Nothobranchius furzeri (turquoise killifish): 107385311
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Entry
107385311 CDS
T05163
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04510
Focal adhesion
nfu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107385311
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107385311
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107385311
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107385311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
107385311
NCBI-ProteinID:
XP_015814600
UniProt:
A0A1A8B329
LinkDB
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Position
sgr10:30855781..30913469
Genome browser
AA seq
1489 aa
AA seq
DB search
MFSFMDSRTLLLLAATQVCLLAVVRCQDYDQEDAFSCQQDGQRFNDKDIWKPEPCRICVC
DTGTVLCDEIVCEELKDCPKPEIPFGECCPICVADQPTSSGPGAKGQKGEPGDITDVVGP
RGPAGPMGPPGEQGPRGSRGEKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGGN
FAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGSTGSPGPQGFQGSPGEAGEPGQAGP
MGPRGPSGPPGKPGEDGEAGKPGKPGERGPSGPQGARGFPGTPGLPGIKGHRGYPGLDGM
KGETGAVGSKGESGAPGESGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPPGP
VGTAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIPGA
KGSSGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGFPGFKGEAGPKGEIGPVGL
QGAPGPQGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGTSGA
GGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGARGQ
PGVMGFPGPKGATGEPGKSGDKGLAGAPGLRGLPGKDGETGSAGPPGPAGTAGERGEQGQ
PGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGPAGATGPRGERGFPGERGAAGPQGLQGP
RGLPGTPGTDGPKGAIGPAGSGGAQGPPGLQGMPGERGSAGIPGPKGDRGDVGEKGPEGA
SGKDGSRGLTGPIGPPGPSGPNGEKGESGPAGPSGAAGVRGAPGDRGETGPPGPAGFAGP
PGADGQPGTKGEQGESGQKGDAGSPGPQGPSGAPGPAGPTGVSGPKGARGAQGPSGATGF
PGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGPPGEKGD
AGEDGPPGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSSGGAGDRGP
PGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSPGIKGDRGNTGPAGAPGAPGAPGSPGP
VGPTGKQGDRGEPGAQGPAGSPGPAGARGMPGPQGPRGDKGEAGESGERGQKGHRGFTGL
QGLPGPPGQSGDQGATGPAGPAGQRGPPGPVGPAGKDGSNGMPGPIGPPGPRGRSGETGP
SGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQAAGNLRQHDAEVDAT
LKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCNME
TGESCISPKPSKIPRKNWWSSKSKDRKHIWFGETMNGGFHFGYGDDSLAPNTAAIQMTFL
RLLSTEASQNLTYHCKNSIAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMEDGC
TRHTGHWGKTVIEYRSQKTSRLPLVDIAPMDIGGADQEFGVDVGPVCFL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactctactgctacttgcagcaactcaagtttgtcta
ttagccgttgtgagatgccaggattatgaccaagaggatgcttttagctgtcaacaagat
ggacagcgttttaatgacaaggacatttggaaaccagagccttgtcgcatctgtgtgtgt
gacactggaacagtcctgtgtgatgaaattgtctgcgaggagctaaaagactgccccaaa
cctgagatcccatttggagagtgttgccccatctgcgttgctgaccagcccacatcttct
ggaccaggagctaagggtcagaaaggtgaacctggagacattacagatgttgtaggacca
agaggaccagctggcccaatgggcccacctggagagcaaggaccccgcggatcaagagga
gagaaaggagagaagggaagccctggtcctcgcggcagagatggtgaacctggcacccct
ggaaaccccggaccccctggacctcctggacctaacggaccccctggccttggtggaaac
tttgctgctcagatggcgggcggtttcgatgagaaggctggcggcgctcagatgggcgtg
atgcaaggaccaatgggccctatgggacccagaggaccacctggctccaccggatcacct
ggcccacaaggtttccaaggcagcccaggcgaggctggagaacccggacaagccggcccc
atgggtccccgcggcccctcaggacctcccggaaaacctggagaggacggtgaagctggt
aaaccaggtaaacctggtgaacgaggaccttcaggacctcagggagcgcgtggattccca
ggaactcctggtctgcctggaatcaaggggcacagaggttatccaggtctcgatggtatg
aagggagagaccggtgctgtcggctctaagggagagtctggtgctccaggagagagcggt
gcacctggaccaatgggacctcgtggtttacctggtgagagaggacgtcctggaccctct
ggagttgctggcgctcgtggaaacgatggcttgcctggacctgctggtcctcctggtcca
gttggtacagctggagctcctggcttccctggctctcctggttcaaagggggaagctggg
ccgactggtgctcgtggaccggagggagctcagggaccccgtggagagtctggtactcca
ggatcacctggaccatctggagcttctggtaaccctggcactgatggaatccctggagct
aaaggctcatctggtgctccaggtatcgctggtgctcctggttttcctggacctcgtggg
cctcctgggccccagggagcaactggacctctcgggcccaaaggaacatctggagatcca
ggattccctgggtttaaaggagaggctgggcccaaaggagaaattggaccagttggactt
cagggtgctccgggtccacaaggagaggaaggcaagagaggccccagaggagagcctggt
gctgctggaccactgggacctcctggagaaagaggagctcctggaaaccgtggtttccct
ggtcaagatggtctggctggtcccaagggggctcctggagaacgtggaacctctggagcc
ggcggccccaagggtgccactggtgacccaggccgtcctggagagcccggtcttcctgga
gccaggggcctaactggtcgtcccggtgatgctggacctcaaggcaaagttggaccctct
ggagctgccggtgaggatggacgtccaggacccccgggccctcagggagcccgtggacag
cctggtgtcatgggattccccggacccaagggagcaaccggtgaaccaggcaagtctggg
gacaaaggactggctggagctcctggtctgagagggctgcctggaaaagatggagagact
ggctctgctggacctcctggccccgccggcactgctggggagagaggagagcaaggacag
cctggtccttcaggcttccagggtcttcctggacctcctggccctcccggagagggaggc
aaacctggagaccagggtgttcctggagaggggggacccgctggtgccaccggacccaga
ggtgagcgaggtttccccggagagagaggagctgctggccctcagggtctgcagggaccc
agaggcctgcctggaactcctggaactgacggacccaaaggagccattggacctgctgga
agtgggggtgctcaggggcctccaggtctgcagggtatgcccggagagagaggaagtgct
ggcattccgggacccaaaggagacagaggtgatgttggagagaaaggaccagaaggtgct
tctggcaaagatggttccagaggtctcactggtcccattggtcctcctggtccttctggt
cctaatggtgagaagggtgaatctggacctgctggaccttctggagctgctggtgtccgt
ggtgctcctggtgacaggggtgagactggacctcctggacctgctggcttcgctggacca
ccaggtgctgatgggcaacctggaaccaaaggagagcagggagaatctggacaaaaagga
gatgccggttcccccggaccccaaggaccatctggtgctccaggacctgcaggtcctaca
ggagtctctggacctaaaggtgctcgtggtgctcagggaccttctggtgcgactggtttc
cctggtgctgcgggtcgagttggacctcctggtccaaatggtaatcctgggcctgctggt
ccagcggggcctcctggtaaagatggacccaagggtgtgagaggagatggtggacctcca
ggcaggcaaggtgatgctggacttcgtggtcctgcaggacctccaggagagaaaggagat
gctggagaagatggtcctcctggtcctcttggtccatcaggtcctcaggggttggctggt
cagcgcggtatcgttggtttgcccggacagagaggtgaaagaggtttccctggtctgcct
ggaccttctggggagcctggaaagcagggaagttctggtggtgcaggtgaccgcggacct
cctggacctgtcggaccacctggactcactggacctgcaggagaacctggcagagagggc
aaccctggatctgatgggcctcccggtagagacggttctcctggaatcaagggcgaccgt
ggcaacacaggtcctgcaggtgctcctggtgctccaggtgctcctggttctccgggccca
gtgggtcctaccggcaaacagggagacagaggagagcctggtgcacaaggacctgctgga
tctccgggacctgctggagcccgaggaatgcctggaccccaaggaccccgtggagacaag
ggagaggctggggagtctggggagagaggacagaagggacacagaggcttcactggtttg
cagggtctccctggccccccgggtcaatctggagaccagggtgctactggacctgctggg
cctgctggacaaagaggaccacctggacctgttggccctgcaggaaaggatggttcaaac
ggtatgccaggacccatcggtcctccaggacctcgtggtcgctctggagaaactggacca
tctggtcctcctggaaaccccggaccccctggtcctcccggtccccccggtcccggtatt
gacatgtcagcctttgccggtctgggccagaccgagaagtcccccgatcctctcaggtat
atgagagctgaccaggccgccggaaacctccgccagcatgacgctgaggtcgatgccacg
ctgaaatctctcaacaaccagattgagaacattcgcagcccagagggatccaagaagaat
cctgctcgcacctgcagagatctgaagctctgccatccagactggaagagcggtgagtac
tggattgatcccaatcagggctgcaccgtagatgcaatcaaggtcttctgcaacatggag
acaggagagtcctgcatctcccccaagccatcaaagatccctcgcaagaactggtggtcc
agcaagagcaaagaccgcaaacacatctggtttggggagacgatgaatggaggattccac
tttggctacggtgatgacagcctggcgcccaacactgctgccattcagatgactttcctg
agacttctgtccaccgaggcttctcagaacctcacctaccactgcaagaacagcattgcc
tacatggacgcctcgacgggcaacctgaagaaggccgtgctgctccagggctctaatgat
gtggagatcagagctgagggcaacagccgcttcacttatagcgtcatggaagatggctgc
acgagacacacaggacactggggcaagacggtaatcgaatacaggtcacagaagacctct
cgtttgccccttgtggacattgcccccatggatattggtggagcggaccaggagtttgga
gtcgacgtcggaccagtttgcttcttgtaa
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integrated database retrieval system
