Nothobranchius furzeri (turquoise killifish): 107385861
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Entry
107385861 CDS
T05163
Symbol
hcfc1
Name
(RefSeq) host cell factor 1 isoform X1
KO
K14966
host cell factor 1
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03083
Polycomb repressive complex
nfu04980
Cobalamin transport and metabolism
nfu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
107385861 (hcfc1)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
107385861 (hcfc1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
107385861 (hcfc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
nfu01009
]
107385861 (hcfc1)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nfu03036
]
107385861 (hcfc1)
03029 Mitochondrial biogenesis [BR:
nfu03029
]
107385861 (hcfc1)
Protein phosphatases and associated proteins [BR:
nfu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107385861 (hcfc1)
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
107385861 (hcfc1)
HMT complexes
COMPASS/SET1 complex
107385861 (hcfc1)
MLL-HCF complex
107385861 (hcfc1)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
107385861 (hcfc1)
Mitochondrial biogenesis [BR:
nfu03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
107385861 (hcfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_KLHDC2_KLHL20_DRC7
Beta-prop_ATRN-LZTR1
Kelch_3
Kelch_5
Kelch_4
Kelch_1
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
107385861
NCBI-ProteinID:
XP_015815489
LinkDB
All DBs
Position
sgr10:55693204..55708412
Genome browser
AA seq
1713 aa
AA seq
DB search
MSAPGSAVTGTTASVLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDEL
HVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWE
WKKLKAKNPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELR
PGSSVVGWDIPITYGVLPPPRESHTAVVYTEKTTRKSRLIIYGGMSGCRLGDLWTLDIDT
LTWNKPSVGGTAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACL
NLDTMCWETVLMDTLEDNIPRARAGHCAVAINSRLYVWSGRDGYRKAWNNQVCCKDLWYL
ETERPHAPARVQLVRANTNSLEVSWGAVSTADTYLLQLQKYDIPATPAAASPATSATPSQ
PVNSPKSPVPAAAAPSAQSLPHTGNNQDSEIQTPHLLQHKVLMMCIVIAAVLKVAAQQSA
TGASVVTVRPSQPGKSPVTVTSLPPGVRMVVPTQTTQGSPIGSSPQMSGMAALAAAAAAT
QKIPPSSAGTVLNVPPGATILKTVAVSPGTTTVKVASPVMVSNPATRMLKTAAAQAGTAT
ASSPTTTRPIITVHKSGAVTVAQQAQVVTTVVGGVTKTITLVKSPLTMGGSGTLISNLGK
MMSVVQTKPVQTSAVTGQASTNPLTQIIQTKGPLPAGTILKLVTSADGKPTTIITTTQAG
GTGNKPTILNISGVSPTTTKQGTTIIKTIPMSAIMTQPGATGVTSSGGMKTPITILTTKV
MTTGTPGKIITAVPKLTTAAGQQGLTQVVLKGAPGQPGTILRTVPMSTVGGVRLVTPVTV
SSVKPTVTTLVVKGTTGVTTLGTVTGTVSTALAGGAADSSSASLVTPSTTLGTIATLSSQ
VINPTAITVSAAQTSLTSTSSLSSPTMTVQNQPTQVTLITTPSGVEAQPIQDLPVSILAS
PTSEQPSSTDAGAAGDGSGTVTLVCSNPPCETHETGTTNTATTSSATIGAGQVCSNPPCE
THETGTTNTATTASSNMGGVQQVCSNPPCETHVTGTTNTATQSSSTMNTGETGTVQSACS
NPPCETHETGTTNTATQSSSTMNAGETSTVQSVPPKPPCETHETGTTNTTSTATSNMGGD
QTSTASGLVQRVCSNPPCETHETGTTNTATTATCSMETGEGTAAQQTEEEAEGTSSPEVA
SSTAAAAPAATTQGRAITTVTQSTPVPGPSVPSISSITEGASAAASSTEEPMQTDEAASA
EAAPAEEAAAAMETQAEGEAAAATALNLPSELMSEGQGATLMVTGLSDEELAVTAAAEAA
AQAAATEEAQALAIQAVLQAAQQAVMNEGDAAGDGQQTTSIPIMLTQQELAALVQQQQQL
QEAQAAAQQASVDTSLPTEGLAPADSLNDPSVESNGHNEIAASVASVASILPRTAAETLA
PSSTFAPSGSVASPAKLQAAATLAEVANGIEGEKQAPQPTPAKPVVKKENQWFDVGIVKV
TNMVVTHFYVPADDSQGDDDSGVVPDYSQMKKMELQPGTAYKFRVAGINACGRGAFSEIS
AFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSNQTTEAKAST
PAQLAFMRVYCGPNPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQE
SGKDAASAKLAPKRPGASPDMKPAGLKKARTDQ
NT seq
5142 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccccaggctccgcagtgaccgggaccactgcgtcggttctgcagccgcgatgg
aaacgggtcctcgggtggtcaggtccggttccccgacccaggcatggacacagagctgtg
gcaataaaggagcttatggtcgtctttggtggtggcaacgaggggattgttgatgaatta
catgtgtacaacaccgcaacaaaccagtggtttatcccagcggttcgtggtgatattcct
cctggttgtgctgcatatggttttgtttgtgatggaactcggttgttggtgtttggtggg
atggtggagtatggaaagtatagcaatgatctctatgaactacaggccagcagatgggaa
tggaaaaaactgaaagcaaaaaatcccaaaaacggcccccctccttgtcctcgccttggc
cacagtttttcattggttggtaacaaatgctacttgtttggtggactggccaatgatagt
gaagacccaaaaaacaacattcccagatacctgaatgatctgtacacgcttgagcttcgt
ccaggttctagcgtggttggatgggatattccaatcacatatggagttctgcctcctccc
cgtgagagtcacaccgctgtggtgtacacagagaagaccaccaggaaatcccgtttgata
atctatggagggatgagtggatgtcgtcttggagatctgtggactctggatattgatacc
ctgacttggaacaaaccatcagtaggtggaacagcaccacttccacggagtcttcactct
gccaccacaatcacaaacaaaatgtatgtttttggaggatgggttcccttggtgatggat
gatgttaaagtagccacgcatgaaaaagagtggaaatgtacaaacacgctggcctgccta
aatctggacaccatgtgctgggagacggtgttgatggatactctggaagacaacataccc
agggcccgtgctggccactgcgctgtggccatcaactccaggctgtacgtgtggagtggt
cgcgacggttatcgtaaagcgtggaacaaccaggtctgttgtaaagacctttggtacctt
gaaacagagcggccacatgctccagccagagtacagctcgtccgtgccaacacaaactct
ctggaagtgagctggggggccgtttccaccgccgacacgtacttgctgcagctgcagaag
tatgacatcccagcaaccccagcagcagcctcaccagccacgagtgcaaccccatcacag
cctgttaactccccaaagagccctgtgcctgctgctgcagcaccttctgctcagagttta
ccacacacgggtaacaatcaggacagcgagatccaaactcctcacttacttcagcataaa
gtcttgatgatgtgtattgtgattgcagctgttttaaaggttgcagctcagcagtctgcc
actggtgcgtctgtcgtcacagttcgccccagccagccggggaaatcccccgtcaccgtg
acatcccttcctcccggtgttcgaatggtagtgcctacccaaaccacccaaggatcgccg
atcggtagcagccctcagatgagtggcatggcagctttggctgctgcagctgcagccaca
cagaagatcccgccctcatctgcaggaactgtcctcaatgttcctccaggtgccaccatt
ctgaagacggttgctgtttctccgggcactaccacagtcaaagtggcttctccagtaatg
gtcagtaacccagctacccggatgttgaagactgctgcagcccaggcgggcactgcgact
gcctcctctcccaccaccactagacccatcattactgtgcacaagtctggtgctgtcaca
gtagctcagcaggcccaggtggtcaccactgtggtgggaggagtcaccaaaaccatcact
ctggtcaagagtcccctcaccatgggtggcagtggcactctgatctccaaccttggcaag
atgatgtctgtggtgcaaaccaagccagtgcagacatcagctgtcacaggccaggcctcc
actaaccctctcacacagatcatacagaccaagggtcccctcccagctggcaccattctg
aagctggtgacttctgcagatggcaaacccacaacgatcatcaccacaacgcaggctggg
ggcaccggaaacaagcccactatcctcaacataagtggggtttctcctactactactaag
cagggcaccaccatcatcaagactatccccatgtcggccatcatgactcagccaggagcc
acaggtgtgacaagcagtggaggtatgaaaacacctataacaatccttaccacaaaggta
atgaccactggaactcctggtaaaatcatcacggcagtgcccaaactcaccactgcagct
gggcagcagggcctgacgcaggtggtgctaaagggtgctcctggacagcctggaactatt
ctgcgcacggtgcccatgagcacggtgggtggcgttcgtctggttactccagtaaccgtg
tcatctgttaaacccaccgtcaccactctggttgtcaagggaactactggagtcaccact
ttgggcacagtcactggcaccgtgtccaccgccttggctggaggcgctgccgacagttcc
agtgcctcactggtaacgcctagcaccacactgggaaccattgccacgctgtccagccag
gtgatcaacccaactgccatcactgtgtcagctgcccagaccagcctgacttctacttcc
tcgctctcctcgcccactatgacagtacagaaccagcccacccaggtcactctgatcaca
actcccagtggtgtggaggcccaacccattcaagacctccctgtttccattctggcttca
ccgacttctgagcaacccagctccaccgatgcaggagcagctggagatggctctgggact
gtcaccctggtctgctccaacccgccctgtgagacccacgagaccggaaccaccaacacc
gccaccacctcctctgccaccatcggagcgggacaggtgtgctccaacccgccctgtgag
acccacgagacagggacaacaaacacagccaccacagcctcgtcgaacatgggaggagtc
cagcaggtgtgctccaacccgccctgtgagacccacgtgacagggaccaccaacacagcc
acgcagtcttcatccaccatgaatacaggggagacgggcaccgtgcagagcgcttgctcc
aacccgccctgtgagacccacgagacagggaccaccaacacagccacgcagtcttcatcc
accatgaatgcaggggagacgagcaccgtgcagagcgttccccccaaaccgccctgtgaa
actcacgagacggggaccaccaacactacgtccacagccacctccaacatgggaggagat
cagaccagcacagcgtcaggcctggtccagagggtctgctccaacccaccctgtgaaaca
cacgagaccgggaccaccaacactgccaccactgctacgtgcagcatggagactggcgaa
ggaacagctgcccagcagacggaagaggaagcggaaggaaccagcagcccagaggtagct
tccagtactgcagcagctgctccagctgccaccacccaaggccgggccatcactactgtc
acccagtccacaccggtccccgggccctcagtaccttcgatttcatccatcacagaggga
gcgagcgctgctgctagctccacagaagaacccatgcaaactgatgaggctgcgtcagct
gaagcagcacctgcggaggaggcagctgcagcaatggagacacaagcagagggagaagca
gctgctgcgacagccttgaacctgccctcagagctgatgtctgagggtcagggagccacg
ctgatggtgacggggctgtcggatgaagagctggctgtgaccgctgcagccgaggccgcc
gctcaggcagcagccactgaggaggcccaggctctggccatccaggctgttcttcaagct
gcgcagcaggctgtcatgaatgaaggtgatgctgccggagacggtcagcagaccaccagc
atccccatcatgctgacccagcaggagcttgcagcgttggtccaacagcagcagcagctg
caggaggcccaggctgctgcccagcaggcctcggtggacaccagcctacctactgagggc
ctcgcaccagctgacagcctcaacgacccgtctgtggaaagcaacggacacaacgaaata
gcagcctccgttgcatccgtggcgtccatccttccacgcaccgctgctgaaactctggcg
ccttcaagtacatttgcaccatctggatcagtagcaagtccagctaagctgcaagcagca
gccacactggcagaggtcgccaacggcatcgaaggagagaaacaagcccctcagccgact
ccagcgaagcctgttgtgaagaaggagaaccagtggtttgatgttggaattgtgaaagtg
acaaatatggttgtgactcacttctatgtgccagcagatgattctcagggagatgatgac
tctggcgtcgtgcccgactacagtcagatgaagaaaatggagctgcagcctggcacagct
tacaaattccgtgttgcaggaattaacgcttgtggtcgtggagccttctctgagatttct
gctttcaagacttgcctacccgggtttccaggggcaccttgtgccatcaagatcagcaag
agtcccgatggagcccacctgacctgggagcccccgtctgtgacctcaggaaagattatt
gagtactctgtgtacctggctatccagagcaaccagacgaccgaggccaaggcctccacc
ccagctcagctagccttcatgagagtgtattgtggacccaacccgtcatgcttggtgcag
tcgtccagcctctccaacgctcacatcgactacaccacgaagccagctatcatcttccgc
atcgccgctcgcaacgagaagggttacggccctgccacccaagtccgatggctgcaggaa
tctggtaaagatgctgcatctgctaaacttgctcctaagagaccgggcgcctcacctgac
atgaaacctgctggtctaaagaaagcaaggacggaccagtga
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