Nothobranchius furzeri (turquoise killifish): 107386946
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Entry
107386946 CDS
T05163
Name
(RefSeq) protocadherin-16-like
KO
K16507
protocadherin-16/23
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
nfu04515
]
107386946
Cell adhesion molecules [BR:
nfu04515
]
Cadherins
Cadherin related
107386946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
RET_CLD1
Cadherin_4
Big_9
TMEM154
CADH_Y-type_LIR
GRP
Orf78
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
107386946
NCBI-ProteinID:
XP_015817127
UniProt:
A0A1A8A1V1
LinkDB
All DBs
Position
sgr11:complement(33613084..33722853)
Genome browser
AA seq
3299 aa
AA seq
DB search
MPILSKRSRRRAWVSGPCLCSTLGQQRLVIYFFLILIRSATVLGALELQLDEGQPAGTIV
GDISAGLPPGETATLYFISDHEGKAVGSDLHIDETTGIITTARTLDREERDHYSFIAVTM
TGTTIEVSITVNDINDHAPVFPKKKVVLKIPEHTAVGTRFSLDPATDSDKDQLTTQGYAI
KEGNVGQTFRLETKRGANKVLYLDLVVNGILDREKRSSYSLAVEAFDGGSPRRVGSLTLE
VTVTDINDHAPVFNQSRYHAIISESLPQGSSILQVFATDDDEGDNGLILYEINRRQSDPD
RYFVIDLKSGVITLNRPLDFELKRVHELVVQAKDNASQPEVTNAFVTIHVRDFNDNQPTM
TIIFLSEDGSPRISEGAQPGQYVARISVTDPDYGEYANVNVSLEGGDGKFALTTKDSIIY
LIYVDQILDREERDSYDLRVMATDSGTPPLRAESSFTIQVTDVNDNPPLFDQQAYRQTIP
EVVYPGSFVLQVTARDRDQGPNGDVRYSLLKGKNSHSDWFSIDPITGIITTATALDFESE
PAPSITVVATDGGRPPLSSKVKVDIVLQDVNDNTPEFPKRFYNASVKENTAAGSCFLEVS
ATDRDRGSFGTITYALGSSSGSALPFTIDKETGQLCTSTALDRDDGLDKFDFTVTATDGG
GLSSVAQVRVSVVDINDNRPTFYPVLYTVSLSTHSAPGTSVVKVTANDPDAGGNGRVTYS
TAPGGGSTFFTLNKDTGVISLSRSLHGKANTVISMVISAEDGGGLTAPVNARVNVSVVGG
SVMSPVFEQGQYFFTVSEDVLRGTAVGVVRSATKTGASKGIFYSISSGDPDGFFTVDSAS
GTIRTALPLDHETCSSLDLEIQARSGSPPAYGISRVRITISDVNDNAPTFLPSSSESLLL
PEITKMGTVIYRIQATDKDSGHNGQLSFDLVSAGAAGNSGQRTFGVDRGSGEIRLIGSLS
YENVPRYDLQVIAKDGGAPQLSSTFTLVVHIQAQDAKGPTFDTLTYRVELRENTPLNTRF
LQVRALNREASGNGGTPPSSSSSSISYRLRPDGDAAGFGIMPDSGWLFVRNSLDRELKDM
YLLTVLATSGPGGAGRTGSATVRVTVTDENDNSPRLNQERVFLAVRENLLAGTGFGRVSA
TDRDAGLNARLTYRLLHSDQHFQINSQTGEISTRLGLDREQHSSYQLVVVVQDGGTPPRS
ATGTAHITVVDENDHPPSFTHSRPDRELLLQVTEGLPSGTLVGTLMAKDPDEGENGTVFY
SLSGPRAERFSLNPNSGELRTASPLRWAERAEYVFTVTAADHGTPGLSSTCQIRVQVLSS
SRSAPKPNVLSMTLNTVEGAAPGSVIGSVRPVNQHESAVLEGQVTYLVVGGTDQDGTFMV
DRLKGDVYLVRELDYEKGSRYTLHIEVSDFSQAFPISRLVKLDINVQDSNDHAPEFSEDP
VTVVIPENVEPGASIYTFQALDQDGSGPNSDLRYSIEHRWPAMSDLLILDPSSGVLSLGQ
KLDHETTPSLYLVVRATDQAVDPSKRRWGSVTTRLFVTDENDNAPVFSSPSAVSVMEDQS
VGFVILYVVARDKDEGENGRVSYKIRAGNGAGHFSLNPNTGSLSILKVLDREEQDVFNLT
VVAEDHGIPRLSTTQVLCVQVIDVNDEAPVFQQQEFEAQVTENQEPGTTVLTVAATDRDQ
GSNGQITYGGVTEEGFIINPVTGVITTTKELDTETQHHYTLTVYARDGGLPPNFAKAVVR
VDVLDVNDNAPVFAKLWYGLKVPENQAPVELCFLKATDPDSGPGGELEYRITAGDPDGDF
QLHPGTGALSTSRNLDREKKAEYNLDVVAMDRGSPALSATAAVQVKVLDVNDNSPAFTRS
SYTAEVSEDAKEGSKVLEVSAVDADEDFNGKVLYYLSPEAHGAFAVDGNTGRITTSAPLD
REKMASYTFQVFAVDLSPSAPRNSSAQVKVTVLDINDNAPLFIQDPLIIEVSSKRSPQVL
ATMKAEDKDFGANGSVFYRFATPVKGFSINSLTGEIQATEPLRDLTQAQRTLIVEAMDQG
SPAQSSQGVVVIYVKEVEYYGIRFSRNAIDVSIQENAAKGTAVAQAQAQLPGGTGKGISY
SLFSGNRKHAFSISSATGEIWVESSNGLDFEDNPRLRLVVKAETVTSTSFMAFNLVLQDV
NDNLPRFQLQNYVAYMKEAQGYEMPIIQVVAEDVDQGQNGQVTYSIQSSVMSGLFKIDPV
TGSITTAAIMDREIFTQTKLVVTATDRGSPRLAGSATLTVIIVDQNDNSPTIPLPQEIRI
PENTLIGTEITLVTGNDVDSSPALSYSLKLDPTALEKFGIHRYSGGVSLTGSLDFEEKTW
YTVTVRATDSQHQTEANITIVVEDINDNAPVFTHDLYQVTLPEQTPPGSAVITVTATDRD
SGDNGRITYRVMSSTQEGFYIDPRNGTLFINHRAEFDPERPSVNIVIEARDGGEPPLSSL
TTIQVQISDINDNAPVFHQSEYRATVSEDAIAGATILTFEAFDSDLSRDNCGFDFAIASG
NEGNAFQIESSVRFLEGRGFQTVGTLLLAEGLDFETKPLYNLTVVVSDRGVPQRSSSVAA
VINIADVNDNPPVFSRTEYTVSLSEGAASGTEIIRLTATDFDSTPNAEVQYIISSGDDVN
LFSIDQWTGALRLQQQLDREHQSTHTVIIQATDGLGHFALAPVIVEVKDVNDNHPFFPVE
VLTASIRENQPANSAVTVLHAIDHDTGVFGQLKYYMVERSGAGKDSFAVDHSSGEIRSKV
PFDFEKINSFNFEALAVDSGNHSATVTVQVFVTGEDEYDPLFTSADFTFEVPEGAKKGQI
IGQVQANDEDGGVDGIVLYSLTSNSPYFDVNKTTGVIFLKLDNSGSRSASGSGRTKRETR
VMTLDVKAHSPLDTSRSATAQISIDVTNTNFGLAADVNILLISIIAVSLGFIILLVVMAV
VVFVVKSRRRKKGQDAGNRTLASGNALKKLDETGPGGDSIYHQTLPGYVGDQGGPGGGSY
TRGGSLDPSHSSGRGSAEAAEDDEIRMINEYPRVASITSSMQEHISARGPDSGIQQDADQ
LSDISCEPAALEGSTWFKGKKLGGSLSGTLLSGQLPVYRDEGSSYLGVGRGLNISLPKDY
AFPEDGKPSVDGSLTAIVASDEELRGSYNWDYLLNWCPQFQPLANVFTEIARLKDETAQQ
SQNPRQPFQPKPKVDPKPRIDPPPLITCVAHPGAMSVPPKVPVIGRTFPHLSSLRRSPIS
HEGSISSAAMSPSFSPSLSPLAARSPAVSPFGVNQGPSASMISTREPSLDRSPDHEMRI
NT seq
9900 nt
NT seq
+upstream
nt +downstream
nt
atgccaatattaagtaaaaggtcaagacggagggcttgggtcagcggaccctgcttgtgt
tcgactttgggccaacagaggctggtgatttatttctttctcatcctgattcggtcagca
actgttcttggagcgctggagcttcagctggatgaaggccagccagcagggaccatagtt
ggagatatcagtgcgggattgccacccggtgaaacagcaaccctttacttcatctctgac
catgagggtaaagcagttggcagcgacctccatatagacgagaccacgggcatcattaca
acagcgcgcactctggaccgtgaggagagggaccactacagcttcatcgctgtgacgatg
acgggtaccaccattgaggtttctatcactgttaacgacatcaatgatcacgctcctgtt
ttccccaaaaagaaggttgttcttaagatccctgaacacactgcagtggggacgaggttt
tccctggaccctgcgactgattccgacaaagaccagctgaccactcaaggctatgctatt
aaagagggaaacgtcggccagacattcagacttgagactaaacgaggtgctaacaaggtc
ttgtatctagatttagtggtcaatggaattctggatagagagaaacgctcgtcgtactca
ctggctgtagaagcttttgatgggggctcgcccaggagggttggatctctgactctggaa
gtgacagtaactgacatcaacgatcatgcccccgtcttcaaccagagccgatatcatgca
atcatctctgagagtctcccacaaggaagcagcattctgcaggtgtttgctacagatgac
gacgagggcgacaatggtctcatcctttatgaaatcaaccgccgtcagagcgaccctgac
cgctactttgtcattgatttaaaatcaggggtcatcactctaaatagacctctggacttt
gagctgaagagggtccatgaactggtggtccaagccaaagataatgccagccagcctgag
gtgaccaatgcgtttgttaccattcatgtccgtgacttcaatgacaaccagcccaccatg
accatcatctttctcagtgaggatggctccccaagaatttcagagggagcccaaccaggc
cagtatgtagctaggatatcagtcaccgacccagactatggagagtacgccaatgttaac
gtctcccttgaggggggtgatgggaagtttgctctcacaaccaaagacagcatcatttac
ctgatatatgtagaccagatattggacagagaagagcgtgattcctatgacctcagggtg
atggccacagactcgggtacgcctcctcttagggcggagtcctccttcaccatccaagtg
actgatgtcaatgacaaccctcctctgttcgaccagcaggcctatagacagaccattcct
gaggttgtgtaccctgggtcctttgttcttcaggtaacagccagggacagggaccagggc
cccaatggggacgtgcgatacagcctactgaagggcaaaaactctcactctgactggttt
tcaatcgatccaattacggggatcattacaactgcaactgctctggactttgaatcagag
ccagccccgagtataactgttgttgcaacggatggtggccgcccccctctgtcgtccaaa
gtgaaggtagacattgtgctgcaggacgtcaacgacaacactccagagtttcccaaaagg
ttctacaatgcctctgttaaagagaacactgcagctggatcctgcttcttagaggtgtca
gccacagacagggatcgagggtctttcggtactatcacctatgccctcggctcaagttct
ggaagcgctttgccgtttaccatagacaaggagaccggacagctttgcaccagcactgcc
cttgaccgggatgatggtttggacaagtttgactttactgtcacagcaacagatggaggt
ggtttgagctcagtagcccaagtgagggtctcagtggtggacatcaatgacaatcggcca
acattttatccagtcttgtacaccgtcagtctgagtacccacagtgccccaggaacctcc
gttgtcaaggtgacagccaatgatcccgatgcgggaggaaacggcagggtgacctacagc
acagcacctggaggaggctccactttcttcaccctcaacaaagacacaggagtgatttct
ctctctcgctcactccatggaaaagccaacacagtcatctccatggtgatatcggcggag
gacggcggcgggctgacggcacctgttaatgcccgagtgaatgtgagcgtggtgggaggc
tccgtgatgtctccggtgtttgagcagggacagtatttcttcacggtgtccgaggatgtt
ctccgggggacggcagtgggagtggtgcgctctgctactaagacaggtgcttctaaaggt
attttctactccatctcttctggagaccctgatggcttcttcacagtggacagtgcctct
ggcaccatccgcacagctcttcctctggaccatgaaacctgctccagtcttgacctagag
atccaggcccgctccggctcacctccagcctatggcattagccgagtgcggattactatt
tcagacgtaaatgacaacgcccccaccttcctcccatcttcatcagagtctctacttttg
cctgagatcaccaaaatggggacagtaatctaccgaattcaggccacagacaaagactct
ggtcataacggtcagctgagctttgacctggtgtctgctggggctgcaggcaacagcggt
cagagaacgtttggggttgaccgtggcagtggcgaaatacgtttgattgggagtctttca
tatgaaaatgtcccacgctatgatcttcaggtgatagccaaagacgggggagcgcctcag
ctgagctccaccttcacactcgtggtgcacatccaagcccaggatgcaaaaggccccacc
ttcgacaccctcacctaccgagtggagctgcgagaaaacactcctctcaacacacgtttc
ctccaggttcgagcactcaacagagaggcttctgggaatggtggaacccctccatcttca
tcctcctcgtcgatttcctaccgtctcaggcccgacggcgatgctgctggattcggcatc
atgccggactcggggtggctgtttgttcggaactctctggacagagagctcaaagacatg
tacctgctgactgttctcgccacttcgggtccaggaggggccgggagaaccggcagtgcc
actgtcagggtgactgtaaccgacgagaatgacaattccccaaggttgaaccaggagagg
gttttcctggctgtcagagagaacctgctggcaggaacgggtttcggtagggtgtctgcg
accgacagagacgccggactaaacgctcggctcacgtacagactgctgcactcagaccag
cactttcagatcaactcacaaacaggtgagatcagcactcgcctcggcctggaccgagag
cagcactccagctatcagcttgtggtggttgtacaggacgggggtacgcctccccgcagc
gccacagggaccgcccacatcaccgtggtggatgagaatgaccacccacccagcttcact
cattccagacccgacagggagctgctacttcaggtgaccgaggggcttccgtctgggacg
ttggtgggaacgctgatggccaaagacccagatgagggagagaatggcaccgtgttctac
tctttatcaggtcctagagcagagcgcttctccctgaaccccaacagtggcgagctgagg
accgcttcgccgctgaggtgggccgaacgagccgagtacgtctttacagtgactgctgca
gaccacggcactccaggcctcagctccacctgccagatacgcgtacaggttctcagctcc
tccaggtctgcccccaagcccaatgtcctctctatgaccctgaacacagttgaaggggcc
gctccaggctctgttatcggctcagtgcgtcctgttaatcaacacgaatcagctgttctg
gaaggacaggtgacctacctggtggtgggagggaccgaccaggacggcactttcatggtg
gaccgtctaaagggcgacgtgtatctggtgcgagagctggactacgagaaggggtcgaga
tacaccctgcacatcgaggtgtctgacttctctcaggcgtttcccatcagccgactggtg
aagctcgacatcaatgtacaggatagtaacgaccatgcccccgagttctccgaagatccc
gttacagttgtgatcccagagaacgtggagccgggggcttccatatacacgttccaggca
ttagatcaggatggcagtgggccaaacagtgaccttcgttattccatcgagcaccgctgg
cccgccatgtctgacctcctgatcctggacccatctagtggagttctgtcactggggcag
aagttggatcatgagaccacaccttccctctacctcgttgtgcgggccacagaccaggcg
gtggatccctctaagaggcgatggggttccgtcaccactcggctgtttgtgacggatgaa
aacgacaacgctccagtctttagctctccgtctgcagtcagcgtcatggaggatcaatct
gttgggtttgtgattttgtacgtggtggcgcgagataaagacgagggagagaacggcaga
gtatcgtacaaaatccgagcaggcaacggcgctggtcactttagtctgaatcccaacaca
ggttccctctccatccttaaagttttggaccgggaagagcaagacgtctttaatctaaca
gttgtagcggaggatcatgggatacctcggctctccaccactcaggtactgtgtgtgcag
gtgattgatgtgaacgatgaagctccagtcttccagcagcaagagtttgaggcacaggtg
acggaaaatcaagaacctggaaccacagtgctgactgtggctgccacagaccgggatcaa
ggttctaacggtcagataacatatggaggtgtgacggaggaaggtttcatcattaatcct
gtgacaggtgtcatcaccaccacaaaggaacttgatacagaaactcagcatcactacaca
ctcactgtgtatgccagagatggaggtctgcctcctaattttgccaaggcggtagtccgt
gtggacgtgctggacgttaatgacaacgctccggtctttgccaaactgtggtacggattg
aaagtaccagaaaaccaggcgcctgttgaactttgtttccttaaggccacagatccagac
tcgggtccgggtggagaactagagtacagaattactgcaggggaccctgatggagatttt
caactccaccctggcacaggcgccctgtccacctcacgcaacctcgatagggagaaaaaa
gctgaatataacctggacgtggtggccatggacagaggtagccctgctctcagcgctact
gcagcggtacaagtcaaagtgctggacgtcaatgacaacagccctgcctttacgaggagt
agttacacggcggaggtttctgaggatgctaaagagggttctaaagtcctggaggtatca
gctgtagatgctgatgaggactttaatgggaaggttctgtactatctcagcccagaggca
cacggagcattcgctgtggatgggaacacaggtcgcatcacgacatctgcccctctggat
agagaaaaaatggcgtcatacaccttccaggtgtttgctgttgacctttcaccttctgcc
ccaaggaactcctcagctcaggtaaaggtcaccgtcctcgacatcaacgacaacgctccc
ctcttcatacaagatccgctgatcatcgaagtgtccagcaagcgttccccgcaggttttg
gccaccatgaaagctgaggataaggactttggagccaacggttctgtgttttatcgcttt
gccacccctgtgaagggcttcagtatcaactccctgactggggagattcaggccactgaa
cccctgagagatcttactcaggctcagaggaccctgatagtggaggccatggaccagggc
agcccagcgcagtcctctcagggggtggtggtgatttacgtcaaggaagtggagtattac
ggcatccgattctctaggaatgccatagatgttagcatccaagaaaacgcagcaaaaggc
acagctgttgctcaggctcaggcgcagcttccaggtggtacgggtaaagggattagctac
agcctcttcagtggaaacagaaagcacgccttcagtatcagttctgcaacgggtgaaatt
tgggtggagagttccaacggactcgactttgaggacaacccgagactccgcctcgtagta
aaagctgaaaccgtgacctccacatccttcatggctttcaacttagtcctacaggatgtg
aacgacaaccttcctcgcttccagctgcagaattatgtggcctacatgaaagaagcacaa
ggatatgagatgccaatcatacaggtggtggctgaggatgtagatcaaggccagaatggt
caggtgacttattccatccaatcatcagtcatgagtggcctgttcaagattgacccagtc
acaggaagcatcaccacagcagccatcatggaccgggagatcttcacacaaaccaagctt
gtagttacagcgactgatagaggaagtccacgactggccggttctgccactctaacagtg
ataatcgtcgaccagaatgacaacagccctactattcccttgcctcaggagatccgcatc
ccagaaaacacgctgataggaacagaaatcaccctcgtgacaggcaacgacgttgattcc
agtcctgccctttcctactccttgaagcttgatccaacagctttagagaaatttgggatt
catcgctacagtggtggcgtgtctttgactggttctttagactttgaggagaagacgtgg
tacacggtgactgtcagagctacagacagccaacaccaaacggaggctaacatcaccata
gtggtggaggatattaacgacaatgcacctgtgttcacccatgacctctatcaagttacc
ctgcctgagcagacaccacctggaagtgcagttatcacagtgacagccactgacagggac
tccggagataacggaaggatcacctacagggtcatgtcttccacacaggaggggttctac
atagaccccagaaatgggaccttgttcattaaccaccgagcagagtttgaccccgagcga
ccatcagtcaacatcgttatcgaagctcgtgatggaggtgaacctcctctctcttccctc
actacaatccaagttcaaatctctgatatcaatgacaatgccccagtatttcaccagtca
gagtacagagcgactgtttcagaggacgccatcgcaggtgcaacaattctgacttttgag
gccttcgacagcgatctttcaagagacaactgtggctttgactttgccatcgccagtggg
aatgagggaaacgccttccagattgaaagcagtgtgcgcttcttggaagggcggggcttt
caaactgttggaactctcctgttggctgaggggcttgattttgaaacaaagccactctat
aatctcacagtggtggtgtcggaccgcggcgtgccccagaggagctccagcgttgctgca
gtgataaacattgctgatgtaaatgataatcctccggtgttcagcagaacagagtacacc
gtgtccctcagtgagggagcagcctctggtactgagattatacgactgacagcaacagac
tttgactcaactcccaatgctgaagtccagtacatcatcagttctggtgatgatgtgaac
ttgttctccattgaccagtggactggagcattgcggcttcagcaacagctagatcgggaa
catcaatccacacatactgtaattattcaagctaccgatggtcttggtcactttgcgctt
gctccagtcatcgttgaggttaaagacgtaaacgacaaccatccattcttccctgtggag
gtcctgacagctagcatccgggaaaaccagccagcaaactcagccgtgactgttcttcat
gccattgaccatgacacgggggtgtttggccaactgaaatactacatggtcgagaggtca
ggagcaggaaaagacagctttgctgtggaccacagttctggagaaatcagaagcaaagtt
ccttttgactttgaaaagatcaactctttcaattttgaagcgctggctgtagattcgggg
aatcattccgctactgtaactgtacaggtctttgtcaccggtgaggatgagtatgatcca
cttttcacatctgctgattttacttttgaagttccagagggagccaagaaaggccagatc
atcggccaggttcaagcaaacgatgaggatggaggtgtggacgggatagttctctactct
ctaacttccaattcaccatattttgacgtcaacaaaacaactggtgtgatttttctgaag
ttggacaattcaggcagtcgtagtgccagtggatcaggtcggacgaaacgagaaactagg
gtaatgaccctagatgtcaaagcacacagtccacttgatacatctcgctctgcaacagcc
cagatctccattgatgtcacaaacaccaacttcggcctggcggctgacgtgaacatcctg
ctcatcagcatcatagctgtgtcacttggcttcatcatattgcttgttgtcatggctgtg
gtagtgtttgttgtcaagtcacgaaggaggaagaaaggccaggatgctggaaatagaact
ctcgcatcaggaaatgctttgaagaaactggatgaaacaggaccgggaggagacagtatt
taccaccagactttgccaggttatgttggtgatcagggtgggcctggcggtgggtcttac
actagggggggttctttggatccctctcactctagtggaagaggttcagcggaggcagca
gaggatgatgagattagaatgattaacgagtacccccgtgttgcctctattacctcgtct
atgcaggaacacatctcagccagaggaccagactctggaatccagcaagatgcagatcag
ctttccgatatttcctgtgagcccgctgctttggaaggcagcacctggttcaaaggaaag
aaactgggaggcagtctgagtgggactttactttctggtcagcttccagtttatcgggat
gaaggaagtagttacctaggagttggccgtggtttgaacatttcccttcccaaggattac
gcgttcccagaagatggtaaaccttcagtggatggttccctcactgctattgttgcaagt
gatgaggagcttcgtgggagctataactgggactaccttctcaactggtgccctcagttc
caaccccttgctaatgtcttcactgagattgcgaggttgaaagatgaaactgctcaacag
agtcagaacccccgtcagcccttccagcccaagcccaaagtggatcccaaaccaagaatt
gaccctccaccactcatcacatgcgtggctcacccaggggccatgtcagttccccctaaa
gtccctgtgattgggcggacattcccccatttatcctcactccgaaggtccccaataagt
catgagggatctatttcatcagcagcaatgtctccgagcttttcgccatcattgtcccct
ttggcggctcgatctccagctgtttctccatttggagtcaaccaaggaccctcagcatct
atgatcagcacaagggagccctcgcttgaccggagtcctgatcacgagatgagaatatga
DBGET
integrated database retrieval system
