Nothobranchius furzeri (turquoise killifish): 107387525
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Entry
107387525 CDS
T05163
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
107387525 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfu03400
]
107387525 (msh2)
DNA repair and recombination proteins [BR:
nfu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
107387525 (msh2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_IV
MutS_III
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
107387525
NCBI-ProteinID:
XP_015818030
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Position
sgr12:20272811..20298730
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AA seq
895 aa
AA seq
DB search
MAVQPKQNLSMDSAAEHGFLSFVFLMPEKPDTTFRIFDRNDYYTVHGKDAIFAAKEVFKT
NGVIKYLGSGSRKLESVILSKPNFEAFVKDLLLVRQYRVEVYRNHSKSSKEQDWRIEYKA
SPGNLTQLEEVLFSGGTGTEGCAGVVAVRFATGADGQRVVGVGYVDAAQRTMGVCEFPDS
EIFSNLESLLVQISPKECLLAQGECSTDGNKLREVCAGETCRFYCTLLMFLFICNHFYKG
QAALASFEHGAIKHRFDLSYHLWLHSQVAMSCLAAVVRFLELLSDESNFNSFSLTTLELG
QYMRLDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIE
ERLNLSLANRKLLGGSLNQLPIRKGSYQVLLQAAFTTPLRDLQTDFLKYQEMIETTLDMN
QVEHHEFLVKASFDPVLSELREKMDVLEKSMQGVLNSAARELGLDAGKTVKLESNAMLGF
YLRVTCKEEKTLRNNKKFTTLDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEI
INIASGYVDPLQTLNNIIAQLDAVASFAVASVSAPVPYVRPRLLDNGCRRLDLVQARHPC
METDADTAFIPNDITFVEREKSFYIITGPNMGGKSTFIRQVGLIALMAQIGCFVPCEKAE
LSVIDSVLARVGAGDSQVKGVSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFG
LAWAISEHIASKIGCFCLFATHFHELTALAAQQPAVHNLHVTALTSHNTLTMLYRVKPGV
CDQSFGIHVAELACFPLSVLVVAKEKAAELEEFQEPAGDVMKQDEEPEAKRRRTDKQVGE
NLIQEFLQKVKSLPVATMTEEEVKVELKRLKQELVAKNNTYISELLSHCVSGKAV
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaagcagaacctgtccatggacagcgcggccgaacacggctttctg
agcttcgttttcttgatgccggagaaaccggacactacttttaggatatttgaccgaaac
gactattacactgttcacgggaaagacgccatatttgctgcgaaggaggtttttaagacg
aatggggtcatcaagtatttaggttcaggaagtcgaaagctggagagtgtgatcctgagc
aagcctaactttgaagccttcgtgaaagacctgctgttggtgagacagtacagagtggag
gtgtacaggaaccacagcaagagcagcaaggagcaggactggaggatcgaatacaaggcc
tctccagggaacttgactcagttggaggaggttttgttcagcgggggaaccggaaccgag
ggctgtgcaggagttgttgcggtgcgattcgcaactggagctgatggacagcgtgtggtt
ggcgtgggctacgtggacgcagcacagaggactatgggagtgtgtgaatttccagacagt
gagatcttctccaaccttgagtccctgcttgtccagatcagccccaaagagtgtctttta
gctcagggggaatgcagcactgatggaaacaagctgcgggaggtatgtgctggtgagacg
tgtcggttttactgcactctgctcatgtttctgtttatttgtaaccatttctataaaggt
caagctgcattggcctcatttgaacatggtgcgattaaacacaggtttgatttaagttat
cacctgtggcttcattcacaggtggccatgtcgtgtttggctgcagtggtgcgtttcctc
gagctgctttcagacgagtccaactttaactcgttcagtctgaccacgctggagctgggt
cagtacatgaggctggacaacgctgctgtcagagctcttaatctcttccaggggtctcct
gatgacaccagcggagctcattcattggccggtttgttgaacaagtgccgcactcctcag
ggtcagcggctggtcaaccagtggatcaaacaaccactcatggataaaaccaaaatagag
gagaggttaaacttatctctggcaaacagaaagctccttggaggttcacttaatcagtta
ccaataagaaaaggcagctaccaggtgttgctgcaggcagcgttcaccacccctctcaga
gacctgcagacagacttcctaaagtaccaggagatgattgaaaccacactggacatgaac
caggtggaacaccacgagttcctggtgaaggcttcgtttgatccagttttgagtgagctc
agggaaaagatggatgtgctggaaaaaagcatgcagggtgtactgaacagtgctgccaga
gaactgggtctggatgcaggaaagactgtgaagctggagtccaacgccatgttgggtttc
tacctgagagtcacgtgcaaggaggagaagactctgaggaacaacaagaagttcaccaca
ctggatgttcagaagaatggcgtgcgctttacaaacagcaagctgagttctctgaatgag
gagtacaccaaaagcagagaggagtacgaggaggcccagaacgccatcgttaaggagatc
atcaacatcgcctcaggttatgtggatccccttcagacgctcaacaacattatagctcag
ctggacgctgtggcgagttttgccgtggcatccgtgtctgcccccgtcccgtatgtccgc
ccccgtcttttggataatggctgtaggcgtctggatctggtgcaggccagacatccctgc
atggagactgatgcagacactgccttcatacccaatgacatcaccttcgtcgagagagag
aagagcttctatatcataacgggaccaaatatgggtggcaagtccacgttcatccggcaa
gtgggtttgattgctctgatggctcagattggctgcttcgtgccgtgtgagaaggcggag
ctcagcgtgattgacagcgtcctagctagagtgggagctggggacagccaggtgaaagga
gtgtccaccttcatgtctgagatgttagagacagctgccattctccgctcggccacagag
aactctctcattatcatcgacgagcttggcagaggaacatccacgtatgatggctttggg
ctggcctgggccatcagcgagcacatcgcctctaaaatcggctgcttctgcctgtttgct
actcatttccatgagctgacggccctggcggcgcagcagcccgccgtccacaacctgcac
gtcaccgcgttgacatcacacaacacgctcaccatgctgtacagagtcaaaccaggtgtg
tgtgaccagagttttgggatccacgtggctgagttagcttgcttccctctgtcggtgctg
gtggtggcgaaggagaaggcggcggagctggaggagttccaggaacctgcaggagatgtc
atgaagcaggatgaagagccggaggccaagagacgacggacggacaaacaagtgggagaa
aacctgatccaagaatttctgcagaaggtgaagtcacttcctgttgccaccatgactgag
gaggaggtgaaggtggagctcaagaggttgaagcaggagttggtggccaagaataacacg
tacatcagtgagctcctttctcactgcgtttctggtaaagctgtctga
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