Nothobranchius furzeri (turquoise killifish): 107387696
Help
Entry
107387696 CDS
T05163
Symbol
rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nfu03016
]
107387696 (rtcb)
Enzymes [BR:
nfu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
107387696 (rtcb)
Transfer RNA biogenesis [BR:
nfu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
107387696 (rtcb)
Prokaryotic type
tRNA splicing ligases
107387696 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
107387696
NCBI-ProteinID:
XP_015818300
UniProt:
A0A1A8U257
LinkDB
All DBs
Position
sgr01:95929936..95937288
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLEKINSTSWRIKNGFVPNMQVEGVFYVNESLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNNPEAVVSPGGVGFDI
NCGVRLLRTNLDEQDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYDD
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLARQAFSKVFNTTPDDLDMHVIYDVSHNIAKVEE
HMVDGRQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTERGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagttacaacgatgaactgcagtatctggagaaaatcaacagtaccagctgg
aggatcaaaaatgggttcgtgcccaacatgcaggttgaaggagttttctacgtgaacgag
tccttggagaagctgatgttcgaggagcttcgtaacgcctgtcgtggtggaggtgtgggc
gggttcctgccggctatgaagcagatcgggaacgtcgcggctcttcctgggattgttcat
aggtccatcggcctcccagacgtccactctggctatgggtttgcgatcggaaacatggcg
gccttcgacatgaacaaccctgaggcggtcgtgtctccaggtggagtcggttttgacata
aattgcggcgttcggctcctgaggacaaacctggacgagcaggacgtccagcctgtcaaa
gaacagctagcccagtctctgttcgaccacatccctgtcggagttgggtccaaaggtgtc
atccctatgggagccaaagacctggaagaggctctggagatgggggtggactggtcgctg
agggagggctatgcctgggctgaggacaaggagcactgtgaggagtatggcaggatgctg
caggctgaccccaacaaggtgtcctccaaggccaagaagagaggcctgccacagctggga
actctgggagcaggaaaccactacgctgagatccaggtggtggatgagatctatgatgac
tacgcagccaagaagatgggcatcgaccacaagggccaggtgtgtgtgatgatccacagc
ggcagcagaggacttggacaccaggtcgccacagacgctctggttgccatggagaaggcg
atgaaacgtgataaaatcacggtgaacgaccgccagctggcctgcgctcgcatcacctcc
caggagggtcaggactacctgaagggcatggcggcggcaggaaactacgcgtgggtcaac
cgctcgtccatgaccttccttgccagacaggccttctccaaggtcttcaacaccacacca
gacgacctggacatgcacgtcatctacgacgtgtcccacaacatcgccaaggtggaagag
cacatggtggacgggaggcagaggacgctcctggtccaccggaaaggatccacccgagca
ttccctccacatcaccccctcatccccgtagattaccagctcaccgggcagcccgtgctg
atcggagggacgatgggaacctgcagctatgttctgacggggaccgaacgaggcatgacg
gagacgttcggcaccacgtgtcacggagcgggtcgcgccctctcgcgagccaagtctcgc
cggaacctggacttccaggatgttctggacaagctggctgacatgggaatcgccatccga
gtggcttcacccaaactggtcatggaggaggctccagaatcctacaagaacgtgacggat
gtggtcaacacgtgtcacgacgccggcatcagcaagaaggccatcaagctgaggcccatc
gctgtgatcaagggctga
DBGET
integrated database retrieval system
