Nothobranchius furzeri (turquoise killifish): 107386273
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Entry
107386273 CDS
T05163
Name
(RefSeq) collagen alpha-1(XXVII) chain B-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107386273
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107386273
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107386273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
107386273
NCBI-ProteinID:
XP_015816057
UniProt:
A0A9D2XPP9
LinkDB
All DBs
Position
sgr11:519910..626501
Genome browser
AA seq
1689 aa
AA seq
DB search
MEPDNAPHSKPKAAGVGGRTLLFWTILCFTCSLRLVHAQDVDVLQHLGLFGRRAAGSSPA
PPQPIPNGVIPFKSGIILTPRARVQVPLRTVLPASYHSTSFSLVLSLFAHRFNSAFLFSV
LSKRKRVQLGLQLVPGNVIVHVGHKSFVTFDYDVYDGRWHHFALDIRGRHVFLHTSCGKN
SLRAYLSSQKEAVLDPDGSFLLGKMNRHSVPFEGAICQFDIHPSAESAHNYCDFIKKHCR
EADTYRPVLSPMLPLFADPNITFARTSPSSLALTTESSRTTILPTDRPISPKTTSEYLNI
GTPKAGSGSVSPPDHPRSESPSKILTQTVTTSLRISVTTPNPKPNMHTWKNTRQRDANPS
KPSGKHERFPGSTRQSDLKPDFSTTAVPTHKSPSSTPPHPEKNPSPEALQKPEPKVTGSQ
DFTSTTPTTATPASADDSQTFDLEPTQFSLLAGSPGLKGDPGPPGPQGFPGLPGKAGRRG
SRGPPGPHGNPGPPGTPGMKGQKGDPGLSLCQAPKGAKGETGIGGSPGLPGQDGRKGLKG
YPGPAGLPGEQGRRGDEGSPGAKGYPGRQGLPGPVGRMGPKGIRGHIGIPGLFGLPGPDG
ERGIPGVHGKKGKLGRPGFPGDFGERGPPGPDGNPGELGAPGPGGVTGLIGDLGPVGVMG
SPGLPGLKGVAGSPGGAGLKGDEGDVGLPGEQGDRGFKGDKGSRGSPGLPGPRGKPGPQG
TPGEMGPGGIPGPPGSEGFPGDIGPPGQNGPEGPKGKQGLRGFPGPAGKPGPQGDEGPVG
PAGPIGPEGRPGRQGFSGPTGPDGPKGETGMAGEVGKLGEKGLPGFIGPGGEMGITGGKG
DRGKTGAPGPPGDPGPTGHAGIPGETGPPGPQGIPGPPGPRGSAGIRGPKGQRGPRGPDG
PIGEMGSTGVKGSDGPPGKLGLPGPMGNLGEPGAAGPKGFPGVQGLSGPPGSKGVAGEPG
PAGPAGRTGSMGAMGLMGPSGKSGEKGLPGEPGEKGFVGPPGTLGEQGLIGQRGETGMDG
EVGASGPHGAKGEKGDPGSEGDSGDRGKTGLKGKEGPPGPFGLVGVRGQEGKPGKTGEGG
KPGEKGGKGQQGHVGEPGSIGDQGGAGFVGQKGARGTVGMVGAPGKMGQGGDPGNAGYEG
HMGPLGTLGPPGPKGEKGNQGDDSKVEGPPGPQGDRGPSGDGGERGEPGDPGHIGETGLD
GPRGEIGAPGLPGHPGTKGQAGLKGFKGDQGPKGKSGATGASGAKGPPGPEGPSGPRGVL
GREGLEGLPGTDGLSGNDGSKGVKGEQGDDGEVGLPGKPGMQGERGVMGLPGDQGSLGLK
GERGMPGQTGPAGKRGSVGTMGFSGKQGDPGAKGQPGGGGPQGFPGVVGMFGPKGPPGDN
GPSGIQGPKGPRGLMSVEGAFGPGGIIGPSGHPGLQGDKGSRGEAGLQGPRGSPGPQGPP
GPPGLPSSAFLLQKREASGAASRVLVDPHAALKQENYQSMELPVLDQGTEILKTLQHLNI
LVQSLRNPLGTRENPVRVCRDLFNCEQRMQNGVYWIDPNLGCSSDSVEVTCNFTAGGQSC
LKPLTVSKLELGVGRIQMNFIHLLSTEAVQHIIIHCLNTPVWAAGPSELPSSTAVSFEAW
SGETIQPGDLLEPIIARDDCWIKDGRWRQTHFIFQSQDPHLLPIVDMRSLPSAEPGARFH
LEVGPVCFL
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atggagccggacaatgccccgcactccaaacccaaagctgcgggagtcggggggagaact
ttgcttttttggaccatattgtgtttcacctgctccctgaggctcgtacatgcacaagat
gtggacgtcctgcagcatcttgggctttttgggcggagggcagctgggtcatcgcccgca
cctcctcagcctattcctaatggagtcatccccttcaagtccggcattatcctgacccca
cgggcacgcgtccaggtgcccctgcgcacggttctccctgcatcctaccactccaccagc
ttctcactggttctcagcctgtttgctcatcgcttcaacagcgccttccttttctctgtt
ctgtctaagagaaagagggtgcagctcggactgcagctcgttccagggaacgtcatcgtt
cacgtcgggcacaagagctttgtaacttttgactatgacgtctacgatggccgatggcat
cattttgctttggatattcgaggccgtcatgtattcttgcacacatcctgtggtaagaac
agtctacgcgcatacctgtcttctcaaaaggaggcggtgttggatccagatggctcattc
ctgctgggcaaaatgaaccgccattcagtgccatttgaaggtgccatttgtcagtttgac
atccatccgtctgcagagtcggctcataactattgtgattttattaagaaacactgcaga
gaagcagacacctatcggcccgtactttctcccatgctacctctgtttgctgatccaaat
attacttttgctcgcacaagcccgtcatctttggccttgactacggaaagctccaggacc
acgattcttccaactgaccgcccaatatcaccgaaaacaacatctgagtatttgaatata
ggcactccgaaagctggttctggttctgtttctccaccagatcatccacgatcagaaagc
ccttccaagattttaacgcagactgttactacatctctcaggattagcgtgactacaccc
aatccaaaaccaaacatgcacacctggaagaacaccaggcagagggacgctaatccatca
aaaccttctgggaagcatgaacgttttcctggttctaccagacagtcagatctgaagcca
gactttagcaccacggctgttcccacacacaaatctccctcaagcacacccccccaccca
gaaaagaacccatccccggaagctctccagaaacccgagccaaaagtgaccggttcacag
gatttcacatctaccactcctactacggccactccagcttccgcagatgactcgcagaca
tttgacctggagccgacccagttttccctgctggctggatcacctggactaaagggagat
ccgggaccaccgggccctcaaggatttccaggcttgccaggaaaagcggggaggaggggc
tccaggggtcctcctggtccccatgggaatcccggacctcctggaactcctggaatgaag
ggacaaaaaggagatcctggtctatccctttgtcaagccccaaaaggagcaaaaggagaa
actggtatcgggggctctcctggactgcctggccaagatggacgaaagggactgaaagga
tatcctggtcctgctggtctcccaggtgaacagggccgacgtggagatgaaggaagcccc
ggggccaaaggctatcctggcaggcagggtttacctggaccagtaggacgaatggggcca
aaaggaattaggggtcacattggcatccctgggctttttggcttacctggtcctgatggg
gagagaggaattccaggcgtgcatgggaagaagggcaagctgggtaggccgggctttcct
ggtgactttggagagagaggacctcctggccccgatggcaaccctggtgagctgggagct
cctggcccgggtggagttactggccttattggcgacctgggccctgtcggtgtaatgggg
tcacccggacttccaggactcaagggagtagctggaagtccgggaggcgcaggactgaaa
ggtgatgagggggatgttgggttgccaggagaacagggggaccgtggatttaagggcgac
aagggcagtcggggctcacctgggttgccaggtcctcgtggaaaacctggacctcagggg
acacctggggaaatgggccctggtggtatacctggccctcctggttcagagggcttcccg
ggtgacattggcccaccaggacaaaatggcccagagggtccgaaggggaagcaagggcta
agaggttttcccggtcctgcaggaaaacctggacctcagggggatgagggaccagttgga
ccagcaggacccattggacccgagggcagacctgggaggcagggattctctggaccgacg
ggcccagatggacccaagggcgagacggggatggctggcgaggtcgggaagcttggcgag
aagggacttccgggttttatcgggcctggcggagagatggggatcactggaggaaagggt
gatcgaggaaaaacgggtgctcccggacctccgggcgatccagggccaacgggtcacgct
ggcatccctggagagaccggaccacctggaccgcaggggatcccgggccctcctggtcca
cgaggatctgcaggcattagagggcccaaaggtcagaggggtccaaggggtcctgatggt
ccaattggagagatggggtccacaggggtcaagggctctgatggaccaccaggaaaattg
ggccttcctgggccgatggggaatctcggagaaccaggtgcagctggaccaaaaggattt
ccaggtgttcaaggcctctcaggacctccaggatccaaaggagttgcaggagaacctgga
ccagcagggccagcaggaaggactgggtcaatgggggcgatggggttgatgggaccttct
ggtaaatctggagagaagggccttcccggtgaacctggagagaagggtttcgttggtcca
cctggaacccttggggagcagggtttgattggccagagaggtgagactggaatggatgga
gaggttggtgcaagtggacctcatggagcaaagggcgagaagggcgatccaggctcagag
ggcgactcaggagacagaggtaaaactggcttgaaaggaaaggaaggcccacctggtcct
tttggacttgtgggggtgaggggtcaggagggcaaacctggcaaaactggggaaggagga
aagccaggggaaaaggggggcaaaggtcaacaaggccacgtgggtgagcctgggtcaatc
ggcgatcagggaggagcgggatttgttggacagaaaggagcgagaggaaccgttggaatg
gtgggcgctccggggaaaatgggccaaggaggcgatccgggcaacgcgggttacgaaggc
cacatgggaccactgggcacacttggacctcctggaccaaaaggtgaaaagggtaaccag
ggagatgacagcaaagtagagggccccccaggtccccaaggtgacagaggtccttctgga
gacggaggagagagaggagagccaggtgacccaggacacattggtgaaacaggtctagat
ggacctagaggtgaaattggtgctccaggtcttcctggacatcctgggaccaaaggacaa
gctggtctcaaaggattcaaaggggatcaaggtccaaaaggaaaatcaggggcaacaggt
gcatctggggccaaaggaccaccaggtccagaaggcccctcgggtccacgcggggtcctg
ggtagggagggactggagggtcttcctggaacggatggtttatcaggaaacgatggaagc
aaaggagtcaaaggggagcaaggagatgacggagaggtgggtttacctggaaaacctggg
atgcaaggagaaaggggtgtgatgggacttccaggagatcaaggctctctcggtctcaag
ggagagagaggtatgccaggccaaactggtcccgctggaaagagaggctctgttggcaca
atgggattttcaggaaaacaaggagatccgggagctaaaggacaaccagggggtgggggg
ccacagggctttccaggggtggtgggaatgtttggaccaaagggtcccccaggagacaac
ggcccatcagggatacaaggaccaaaaggacctcgaggactgatgagtgtggagggagcg
tttggccccggtggcatcatcgggcccagcggtcatccaggactccagggtgacaaagga
agtcggggggaggcgggattgcaagggccaagaggatctcctggtccccaaggaccacct
ggcccaccgggccttcccagctctgcctttctactgcagaaaagggaagcttctggggct
gcttcccgagtccttgtggatccgcacgccgctttgaagcaagagaattatcagagcatg
gaactgcccgtgttagaccagggcacagagatcttgaagactctacaacatctcaacata
ctggtccaaagtctgaggaaccccctggggacccgagaaaatcccgtccgggtctgccgg
gacctgttcaactgtgagcagcgaatgcagaatggcgtctactggatagatccaaacctc
ggctgcagctcagacagcgtggaggtgacgtgtaacttcactgctggaggacagtcttgc
cttaaacctcttacagtttccaagttggagttgggagtcggacgcatccagatgaacttc
atccacctattaagcaccgaggctgtccagcacatcatcattcactgcctgaacacacct
gtgtgggcagcaggaccctctgagctgccttcgtctacggctgtgagcttcgaggcctgg
tcaggggagacgatccagcctggagacctgctggagccaatcatagccagggacgactgc
tggatcaaagatggacgctggcgtcagacccacttcatcttccagagccaggacccacat
ttgcttccgatagtggacatgcgcagcttgccgtctgcagaacctggcgcacggtttcac
ctggaggtcggaccggtctgctttctgtga
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integrated database retrieval system
