Nothobranchius furzeri (turquoise killifish): 107384940
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Entry
107384940 CDS
T05163
Symbol
rae1
Name
(RefSeq) mRNA export factor isoform X1
KO
K14298
mRNA export factor
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107384940 (rae1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107384940 (rae1)
03036 Chromosome and associated proteins [BR:
nfu03036
]
107384940 (rae1)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107384940 (rae1)
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
107384940 (rae1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_EML_2
Beta-prop_WDR3_1st
WDR55
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
EIF3I
WD40_Gbeta
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_Aladin
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
ANAPC4_WD40
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_ACSF4
NBCH_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR41
Beta-prop_HPS5
WDR90_beta-prop_4th
B-prop_COPA_B_2nd
ExoI_SH3
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
107384940
NCBI-ProteinID:
XP_015813953
UniProt:
A0A9D2XS70
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All DBs
Position
sgr10:complement(17760799..17768387)
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AA seq
369 aa
AA seq
DB search
MSLFGANSGFGTGGTGVFGSTTTDTHNPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIAG
SWANDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQA
MQIAQHEGSIKSIHWIKAPNYSCIMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVY
PMAVVATAERGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTTTPQDIYAVNAISFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPITACCFNHNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAE
ELKPRNKKW
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgtttggagcaaactctggttttgggacaggaggaactggagtatttgggagc
acgacaacagacacccataaccccatgaaggatgttgaagtgacttcacctccagatgac
agcatcagctgtctggccttcagccccccaaccatgccaggaaacttcctcatcgcagga
tcttgggctaatgatgttcggtgttgggaggtgcaggacaacggtcagactgtccccaaa
gcccaacagatgcacacaggcccagttctggatgtctgctggagcgatgatggcagtaaa
gtcttcactgcttcttgtgacaagacggccaagatgtgggacctaaacagcaaccaagcc
atgcagatcgcacagcacgaaggttcaattaagtcaatccactggataaaagcccccaac
tacagctgtatcatgactggcagctgggataaaacgctgaagttctgggacacccgctct
cccaatccaatgatgtccctccagatgcctgagagatgctactgtgcagatgttgtgtac
cctatggcagtggtagcaacagctgagagaggacttatagtttaccagctggagaaccag
ccctctgagttccgcagaatagactcccctctcaaacatcagcaccgctgcgtcgctata
ttcaaggacaagcagaacaagcccacagggtttgcacttggaagcatcgagggccgagtg
gcgattcactatatcaatcctcccaacccagccaaagataacttcaccttcaagtgccac
aggtccaacggaaccaacacgacaacgccacaggacatttatgctgtcaacgccatctcc
ttccatcctgtccatggcactctggctaccgtgggctcagacggacgcttcagcttctgg
gacaaggacgctcgcaccaagttgaagacctcggaacaactggaccagcccatcacagct
tgctgcttcaaccacaacggcaacatctttgcttatgcatctagttacgactggtccaag
ggccacgagtactacaacccgcagaagaagaactacatcttcctgaggaacgcagcagag
gagctgaagccacgaaacaagaaatggtga
DBGET
integrated database retrieval system
