Nothobranchius furzeri (turquoise killifish): 107386684
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Entry
107386684 CDS
T05163
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04137
Mitophagy - animal
nfu04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
107386684 (rabgef1)
04137 Mitophagy - animal
107386684 (rabgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nfu04131
]
107386684 (rabgef1)
Membrane trafficking [BR:
nfu04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
107386684 (rabgef1)
Protein recycling
Other Rab GTPase associated proteins
107386684 (rabgef1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
RecG_N
CID_GANP
EST1
Motif
Other DBs
NCBI-GeneID:
107386684
NCBI-ProteinID:
XP_015816719
UniProt:
A0A8C6LYX0
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All DBs
Position
sgr11:23108936..23115417
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AA seq
504 aa
AA seq
DB search
MSQRTERRGIHVDQSDLLCKKGCGYYGNAAWQGLCSKCWREEYQRVRQKQIQDDWALAEK
LQREEEAAAYASSHSAHSQSTAAQHASVGHFSKFEEKKTNEKTRKVTTVKKFFSPSSRTT
SKKEIQEVKAPSPSISRHASFDTDQVSKEFVDFLKNLHKPGRETYKQCRAFLLNMSSKKD
LGADELSECVQDFYQNLADRLISHFKGSSESVEQVMDQVEKYIMTRLYKSVFCPETTDDE
KKDLATQDRIRALHWVTIQMLCVSMEEDIPEVSENVVKAITDIIEMDSKRVPRDKLACIT
RCSKHIFSAIRITKNEPASADDFLPALIYIVLKANPPRLQSNIQYITRFCNPSRLMTGED
GYYFTNLCCAVAFIEKLNAQSLNLSPEEFERFMSGQTSPQFSSSDSDWPCSESGLGTTVT
NPVLVQLNHNLELLTGLCTRQEAVMEAAQSLQADLLTWSDSVQQEVHNILEKYPLEIISK
VSAIDANTDNDNLPSPIKPQVFAD
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcggaccgagcgacggggcatccatgtggaccaatcagacctactctgcaaa
aagggatgtggttactatggaaacgcagcatggcagggcctgtgctcaaagtgctggaga
gaggagtaccagcgggtgcggcagaagcagatccaggatgactgggccttggcagagaag
ttgcagcgagaggaagaggcagcagcgtacgccagcagtcacagtgcgcattcccaatct
actgcggcgcagcacgcttctgtcggccacttctccaagttcgaggaaaagaaaaccaac
gagaagacgcgcaaagtgaccacagttaagaagttctttagcccttcatcgcgaactacc
tctaaaaaagaaatccaggaagttaaagcaccaagtccgtctattagccgtcatgctagc
tttgataccgatcaagtgtcgaaagagtttgtggacttcttgaagaacctccacaagccc
ggccgggagacctacaagcagtgcagagctttcctcttgaacatgtcgagtaagaaggac
ctgggcgctgatgagctgtctgagtgtgttcaggacttctaccagaacttggccgaccgc
ctgataagccacttcaaaggctcttcagaatcggtggagcaggtgatggaccaagtggaa
aagtacatcatgacgcgtctgtataagagcgttttctgtccagagacaaccgatgatgag
aagaaggacttggcaacacaggacaggataagggctttgcactgggtcaccatccagatg
ctctgtgtgtccatggaagaagacatccctgaagtctctgagaatgtggtcaaagcaata
acagacatcattgagatggactccaagagagttcctcgggacaagcttgcttgcatcacc
cgctgcagcaaacacatcttcagcgccattaggatcaccaagaatgagccggcatccgcc
gatgatttcctccctgcactcatttacatcgtcctcaaagccaaccctccgcggctccag
tccaacattcagtacatcaccaggttctgtaaccccagcaggctaatgactggagaggat
ggatactacttcacaaatctgtgctgtgcagtggccttcattgagaagctcaacgctcag
tctcttaacctctccccggaggagtttgagcgcttcatgtccggtcaaacttcgccgcaa
ttcagcagctcagacagcgactggccctgctccgagtcggggctcggcaccactgtcacc
aaccccgtcctggtccaactcaatcacaacctggagctgctgacgggactctgcacccgc
caggaggccgtgatggaggccgctcaaagcctccaggccgatctcctcacctggtcggac
agtgtgcagcaggaggtgcacaacatattagagaaatatccgctggagatcatctccaaa
gtttctgctattgatgccaacacggacaacgataacctgccatcacccatcaaaccccag
gtgtttgctgactaa
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