Nothobranchius furzeri (turquoise killifish): 107388356
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Entry
107388356 CDS
T05163
Name
(RefSeq) transcription factor SOX-6-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nfu03000
]
107388356
Transcription factors [BR:
nfu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
107388356
BRITE hierarchy
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Activator_LAG-3
MPS2
Motif
Other DBs
NCBI-GeneID:
107388356
NCBI-ProteinID:
XP_015819316
UniProt:
A0A8C6NNL8
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Position
sgr13:complement(7211801..7387315)
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AA seq
763 aa
AA seq
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MMSSMQTTPSFHPPPEEEEVIGQDNTSWAAEERASLKETSSPLHDLPHPDEPQSAREKPT
DAGWENVSPAVMDNETSKGCSIYAYQANSTSPPKPEECSRVFGTPERRKGSLADVVDTLK
QKKLVELTKTEQDEPSCMERLLSKDWKDRVDCINANELLGEVKGTPESLEEKERQLSTMI
GQLINLREQLLAAHDEQKKMAASQLEKQRQQMELARQQQEQIARQQQQLLQQQHKINVLQ
QQIQVQGHMPPLMIPVFPHDQRSLAAAAAAQQGFLFPPGMSYKPGENYPMQFIPSTMAAA
AASGLSPLQLQQLYAAQLASMQISPGAKMAPLPQAPLSSAPLSPSNLKSEKQSSSPITQI
KEEGSTQPLNLSARPKTAESLRSPTSPTQSLFSGTKSSPTSLGKGRIPSPIPSMGRNSSL
DILANLNSTALFGDQDTVMKAIQEARSMREQFQREQLHHQQQQSGHQSLEAKLSALSSMS
LNNSNKERLHYESLSQHLGKLGEDAGKMVHRVIDLTRPEDLDGSSITEARVFREARGRSN
SEPHIKRPMNAFMVWAKDERRKILQTFPDMHNSNISKILGSRWKAMTNQEKQPYYEEQAR
LSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQLMRSRRQEMRQFFVGPQPQISLSN
SPGGVGVYPGAITMATATPSPHLTSDCSSNSVSPEPTIPVIQSTYGVKSEPGGGSNGGGV
GALDLPGDPTNGDDDMDMYEDYEDEPKSDYSSDRETREAVGAN
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttccatgcaaacaactccttccttccacccaccgcccgaggaggaggaagtg
attggccaggacaacacatcctgggccgccgaagagcgagccagcttgaaggagacgtcg
tctcctttacatgatctgccccacccagatgaacctcagtctgccagagagaaaccaaca
gacgctgggtgggagaacgtcagccctgctgtgatggacaatgaaaccagcaaaggctgc
tccatctacgcctaccaggctaactctacctctccacccaaaccagaagagtgctccagg
gtgtttgggacgccggagcggcgcaaaggaagcctcgcagacgtggtggatactttgaaa
cagaagaagcttgtggagctgaccaagacagaacaagacgaaccgtcttgtatggagagg
ttgctttctaaggactggaaggaccgtgttgactgtattaatgcaaatgaactcctgggg
gaggttaaaggtacgccggagtcgctcgaggagaaggagcgccagctttcaaccatgatc
ggtcagctgatcaatctgagggagcagcttctcgctgcccatgacgaacagaaaaagatg
gccgcctcccagctggagaagcagaggcaacagatggagctggccaggcagcagcaggag
cagattgcccgacaacagcagcagctcctgcagcagcagcacaagatcaacgttctccag
cagcaaatccaggtccagggtcacatgcctcctttgatgatcccagtatttcctcatgac
cagcgttccctggctgctgctgccgccgctcagcaaggcttccttttcccacccggcatg
tcctacaaaccaggagagaattacccaatgcagttcattccatcaacaatggcagctgca
gcagcatctggactcagcccgctacagctacagcagctgtatgccgcacagctggcaagc
atgcagatctcaccaggagctaagatggctcccctcccgcaggctcctctctcctctgct
cctctctccccctccaacctaaagagcgagaaacaatcatctagtcccatcacacagata
aaggaggaaggatccacgcagccgttgaacctctcagccagacccaagacagccgaatct
cttcgctctccaacgtccccgacacagagtctgttctctggaaccaagagcagtccgacc
agcctgggcaaaggccgcatccccagccccatccccagcatgggcaggaactcctccctg
gacatcctcgccaacctgaactctacagccttattcggggaccaagacacagtgatgaag
gccattcaggaggccagaagcatgagggaacaattccagagggagcagctccaccatcag
cagcagcagtcgggacaccagagcctggaggccaaactgtccgcactcagcagcatgagc
ctgaacaacagcaacaaggagcggctgcactatgagtccctgagccagcaccttgggaag
ctcggagaggatgctgggaagatggtccatcgagtcatagacctgacaagaccagaggac
ctggatgggagtagcattacagaggcacgagtgttcagggaggcacggggcaggagcaac
agtgagccccacatcaagaggcccatgaacgcattcatggtttgggctaaagacgagagg
aggaagatcctgcagacctttcctgacatgcacaactccaacatcagtaagatccttggt
tcccgctggaaagccatgaccaatcaggagaagcagccatactacgaggaacaagcccgc
ttaagcaagatccacttggagaaatatcccaactacaagtacaagccccgacccaagaga
acctgcatcatcgacggcaagaagctgcgcatcggagaatacaagcagttgatgcgctca
cggcgtcaggagatgagacagttttttgtggggccccagccacagatttccctcagcaac
agtccaggaggtgtaggagtttatccaggtgcaataaccatggcaacagccacaccatcc
ccacatctgacctcagactgctcaagcaactcagtcagccctgaacccaccatcccagtc
atccagagcacatacggggtgaagtctgagcctggtggaggcagcaacggaggcggggtg
ggagccctggatctgcctggtgaccccaccaacggagatgatgatatggacatgtacgag
gactatgaagatgagcctaaatcagactatagcagcgaccgcgaaacacgggaggctgtc
ggcgctaactga
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