Nothobranchius furzeri (turquoise killifish): 107386082
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Entry
107386082 CDS
T05163
Symbol
smarcb1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03082
ATP-dependent chromatin remodeling
nfu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107386082 (smarcb1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
107386082 (smarcb1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
nfu01009
]
107386082 (smarcb1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nfu03021
]
107386082 (smarcb1)
03036 Chromosome and associated proteins [BR:
nfu03036
]
107386082 (smarcb1)
Protein phosphatases and associated proteins [BR:
nfu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107386082 (smarcb1)
Transcription machinery [BR:
nfu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107386082 (smarcb1)
SWI/SNF complex
107386082 (smarcb1)
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
107386082 (smarcb1)
PBAF complex
107386082 (smarcb1)
SWI/SNF complex
107386082 (smarcb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
107386082
NCBI-ProteinID:
XP_015815749
UniProt:
A0A1A8VDP1
LinkDB
All DBs
Position
sgr11:complement(6717113..6724008)
Genome browser
AA seq
373 aa
AA seq
DB search
MALSKTFGQKPVKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRKLATVEERKKI
VESSHDHGYTQLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTTINRSRLGREKKRTFPLCFDDHDPAVIHENATQPEVLVPIRLD
MEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDS
ILEDQTDQRVIIKLNIHVGNISLVDQFEWDMSERENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgagcaaaacgtttggacaaaaaccggtgaaatttcagctcgaggaggatggg
gacttttacatgatcggttcagaggttggaaactaccttcgtatgtttagaggctccttg
tataaacgctacccatcgttatggagaaaactggcaacagtggaagagcgaaagaaaata
gtggagtcgtcacacgatcacggctacactcagctggccaccagcgtgacgctgctgaag
gcctcagaggtcgaagagattctggatggaaatgatgaaaagtacaaagctgtgtcgatc
agcactgagccccccgcctacctcagggaacagaaagccaagaggaatagtcagtgggtt
ccaacgctacctaacagttcccaccacctggatgcagtcccctgctccaccaccatcaac
cgcagccggctgggccgggaaaagaagaggaccttccctctgtgctttgatgaccacgat
ccagctgtgatccatgaaaatgccacccagcccgaagtccttgtcccgatccgcctggac
atggagatcgagggtcagaagctccgagatgctttcacttggaacatgaacgagaaactc
atgacgccagagatgtttgcggagatcttgtgtgacgacctggacctgaacccactggcg
ttcgttcctgccatcgcctcggccatccgacagcagatcgagtcatacccgacagacagc
atcctggaggaccaaacggaccagagggtgatcatcaagctgaacatccacgtggggaac
atctctctggtggaccagtttgagtgggacatgtcggagagggaaaactcgccggagaag
tttgctctgaagctgtgctcggagctcggcctgggcggagaatttgtcaccaccatcgcc
tacagcatccgaggtcagctgagctggcaccagaggacctacgccttcagtgagaacccg
ctgcccactgtggagattgccatcagaaacacaggtgatgctgaccagtggtgtcctctg
ctggagaccctgacagacgcagagatggagaagaagatcagagaccaggacagaaacacc
aggcgaatgaggcgtctggcgaacacggcaccagcgtggtag
DBGET
integrated database retrieval system
