgagcgccatc
gctcggtcctgtgccagcttggccttgtccctgcttgttcctgtgctggtggtgtggaaa
aaggatggtctggtccaagttctctcagctctgcaggcctgcctgccaggctcaccggcc
gctgatgactcccaggctgtccagttccattcaggtcttgctcttggcctggttctgtcc
agtctgcagcaccaacgcctcagtgatgtttctgctcagaaggacatggatctgctcttc
agttctctacaagttctggaaagttgttcctttaaccccaacttggagtacaacaccggc
tgcgtgttgggcctgggtctcgttctctcagccctttgtggtagtggacatgttggtcat
cgtgtccacatcacgcaaaaccttgacaaactcctggccaacctgcaggacagcagcggc
caaaaccggatgctgcaggaggtgttgtcgtactctgtggcgtgtgtgagtgtctctgcc
ttcagtggaggtcttattgatgctgctaaggctgaggaggtgatgagtactctgcgcaca
ctgactgaggagagccagcagacccctggcttctctctggctctggggttggtggttcac
ggcctgtcggtgtccggccacggtaaagctgaagacatccaccctcgtctgctggctgct
tggatcaagatcctactggcagagggctgtcccactatgcagcgactggctgctgccagc
ggcctggtggctttggtgggatccgagaatcacctcatccagatgaagctggagatggag
ctctcctcccagcagcagagcagactgaatgaggtcattcgtgccatcacacagatcata
accttctcagcagccattggtctgcagtccaactgtgcctgtctgattggtcatctgtat
ctggctcatgtgtctaccagtcacagtcacacagcagttcctcaagatttcagttacctc
tcagagaaaagtgtcatcagatccataattgacttcatcacagaatctgggaaaaaaggt
ccagagttctcccgtccagttctggttgagacggctctgacctcgctggcttcggtagga
ctcagcttccagtatcctccggttaactggagcgctgtcctgtctcctctaatgagatta
agctttggaggggttgttcagcatcagtgtatggttctggcggcgtctcaagctcattcc
tcacaaagtgcctctctcttcctcggctcctggctgtcaccccccctcgtgcacagtctc
agtctccagactcaagcccacctgtatgagaccctgggtctgtggatgaagcacgtggct
gaggacaagctccagttttacgtggagagttttggtctgcagcagttccaggatgacctt
cgaccccagcgactgtctttgtgccactctctgctgaagggcctcactcaggccatggcc
ctccctaacccccgcaaccactgctggaccatactttgctccaccacggagaaggtcttc
aaagtgctacccaaccacatccaggatgccgaggtggagttgtatgtgggcgtcgccaag
tgtctgtctgagatgtcagacacggagatcgacaggatcgctcacgtttctgcgtctgag
atggaaaagacctgcttcacgctggcgtacctgacttctcagggcagagttcccctcctc
agtctcaatgatgtcatagccggggtgctacagggttggccgagccacagagtgggctgg
ctcctcctgcagtgcttttaccagtgccgcctggctgccggttcccacacaggcgtttca
aacagaatggagtggctgttggagctgatgggacacattcgaaatgttgcttatggtgca
actcctgtcgcctgtggagatcctaaaatggccacagacttcctgttccaacttttttca
gcagcagttgtttcctggggggaccactttatgcccctcctttatggcgtcagggctcaa
tggttcccgtggcgagcggagtctagatcccccaggctcaaacaccagctgtatggtgag
gattccctgacagctggaatcctgcagcaaagcctgatgggaatgtcccacagtctgcct
ctgctgctgcacaaagagccatggtgcaaccagactcacaagtttttggactggctcctc
agcatatcagaaggacctgaacagaatctgtcggccacgaccatcgacacggccaaagct
gctctgatgagtctgaagtcttctgctgagttcaagaagaaagctgtctggaccagagtt
tatggctggtga
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integrated database retrieval system
