Nothobranchius furzeri (turquoise killifish): 107387411
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Entry
107387411 CDS
T05163
Symbol
lsm2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03018
RNA degradation
nfu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107387411 (lsm2)
09123 Folding, sorting and degradation
03018 RNA degradation
107387411 (lsm2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107387411 (lsm2)
03041 Spliceosome [BR:
nfu03041
]
107387411 (lsm2)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107387411 (lsm2)
mRNA degradation factors
5'-3' decay
Lsm complex
107387411 (lsm2)
Spliceosome [BR:
nfu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107387411 (lsm2)
Complex C
U2 snRNP components
107387411 (lsm2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
107387411
NCBI-ProteinID:
XP_015817852
UniProt:
A0A1A8V8Q2
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Position
sgr12:complement(957971..962184)
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AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEAMQQKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgcttttctactcgtttttcaagtctctggttgggaaggacgtagtggtggagctcaag
aacgatctgagcatctgcggaacgcttcattctgttgaccagtacctgaacataaagttg
acagacatcagtgtgacggatccagagaaatatccacacatgctgtctgtgaaaaactgc
ttcatccgtggatcggtggtccgatacgttcagctgccggctgacgaggtggacactcag
cttctgcaagatgcggcgcgaaaggaagccatgcagcagaagcagtga
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