Nothobranchius furzeri (turquoise killifish): 107386718
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Entry
107386718 CDS
T05163
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03440
Homologous recombination
nfu03450
Non-homologous end-joining
nfu04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107386718 (rad50)
03450 Non-homologous end-joining
107386718 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
107386718 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nfu03032
]
107386718 (rad50)
03400 DNA repair and recombination proteins [BR:
nfu03400
]
107386718 (rad50)
DNA replication proteins [BR:
nfu03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
107386718 (rad50)
DNA repair and recombination proteins [BR:
nfu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
107386718 (rad50)
BRCA1-C complex
107386718 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
107386718 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
ABC_tran
Tropomyosin
zf-met
AAA_29
AAA_13
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
107386718
NCBI-ProteinID:
XP_015816776
UniProt:
A0A1A8UGU4
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All DBs
Position
sgr11:complement(24746797..24770483)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQIISFFSPLTVLVGPNGAGKTTIIECLKYATSGELPPS
SKGGAFVHDPKDAHETEVRAQIRLLFTDVNGEKVTIHRSMSCTQKAKNCTFKSLEQVITR
MKDGKKVSLPSKCGELDREMISALGVSKPVLNHVIFCHQEESNWPLSEGKALKDKFDSIF
AATKYIKALEIMRQQRLKQTQTVKECQIELRYLKQNKEKAQQIRDIVATKESQLISSKSN
IQQIDGQIEPLENRLIDIDTKFGMVMKLDNDIKALDSRKKQMEEDNKELEEKMEQVFQGS
DEELQDVYQNHQRTVREKERRLTDYQRDLERAGRECQRLNRVRADLLVEQGRLQLEADRH
AQNIKNRDAHVRSLSSYLEMEGYDRLPFTSLQLESFHRHVSQRLEQERETLRQIMDDLQE
KEQQKQQSMDEMRDKKTGLERTVELKRDMQGKKQQELRNIRADLQRLEGSSSRLQELENE
LTKLERELQLAVRSSSVEELRTDIEELQKVKTDLDRTQKQLDQEMQNLNAHTTARTQMDL
LKKDEAEKEEQIRKIKSRHGDDLVSLLGHFPNKRELEDWIYSKSKEINSTRDRLGKLNKD
LASSEQKKSHIAAELRKKEQQLMSDEERFFSVCGSQDLEQDLGKLQEDLEKISKQRAMLA
GATAVYSQFISQLTEERAPCCPVCQRTFPSESDLQEVINDMQSKLRLVPDKLKNTEQDLK
RKEKKKDEMMALRPVRQSIVQFQEKELPELRNRLQIVNRDIEKLKADVEEQETLQGTLMS
EEETAKACLPDVSLMDRYQMDLKELERKIPQLATKLQGVDLTRTIQQVSQEKQETQHKLD
TTSSKMELKHKLIQGQQDQIQKLKSEVNETRAEKLQLSSNMQKRQQLEQQSVEFTTEIQA
LTRDIREAKEQLSPLSATLEKLQQEKQELMERRRQKQEEGQEKINAIKEKVKTITAFERD
ITKYTEEGKHEYKEQKEAELQETNTQFHEAEKQKEKINKDMGNIRQDVDTQKIQERWLQD
NLTLRKRVEELKEVVAKRESRMKEMGNMQVLQLRQERRDAERKLEDLKKNRSIALGRQKG
FEEEIIQYRKELREEQYSKADEHYKDKMIIMRTTELVIKDLDLYYKALDQTIMKFHCMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSAGVKRRVYNYRVVMVKGDTALDMRGH
CSAGQKMLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSISSLSSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagatagataaaatgagcatcttgggtgtgaggagctttgggattgaggacaaa
gacaaacagatcatctctttctttagtcctctgactgttctggttggacccaacggagct
gggaaaacgaccattattgaatgcctcaagtatgcaacatcaggagaacttccccccagt
tctaagggaggtgcttttgttcatgacccaaaggatgcccatgagacagaagtgcgagct
caaattcgactcctattcactgatgtcaacggggaaaaagtcaccatccatcgctccatg
tcctgcacccaaaaggcgaagaactgcaccttcaaaagcttagagcaggtcatcacaaga
atgaaagatggtaagaaagtgagcttgccctctaagtgcggtgagctggatcgggaaatg
atttctgctctaggcgtttccaagcctgtgctgaatcatgtcatcttttgccaccaagag
gagtctaattggccgctcagcgaaggaaaagctcttaaagataagtttgactccatcttc
gctgcgaccaagtatatcaaagctctggagattatgcgccaacagcgtctcaaacagaca
cagacggtcaaagagtgtcagattgagctgcgctacctgaagcaaaacaaagagaaagca
cagcaaattagagacatcgtggccacgaaggagtctcagctaatatcatcgaagagcaac
atccagcagatcgatggccagattgagccactcgagaatcgacttattgatatcgacaca
aaatttgggatggtgatgaagctggacaatgacataaaggcgttagacagcaggaagaaa
caaatggaggaggacaacaaggagctggaggagaaaatggaacaagtgttccagggttct
gatgaggaactgcaagatgtttaccagaaccaccagaggacggtgagggagaaggagcgg
aggctgacggactatcagagagatctggagagagctggtcgagagtgtcagagactcaat
cgagtcagggccgatctgttggtagagcaaggtcgtctgcagttggaagctgaccgccac
gctcaaaacatcaagaatcgcgatgctcatgttcgctctctgtcatcctacctggaaatg
gagggttacgatcgtctgccattcacctctctgcagctcgagagcttccatcgacacgtc
tcacagagactcgagcaggaaagagaaacactcagacagatcatggatgatttgcaggaa
aaggagcaacagaaacaacaatctatggatgaaatgagggataagaagaccggcctggag
agaaccgtagagctgaagagagacatgcaggggaagaagcagcaggaactgagaaacata
agggctgacctgcagaggctcgagggttcgtccagtcggctgcaggagcttgaaaacgag
ctgactaagctggagcgcgagttgcagctggcagtcaggagctccagtgtggaggagctg
aggaccgatattgaagaactccaaaaagtaaaaacggacctggatcgtacgcagaagcag
ctcgaccaagagatgcagaatctcaacgcacacacgactgcacgcacgcagatggacttg
ttaaaaaaggatgaagcagaaaaagaggaacagatacggaaaatcaaatctcgccacggt
gatgatctggtgtccctccttggacactttcccaacaagagagagctggaagattggatc
tattccaagtcaaaggaaatcaacagcaccagggaccgacttggaaaactcaacaaggat
ttggcatcaagtgagcagaaaaaaagccatattgctgctgagctgcgtaagaaggagcaa
cagctgatgagcgatgaagagaggttcttcagtgtgtgcgggagtcaggatctggaacag
gacctgggaaaactgcaggaagacctggagaagatctccaaacagagagccatgttagcg
ggagccacagcagtttactcccagttcatcagtcagctaacggaggagcgggcgccctgt
tgccccgtgtgccagcgaacgtttccctcagagtccgatctgcaagaagtcatcaacgac
atgcagtcgaagctacgcctggttccagacaaactgaagaacacggagcaggacctgaag
agaaaggagaagaagaaagatgagatgatggctctcagacctgtcagacagtccattgtc
cagtttcaggaaaaggagctacctgagctaaggaaccgtcttcagattgtcaacagagac
atcgagaagctcaaggctgatgtggaggaacaggagactctgcaggggactttgatgtct
gaggaggaaacggcgaaggcctgcctcccagacgtctctctcatggacagataccagatg
gacctaaaagagttggagagaaaaataccccagctggcaaccaaactccagggagtagac
ctgaccagaaccatccaacaagtcagtcaggagaaacaagaaactcagcacaaactggac
acaacttcaagcaaaatggagctgaagcataaactgatccagggtcagcaggatcagatt
cagaagctgaaaagtgaagtaaacgagacgagggctgagaagcttcagctcagcagcaac
atgcagaaacggcagcaactggagcagcagagtgtggagttcaccacagagattcaggcc
ctgaccagggacatcagggaggcaaaagaacaactttcacctctgtctgcaactctggag
aaactgcagcaggagaagcaggagctgatggagcgcaggagacagaaacaagaagaagga
caggagaagatcaatgccatcaaagagaaagtcaaaacaatcactgcattcgaacgtgac
atcactaaatacacagaagaagggaagcatgaatataaagagcaaaaagaagctgaactt
caggagaccaacactcagttccacgaagctgagaagcagaaagagaagattaacaaggac
atggggaacatccgccaggacgtcgacactcagaagatccaagagcgttggctgcaggac
aatctgactctgaggaagcgtgttgaggagttgaaggaggttgttgccaaacgcgaatcc
cggatgaaagaaatgggaaacatgcaagttttgcagctgcgccaagaacgccgtgatgcc
gaacgcaagttagaggatttgaaaaagaaccgcagcattgcactgggtcgccagaaaggc
tttgaggaggagatcattcagtacagaaaagagttgcgtgaggagcagtacagcaaagct
gatgagcactacaaagacaagatgatcataatgaggaccacggagttggtcattaaagac
ttggacctgtactacaaagctcttgatcaaaccatcatgaagttccactgcatgaagatg
gatgaaataaataaaattattagagacttgtggcgcagcacttacaggggccaagacatt
gagtatgtggagatcaggtcagatgtggatgagaactcgtctgctggggtgaagcggcgg
gtttacaactatagagtggttatggtgaagggcgacaccgctctggatatgagaggacac
tgcagcgctggtcagaagatgttggcgtccctgatcatccgcctcgctctggcagagact
ttctgtctgaactgtgggatcctggctctggatgagcccaccaccaacctggaccgggag
aacatcgagtcactggctcatgctctagtagagatcattaaaagtcgctctcgtcagcgt
aacttccagctgctcatcatcacccacgacgaggactttgtggagcttctgggtcgctct
agctacatcgaacacttctaccgtatccgtaagaaccaggatcagaactctgaaatcacc
aagtgcagcatctcctccctctcttcctatctccactaa
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integrated database retrieval system
