Nothobranchius furzeri (turquoise killifish): 107387726
Help
Entry
107387726 CDS
T05163
Symbol
trim8
Name
(RefSeq) probable E3 ubiquitin-protein ligase TRIM8
KO
K12001
tripartite motif-containing protein 8 [EC:
2.3.2.27
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nfu04121
]
107387726 (trim8)
Enzymes [BR:
nfu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107387726 (trim8)
Ubiquitin system [BR:
nfu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
107387726 (trim8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_10
RING_XB3-XBAT31
DUF3287
RT_RNaseH_2
U-box
DUF7357
Motif
Other DBs
NCBI-GeneID:
107387726
NCBI-ProteinID:
XP_015818343
UniProt:
A0A1A7ZTQ5
LinkDB
All DBs
Position
sgr12:19225619..19236577
Genome browser
AA seq
594 aa
AA seq
DB search
MPVCIMMASDMAETWRNCFEEELICPICLHVFSDPIQLPCKHNFCRGCISEAWAKDSSLA
RCPECNHAYTQKPSLEKNHKLSNIVEKYNALSVEKATAPALQCILCRRGPPLPAVKVCLR
CNAPCCQSHIQTHLQQPCSALGHLLVEAEAVKAWTCPQHDELRLYHCEAEQTAVCQYCCF
ARCHPSHGHAVTDVELRRNDIRQNLLKQQERVEERVQEIEEQLCKLDSDKCSVEDRVCEL
KEEVRLQYQRMHQLLEEDLGRTLEALDRAQARFFQENSTQVLVLGEQRHEAQKLLSSINT
AFSKAEELSFMKNTKPVKILTDRSQACVGSSLPPYKVGNLNSKLFLSEISKREKSLKRTL
EVPLTPPSSFLQSVAAFPSGQSSGSGAEKRKHSTAFPEGNGTAGKTPAPGFKDSSSSSSS
SSSSLAKQPYLGSGATSGEGQSTNQQTLGPCAPPHISDTGSNGSGSGSLTNHHSGSVFSS
SHFPPGGSSSSHSSQQAVLPQYGGRKILMCTVDNCYCSGVPSVSGHRSHPPYPRSGSFPW
VSPQDYPPPPGLASGGPSMQGLAVRDWIDASQTHRHADFYGLYGQPSTKHYVTS
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtctgcatcatgatggcctctgacatggctgagacgtggaggaactgttttgag
gaggagctcatctgccccatctgcctgcacgtgttttctgatcccatccagctgccctgc
aagcacaacttctgtcggggctgcatcagcgaggcctgggccaaagactcctcgctggct
cgctgccctgagtgcaaccatgcatacacacagaagcccagcctggagaagaaccacaaa
ctgtccaacatagtagagaagtacaacgccctgagcgtggagaaggctaccgctccggcg
ctgcagtgcatcctgtgccgccgtggcccgccactccctgcggtcaaggtctgcctgcgc
tgcaacgctccatgctgccagtcccacatccagacacacctgcagcaaccgtgctcagcc
ctcgggcacctgttggtggaagcggaagcggtgaaggcctggacatgcccgcagcacgac
gaactccggctataccactgcgaggccgagcagacggcggtgtgtcagtactgctgcttt
gcccgctgccaccccagccacggccacgccgtcaccgacgtggaactgcggcgcaacgac
atcagacaaaacctgttgaagcagcaggagcgtgtggaggagcgagtgcaggagatcgag
gagcagctttgcaaactcgactctgacaagtgttcagtggaggacagggtgtgtgagctg
aaggaggaggtgcgcctgcagtaccagcgaatgcatcagctcctggaggaggacctgggc
cgtacgctggaggctctggatcgggctcaggcccgtttcttccaggagaattcaacccag
gttctggttctgggagagcagcgccatgaagcccagaagctgttgagctccatcaacacg
gctttcagcaaagcggaggagctgagtttcatgaagaacaccaaacctgttaaaatcctc
actgacaggtctcaggcgtgtgtaggaagcagcctccctccctacaaggttgggaatcta
aactctaaactgtttctttctgagatctccaagagagagaagagcttgaagcgaactctg
gaagttcccctcactcctccatcctccttcctgcagtccgtcgctgcgtttcccagcggt
cagagctccggctccggagcagagaagcggaaacattccactgcctttccagagggaaat
gggaccgctgggaagaccccagctccaggctttaaggactcatcctcatcttcctcgtct
tcctcctcctcattagccaaacagccctacctgggctctggcgccacctctggagagggc
cagtccaccaatcagcagactctcggcccctgtgccccgccacacatcagcgacaccggc
agcaacgggagtggaagcggctcgttgaccaatcaccactctggctctgtgttcagctct
tcgcacttccctcctggtggcagcagctcctcccactcctcccagcaggctgtgctgcct
cagtacggcggccgcaagatcctcatgtgtactgtggataactgctactgctccggagtg
ccctctgtttcaggccaccgtagccatcccccatacccacgctctggttcctttccctgg
gttagcccccaggactacccccctcctcctggcctggcctcaggaggcccatccatgcag
ggcttggcggtgagggattggatagatgcctcacagacacacagacatgcagatttctat
gggctgtatgggcaaccttctacaaagcattacgttaccagttaa
DBGET
integrated database retrieval system
