Nothobranchius furzeri (turquoise killifish): 107386925
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Entry
107386925 CDS
T05163
Symbol
hmgb1
Name
(RefSeq) high mobility group protein B1
KO
K10802
high mobility group protein B1
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03410
Base excision repair
nfu04140
Autophagy - animal
nfu04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
107386925 (hmgb1)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
107386925 (hmgb1)
09143 Cell growth and death
04217 Necroptosis
107386925 (hmgb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nfu03036
]
107386925 (hmgb1)
03400 DNA repair and recombination proteins [BR:
nfu03400
]
107386925 (hmgb1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nfu04147
]
107386925 (hmgb1)
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
107386925 (hmgb1)
DNA repair and recombination proteins [BR:
nfu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
107386925 (hmgb1)
MMR (mismatch excision repair)
Other MMR factors
107386925 (hmgb1)
Exosome [BR:
nfu04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
107386925 (hmgb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
Ribosomal_60s
NOA36
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
107386925
NCBI-ProteinID:
XP_015817099
UniProt:
A0A1A8VES4
LinkDB
All DBs
Position
sgr11:32546268..32549962
Genome browser
AA seq
204 aa
AA seq
DB search
MGKDPTKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKGKFE
DLARQDKARYEREMMSYVPARGGKKKKFKDPNAPKRPPSAFFIFCSEFRPKVKGESPGLS
IGDVAKKLGEMWNSTAAPDKLPYEKKASILKEKYEKAVAAYRNKGKPGAGAPAKAPAPEK
KDDDDDDDEEDEEEEEDDEDDDDE
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atggggaaggacccgacaaagccaagggggaaaatgtcctcctatgcgtattttgtccag
acctgccgggaggagcacaagaagaaacaccctgatgcttctgtgaactttgctgagttc
tccaagaagtgctctgagcgatggaagacgatgtccgccaaggaaaagggcaagtttgag
gatctggctaggcaggacaaggcgcgttacgagagggagatgatgagctacgttccagca
cggggaggcaagaagaaaaagttcaaggaccccaatgcccccaagagacccccatccgct
ttcttcatcttctgctcagagttccgccccaaggtgaaaggcgagagccctggtctgtcc
atcggagacgttgccaagaagctgggcgagatgtggaacagcaccgccgcgcccgacaag
ctgccctacgagaagaaggcgtctatactcaaggagaagtatgagaaggccgtcgcagct
taccgcaataagggcaaacccggtgccggcgcgccggcgaaggcccccgcccctgagaaa
aaggatgacgacgacgacgatgacgaagaagatgaagaagaagaggaagacgatgaagat
gatgatgatgagtag
DBGET
integrated database retrieval system
