Nothobranchius furzeri (turquoise killifish): 107385417
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Entry
107385417 CDS
T05163
Name
(RefSeq) collagen alpha-1(VII) chain-like isoform X1
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
fn3
VWA_2
Kunitz_BPTI
DUF4992
Copine
Motif
Other DBs
NCBI-GeneID:
107385417
NCBI-ProteinID:
XP_015814752
UniProt:
A0A1A7ZDQ8
LinkDB
All DBs
Position
sgr01:80354329..80444729
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AA seq
3032 aa
AA seq
DB search
MGHSFVWMFLLCLTLSHRNVAAQAEACRTVVQADIVFLVDESWSMGHTSFSRVKGFLSAI
ISSFQDSVLGPEGVRFGVTVFGDVPRMRVALTDYSSLEEVLRAVRDLPYEGGSRRTGSAL
QFLVDSVFSPAISRDFTPKIAVLITNGRSDDQIDPAARAVADNGITLFAVGVWGADESEL
RRIVSEPHEEYLLPSVDFSLLETILPKLSRRLCFSASEPPRPVKVPQPSVEPVVGPRDLQ
VSELAHSSLRLTWSQATGDVTGYRLLITPLSPKGYLLSTQQRQLDLKADVSTAIVMELSP
NTDYSLTLYAVYPKLLGSSAMVTVKTTSLPKVSNFRVIEEGLFSLRLGWTPPVGKLVGFK
IFIPRSNRPGFTYEHLLSGDVSSHVIDSLEEDKKYTISIYAIYPQGPSEPISLVGKTLKL
VPVKQFLVQNATTDTVQARWASVKGATGYRLTWASADGHIENVNLDDSFNFYMIQGLHAG
SEYTVTINPIFGDIEGPVTTTDVKTLESSAVQTLKVSAVSTSTAVVSWNSVPGATGYRLA
WGPTPEFAGRDRPRQLALNGSTTEYQLKNVAHDTEYVLTLYVLFGSVVGPGFPATFRTSP
LGYVSNFKVISYTSTAIDVEWSSIVGATEYKLSWKTDDGTPQFHYLDRNVLSYKIKDLNP
QSIYTITICAVYGNSEGPEISLSQLTAAVSDSEPIQAVREVKVLDIGVNSITLSWRKTPG
VSGYKISWIPFLWGDEKSQVASAASTTFTISNLRESTAYKIQVSPLVGSREGSPVLVTAR
TLDLPKVEGFAALNTTDSSTILNWTPVAGVSGYLLSWRHISVLETKTETLGPGFFSYKIR
DLQYGRTYIFTIRPLYGEVEGPISTIYQRILGQDNPVKSAQSVPTTVIPNSLYTMTDSQT
TSITISTTVAQSSTTTTEPPTAAPPTKPPTTKKPPPQPSATKAKPDPITALKPATVSTKS
TAPPRPVCGRAKADIVFLLDESSSIGVNNFIKMKDFIFRVATYFPVISPQGTQIAVVHYS
DEPRIEFRLSDFKDRNSLLRAIRGLPYRGGNTKTGKGISYVLQEVFQESLGMRQDVAHVL
VLITDGRAQDDVLPPSIVARVFGVSVLTVGVSNADIEELNKIAASASYKNVFYSPTFDDF
PSIEREFISSICSEELLSEFKLQDEFAQLDTPTEDPEEMQKPQGPCSSRCEKGQKGERGD
GFGLGGLKFRPSPGQFDPFTSSKGERGEKGPPGTDGVPGLPGRPGRTGPPGSPGQRGFPG
IPGDMGIPGPTGPKGQRGERGEPGYVIAGTDSNYVPGRKGEPGSSGPQGPAGVPGVNGSP
GLPGQPGPPGAPGLSVKGETGELGAKGLRGKQGMKGDKGESGKDGAAGLPGPIGVDGIPG
VPGQKGQKGEEGVGKQGIQGPHGEKGEKGNVGLTGAVSPKGDRGDQGIQGVVGPRGKKGV
KGERGDKGDQGEMGPAGPQGPQGRTGPMGLKGDEGPRGVPGDPAKGILGPPGKKGARGDV
GPVGSTGLQGIKGDQGDKGEKGSPGFGIPGQPGPKGENGERGNVGLSGKPGPKGKDGSKG
ENGSIGLPGNPGDPGLRGKDGAPGVKGEQGMKGEAGPPGEPGERGMRGSTGLPGRLGDTG
EKGDAGKPGQPGTDGVKGDKGEAGKPGPPGTQIVSDNNILTRVIKGEQGEPGQPGLRGET
GEPGPRGPEGKPGLPGPSQSSSGLDGIPGKPGMKGDKGQKGERGEKGDQGGVGIAGIPGL
PGTPGRSGVDGKRGLPGKDGDRGIKGDDGKKGDKGDPGANGTDGSKGEPGPPGLPGKQVL
VTSEGATSDDIRQAFPIPMGPPGATGSPGVKGEKGEIGLKGEKGDAGAPGKSLEMKHIEM
MFEDYGIRLPLLKALIDRLLQDGVEELLHVLSSSKKTKENTETSNVITEFTRSLKFDLPN
QPPSELDVQDPDVEEQLPETLSTNLLNGTSEGPTSWTIATLENEQKLNQIETKLEGSRGT
EIDDWNSNVSSLKMNLTFINSTVNYPTDKEPVLGLPETVVETVVLSQEEPLKKIAAPKKK
NRERGKGKGNKGRRKRQKQRLTSEEKKGGEEEEEFYNGEEYAYEYEEELSTDELSVSHEE
TKNGEEEHSPTPHSNQFETSSSPESSDRDTDAQVIMTTPAPPSRSTGGAFEDQVVLPTPP
PATDEPDQIPQPQIRVKRSTSWPVSLVFMPGAPGGRNWFKKAQNNQSPGARGYSSWSNIN
HKNSQTSSERKWQEREDKLLSSDATIETQTDGGEEEGEMEKAKEEVVPGGYLETNPDAVR
EEEEETSGDYDWEMEEDVDREREEEENELEVRREKERLEMEREREELEKEKEANLEMEKE
NTERVEDTEVEKTEEEVERDLEREEWERRREKMEREREGSHSEETEQPYPYPPEYFFLKG
QPGENGNPGQKGEIGEKGQKGEPGIGHRGPEGQAGPPGQKGEPGQPGPPGAQGIQGIHGN
PGIQGSPGLRGPPGDTGEPGREGERGKKGKNGSSGSPGSQGSPGPDGLPGVPGVKGEKGD
SIPGQPGARGVPGPPGRQGEKGTPGVKGAPGLIGPKGLRGGKGEKGDRGTPGVRGERGSE
LNIQGPRGFKGTKGEAGERGLPGFDGDKGEKGEDGPPGVKGVKGDAGTKGAMGRFGARGP
VGQKGDPGEPGLNGVMGRDGEHGKDGATGDKGDVGLQGLKGDQGDAGEHGLPGENGEKGE
KGSRGFPGRVGSSGLSGEKGDAGLPGSPGIPGLNGLTGRKGEKGEGGTNGVNGEPGEKGE
KGTAGFPGFPGFKGSTGGPGRDGDEGPPGPPGPNGDPGPKGERGRKGRSKPCQRGSPGTP
GRRGESGEVGIEGVKGDKGEPGLSAEEVKELVTQEVVEKCGLEYKFMVKSVDPDATAAMT
DVKLIHKLENIAVSISNDLHEKTMEEEELEDKHRAHAEAVKIMDAKISPNHNESRETRTV
GWTQRTKRRVFRTKNVAAERCSEPMLEGSCSDYVLLWYFHVQSGECKPFVYGGCGGNQNQ
FTSKLECQSRCGLGRNSTGGPSDHMRDGPANS
NT seq
9099 nt
NT seq
+upstream
nt +downstream
nt
atgggccactcttttgtctggatgtttctgctgtgcctcacactctctcatcgaaacgtt
gcagcacaagctgaagcttgcaggacggtggtgcaggcagacatagtgtttctggtggat
gagtcatggagcatgggtcataccagcttctccagagtcaaaggcttcctctcagccatc
atctcctcctttcaggacagtgtgctcggacctgagggggttcgcttcggagtcaccgtc
ttcggggatgttcctaggatgcgagttgctttgacagattacagttcactggaggaggtg
ctcagagctgtcagagacctcccctacgaaggtggatccaggaggacaggcagcgccctc
cagttccttgttgattctgtcttcagccctgccatcagccgagatttcaccccaaagatt
gcagttctgatcacaaatggccgatcagatgaccagatcgatcctgcagccagagcagta
gccgacaacggaattacactgtttgcagtaggtgtttggggagctgatgagtcagaactg
aggaggattgtgtccgaaccccatgaggagtatctgctgccaagtgttgacttctctctc
ttggagaccatccttcccaaactgtcccgcagattgtgttttagtgcctctgaaccaccg
cggcctgttaaagtcccccagcctagtgtggagccagtggtgggtcctagagacctgcaa
gtgagcgagctggcccacagctccctcaggctcacatggagccaggctacaggggacgtt
acaggatatcgcctcctgattacacccctcagccccaaaggatatctcctctccacgcag
cagagacagctggatttgaaggcggatgtcagcacagccattgtgatggagctgagtcct
aacacagactactctctcaccctctacgccgtctatcccaaacttttggggagctctgca
atggtcacagtaaagacaacttctttgcccaaagtgtcaaacttccgtgtaattgaggag
ggtctgttctcgttgcgtcttggttggacgcctcctgtagggaagctggttggattcaag
atcttcatccccagatctaacagaccaggatttacttatgagcatctgctctctggagac
gtgtcttctcatgtgattgacagcctggaagaggataaaaagtacaccatcagtatttat
gccatttaccctcaaggaccaagtgaaccaatatcattagtaggcaaaacattaaagtta
gtaccagttaagcagttcctggtgcagaatgcaacaacagacaccgtccaagcaaggtgg
gcatcagtcaagggagccacaggataccgtctgacatgggcatccgcagatggccacatt
gagaacgtaaacctcgacgactccttcaacttctacatgattcagggtctccatgctggc
tccgagtacaccgtcactatcaaccccatctttggagacatcgaggggcccgtcaccacc
actgacgtgaagacattggaaagcagtgcagtgcagactctgaaggtatctgctgtaagc
acaagtacagctgtcgtctcctggaacagtgtcccaggggccacagggtacaggctggca
tggggccccacaccagagtttgcaggtcgagatcgtcccagacagttggctctgaacggc
agcaccacagagtaccagctgaagaatgtagcccatgatacagagtacgttctgacgctc
tatgtgctctttggatctgtggtcgggccgggtttccccgctacctttagaacctctcct
ttggggtatgtgtccaacttcaaggtgatatcctacaccagcactgctatagatgttgag
tggagttctattgttggagctacggagtacaaactctcttggaaaacagatgacggtaca
ccccagtttcattatctggaccgcaatgtcctgtcatacaagattaaagacctgaaccca
cagtccatttacaccatcactatttgtgcagtctacggcaactcagagggacctgaaatc
tccttgtctcagctaacagctgcagtctcagactctgagcccatccaggcagtgagggag
gtgaaggtcctggacatcggggtaaactccatcaccctgtcttggaggaaaacaccggga
gtttcagggtataaaatctcctggattcccttcctctggggtgatgagaagtcccaagtg
gcttctgctgcctctaccaccttcaccatctccaacctgcgggagagcacagcttataag
atccaggtttcaccacttgttggtagcagagagggaagcccagtcctggttactgcacgc
accttggatcttcctaaagtggaaggatttgctgctctgaacacgacggacagcagcacc
attctgaactggacacctgtggcaggtgtttctggataccttctctcctggaggcacatc
tcagtactggagacaaaaaccgagaccctgggccctggattcttctcatataagatcaga
gacctccagtatggcagaacatacattttcactatcagacctttgtatggagaagttgag
gggcctataagcaccatataccagaggatattgggacaggataatcctgtgaaaagtgcc
cagtctgttccgactacagtgatcccaaactccttgtacaccatgacggactcccaaacc
acctccatcaccatcagcactactgttgctcagtcttccaccacgacaaccgagcccccc
acagctgcaccaccaactaaaccaccaacaaccaagaaaccaccacctcaacccagtgcc
accaaagctaaaccagatccgatcactgcgctgaaaccagccacagttagcacaaagtcc
acggctccaccaagaccagtgtgtgggagggccaaagcagacatagtattcttactggat
gagtcctcgagcattggtgttaacaacttcatcaagatgaaggactttatattccgagtg
gccacttacttccctgtgattagtccacagggcacacagatagccgtggttcattacagc
gatgagcctcgtattgaattccgtctaagtgacttcaaagacagaaactcactgctcagg
gcaatcagagggctgccgtatagaggaggcaacaccaaaacaggaaaagggatcagctat
gttctgcaggaagtgttccaggagtctttggggatgagacaagatgtggcccacgttctg
gttctgattacagatggaagggctcaggatgatgttttgccaccatctatagtggcacgt
gtctttggggtcagtgtacttacagtcggggtgtctaacgcagatatcgaggagctaaat
aaaattgctgcttccgccagctacaaaaacgtcttctactctcccacctttgatgatttc
ccctccatagaaagggagttcatcagcagcatctgtagcgaggagcttctgtctgagttt
aaattacaagatgagtttgctcaattagacacaccaactgaagacccagaggagatgcag
aaacctcagggtccctgctcttcacggtgtgagaagggtcaaaaaggagaaaggggagat
gggtttggtcttggaggtttgaaattcagaccaagtcctggacagtttgatcctttcacc
tcatctaaaggagaacgcggagagaagggacctcctggaacagatggtgtccctgggttg
ccagggagaccaggacgaacggggcccccgggttctcctggtcagcggggttttccaggc
attccaggtgacatgggtattcctggacccactggtccgaagggtcagagaggagagaga
ggagagcccgggtacgtcatagctggcacagactctaattatgttcctggacgaaaagga
gaacctggatcatcaggtccccagggaccagcaggtgtacctggtgtcaatggttctccg
ggcctgcctggacaacctggaccaccaggagcaccaggtttatctgtgaaaggagaaact
ggagagctgggagcaaaaggtttacgggggaagcagggcatgaaaggagacaaaggagag
tccgggaaagatggggctgcaggtctgcccggtcccatcggcgttgatgggataccagga
gtccccggtcagaaaggacagaagggagaagaaggagtcggtaaacagggaattcaaggt
cctcatggagagaagggagaaaagggaaatgttggcttaacaggagcagtcagtccaaag
ggtgaccgtggagaccagggtatccagggagttgttggacctcggggtaagaagggagtg
aagggagagcgaggggacaaaggagatcaaggagaaatgggccctgctggaccacaagga
cctcaaggacgaactggaccgatgggactgaaaggagatgaaggtccaagaggagtccct
ggagatcctgccaaggggatacttggtccacctggaaaaaagggtgccaggggagatgtc
ggtccagttggttccaccggccttcagggaataaaaggagaccaaggagacaagggagaa
aagggaagtcctggttttgggatcccaggacagccaggaccaaagggtgaaaatggcgag
aggggaaatgttggtttgtctggaaaaccaggaccaaaggggaaagatggatctaaaggt
gaaaatgggagcattgggttacctggaaatcctggagatccaggattaagaggtaaagat
ggagcacctggagtgaaaggagaacaaggaatgaagggtgaagcaggaccacctggagag
cctggggaaagaggaatgaggggttctacagggttaccagggcgactgggggatactgga
gaaaaaggagatgctgggaagcctggccagcctggtactgacggagtaaaaggcgataaa
ggagaggcggggaagcctggacctccaggaacacaaattgtatcagacaacaacatactg
accagagtgattaagggtgaacaaggagagcctggtcagcctggtttgagaggggaaaca
ggtgaacctggacctagaggtccagaagggaaacctggacttccaggaccatcacagagt
agttctggacttgatggcattccaggaaaaccaggaatgaagggcgacaaggggcaaaag
ggagagagaggagaaaagggagaccaaggtggggtagggatcgccggaatacctggttta
ccaggaacaccgggcagatctggcgttgatgggaagagaggtttgccgggaaaagatgga
gatcgtggaattaaaggagatgatggaaaaaagggggacaaaggagatccaggtgcaaat
ggtacagatggaagtaagggggaaccagggcctccgggtttgcctgggaagcaagtgctc
gtcacttcagagggtgcaacatctgatgatatccgacaagcctttccaatcccaatgggt
cccccgggggctaccggttcaccaggagtgaagggtgaaaaaggagaaattggcctcaaa
ggagagaagggtgacgctggagctcctggaaagtctcttgagatgaagcacattgaaatg
atgtttgaagactatggtataaggctgcctctgctgaaagctttgattgacaggctgctg
caggatggagtagaggaactgcttcacgtgctcagcagctcgaagaaaacaaaagagaac
acagaaacctccaacgtcattacggagttcacaagatcactgaagtttgatctccccaac
cagccaccatcagagttggacgttcaggaccccgacgtagaggagcagcttccagaaact
ttgtccactaatctgttaaatgggacctcagaaggtccaacctcgtggaccatcgccact
ctggagaacgaacagaagctcaatcagatcgaaaccaagttagaaggatccagagggaca
gagatcgatgactggaacagtaacgtgtcctctctcaaaatgaacctgacgttcattaat
tctaccgttaattatcctacagataaggagccggttttagggttacctgaaactgtggtg
gagacggttgtcctcagtcaggaagaaccgctgaagaagattgctgcaccaaagaagaag
aacagggagcgtgggaaaggcaaagggaataaaggacggcgtaagaggcagaaacaacgt
ctgacgagtgaagaaaagaaaggaggagaggaggaagaagagttttataacggtgaagaa
tacgcgtatgaatacgaggaggaactttccacagatgagctctccgtctctcacgaggag
acaaagaacggagaggaggagcattcacctactccccattctaaccagtttgaaacctcc
agttctcccgaatcctcagacagagacacagatgcacaggttatcatgacaactccagca
ccaccttctcgatccacaggtggtgcgtttgaggatcaggtggtgctgcccactcctcca
cctgcaacagatgagccagatcagattcctcagcctcaaatcagagtgaaaagaagcacg
tcctggcctgtctctttggtctttatgccaggtgccccaggtggacgaaactggtttaaa
aaagcacaaaacaatcagtctcctggtgctcgcggttacagtagctggagtaacatcaat
cataaaaacagtcaaacatcttctgagaggaagtggcaagaaagagaagacaaactgcta
tcgagtgatgcaaccatagagactcaaacagatggaggagaagaggagggagaaatggaa
aaagcgaaagaagaagttgtgcctggtggatatttagaaacaaaccccgatgcagtccgt
gaggaagaagaggagacaagtggagattacgactgggagatggaggaagatgttgatcgt
gagagggaagaagaggagaatgagttggaggttagaagagagaaagaaaggttggaaatg
gagagagaaagagaggagctggagaaagagaaggaggccaacctggagatggagaaagaa
aacacagagagggtggaagacacggaggtggagaagacagaggaggaggtggagagagac
ttagagagggaggaatgggagaggaggagggagaaaatggaaagagagcgagaagggagc
cacagtgaagaaactgaacagccttatccatatcctccagagtactttttcctgaagggg
cagcccggtgaaaatggaaaccccggacaaaagggtgaaattggtgaaaagggacaaaag
ggagagccaggcatcggtcacagaggtccagagggtcaagcaggtcctccaggacagaag
ggggaaccagggcagccaggacctccaggtgctcaaggcatccagggtatccatggtaat
ccaggcatccagggctcccctggtcttagaggacccccaggggacaccggagagccaggt
agagagggagagcgaggtaaaaaagggaagaatggatcatcgggatctccgggatctcaa
ggttcaccaggacctgatggtcttcctggagtacctggagttaaaggagaaaagggtgac
agtattccaggtcagcctggtgctaggggagtacctggccccccagggagacagggtgaa
aagggcactccgggtgttaaaggagctccaggtcttattggtccaaagggtctacgtggt
ggcaaaggggaaaagggggaccgaggcacacctggagtcagaggagaaaggggaagtgag
cttaatattcaaggaccccgtggtttcaaaggcaccaaaggagaggcgggtgagcgaggc
ctcccaggttttgatggtgataaaggagagaagggagaagatgggcctcctggagtcaag
ggtgtaaaaggagatgcgggcaccaaaggtgcgatgggaagatttggagcacgaggccca
gttggtcagaagggggatccaggagagccagggctcaatggagtgatggggcgcgatgga
gagcatggaaaagatggagccacaggggacaaaggagatgtgggacttcaaggcctgaag
ggagatcagggtgatgcaggagaacatggcttaccaggagagaacggggagaaaggagaa
aagggttctagaggtttcccgggacgtgttgggagttcaggtctaagtggagaaaaggga
gatgcaggtttacctggcagcccgggcataccaggactaaatggactgaccggacgcaag
ggtgaaaaaggagaaggaggaaccaacggtgtcaatggcgaaccaggagagaaaggagaa
aagggtacagcaggtttcccaggttttccaggattcaagggttcaacaggaggtccagga
agagatggagatgaaggtccaccaggaccaccaggtcctaatggggacccagggcccaag
ggggagagggggagaaaaggccgatcgaaaccatgtcagaggggatcaccgggaacgccg
ggacgacggggggagagtggtgaagtgggtattgaaggggtgaaaggggacaaaggagag
cctggactctcagcggaagaagtgaaggaactcgtcacccaggaagttgtagaaaagtgc
gggttggaatacaagttcatggtaaaatctgtggatccagatgcaacggctgcaatgact
gatgtaaaacttatccataagttggaaaacatagcagtgtctatctctaatgaccttcat
gagaaaacaatggaagaggaagagctagaggacaaacacagagctcatgcagaagctgta
aaaatcatggatgcaaagatctcaccaaaccataacgagtcccgtgagacaaggactgtg
ggatggacacagaggacgaagagaagggtattcagaacaaagaatgttgcagcggagcgc
tgttcggagccgatgctagagggatcctgttcagactacgtcttgctctggtacttccac
gtccagtcgggggaatgcaaaccatttgtgtacgggggctgtggaggcaaccagaaccag
ttcacctctaaactggagtgccagagtcggtgtgggttggggaggaactctactggaggt
ccgtcggatcacatgagggatggacccgccaacagctga
DBGET
integrated database retrieval system
