Nothobranchius furzeri (turquoise killifish): 107384832
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Entry
107384832 CDS
T05163
Name
(RefSeq) syndecan-4-like
KO
K16338
syndecan 4
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04512
ECM-receptor interaction
nfu04514
Cell adhesion molecule (CAM) interaction
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107384832
04514 Cell adhesion molecule (CAM) interaction
107384832
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107384832
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
nfu00535
]
107384832
Proteoglycans [BR:
nfu00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
107384832
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
107384832
NCBI-ProteinID:
XP_015813787
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All DBs
Position
sgr10:13339656..13356166
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AA seq
209 aa
AA seq
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MIRLCLVLILSASVFSESQARETETWMPMSTTQTVAMATQDGSLEASGDPSNDFGFTDDD
EDDEDEYVDEDYEDLSGSGQGETSESTLGEAVPTEQPGDDNRIPELKATVGPTLDEVELV
RNNEIHLGSKPGPNDDNLSNVLMSQAKGDSIFNKTEVLAALIAAGAVGLMFAMLLILLLI
YRMKKKDEGSYDLGKKPIYKKAPTTEIYA
NT seq
630 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctctgcctcgtgctgattctgtccgcctccgtcttctctgagtcgcaggcg
agggagacagaaacatggatgcccatgagcaccactcagactgtcgccatggcaacgcag
gacggcagcctggaagcatcaggagacccctccaatgactttggcttcactgatgatgat
gaggatgatgaagatgagtatgtggatgaggattacgaggatctctctggatcgggtcaa
ggagaaacaagcgagtcgactctgggagaggctgttcctacagagcagcctggtgatgat
aaccgaatccctgagctgaaggccactgtaggaccaaccctcgacgaggttgaactcgtc
agaaacaatgaaatccacctggggagcaaacccgggcccaacgacgacaacctgtccaat
gtcctcatgtcccaggccaagggggacagcatctttaacaagactgaggtccttgcagct
ctgattgcggctggcgccgtgggcctgatgttcgccatgctcctcatcctcctcctcatc
taccgcatgaagaagaaggacgagggcagctacgacctggggaagaagcccatctacaag
aaggcccccaccacagagatctatgcatag
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