Nothobranchius furzeri (turquoise killifish): 107388692
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Entry
107388692 CDS
T05163
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nfu03009
]
107388692 (ighmbp2)
03012 Translation factors [BR:
nfu03012
]
107388692 (ighmbp2)
Enzymes [BR:
nfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107388692 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
107388692 (ighmbp2)
Ribosome biogenesis [BR:
nfu03009
]
Eukaryotic type
Other ribosome biogenesis factors
107388692 (ighmbp2)
Translation factors [BR:
nfu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107388692 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
R3H
AAA_19
zf-AN1
DEAD
Viral_helicase1
nSTAND3
Helicase_RecD
ResIII
AAA_22
AAA_16
IstB_IS21
UvrD-helicase
Flavi_DEAD
SLFN-g3_helicase
AAA_28
PhoH
AAA
NPHP3_N
AAA_25
DUF2239
ATPase
ABC_tran
AAA_18
AAA_31
MeaB
Zot
Motif
Other DBs
NCBI-GeneID:
107388692
NCBI-ProteinID:
XP_015819827
UniProt:
A0A8C6L0L2
LinkDB
All DBs
Position
sgr13:19609582..19616549
Genome browser
AA seq
978 aa
AA seq
DB search
MALEKFVSQTLELLQEEREAEIDETRIWQENVSLKDLQNKGVCLLKLQVGSQSTGLYGRT
VVVLEPRKHLGFSSLPSNSFGPGDIVGLYDTSGCSTASQIATGIVTKVGQASVSVAFDDL
KDGVSFDRDALYNLLRLVNDVTYKRMKRALNALNGYNNGPAASLISVLFGDTKPSSNSQL
HEVEFFNSNLDDSQREAVSFALSQRELAVIHGPPGTGKTTTVVEIILQAVKRGQKVLCCA
PSNVAVDNLVERLARCKTKVLRLGHPARLLESIQKHSLDAVLAQGDNANIITDIRKDIDK
AFMGMKKPDKGERVNFKREIGELRKELKTREATAITQILKGADIVLSTNTGACDDGPLKF
LPAEHFDWVVIDECAQALESSCWIALLRAPKCILAGDYKQLPPTIKSQTAASKGLSLSLM
ERLIQMYGDSVVRMLTVQYRMNSAIMEWASREMYSGRLTAHSSVEKHLLKDLPGVACVDE
TCTPLLLIDTAGCGLAEMEVADEQSKGNQGEVDIVELHIKALTEAGVKAKDIAVIAPYNL
QVDLLRQKLSARHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAENRRINVAVTR
ARRHIAVVCDTQTVQNHAFLKSLISHMTEFGETRTAFEYLRDIVPQNYTREQKDTKNCSA
ASSSTSARRKVREEKSSNKVKESQKKGTDGSSKGNTAGSQNHTKTHSSTELREQQNNKRS
AEIRQQVENFMKDLSLSNLQFPSSFNSHDRLLVHQIAEELALVHESKGEGNDRCITVSRP
AKVQQAQEETQEEETVLSLEHESSSPPSLDLKGLHLERMKREHQRREEKAQQKHVPPAGQ
GRPIKKTKGKNKTKAGACDIAAAAAPDDDFDSLISTVVKADSVCSFVKCKASVLTLGQHC
IFCNRQYCLSHHIPEVHGCGEKAKSHARMRISKEGVLYAGSGKKDNSLDPNKKAYLQRKL
DSKLKDMATQRKPKNKES
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggcactggaaaaatttgtgtcccagactcttgagcttctgcaggaagagcgagaggca
gaaatagatgaaaccagaatatggcaggaaaacgtttccttgaaggatcttcaaaacaaa
ggcgtttgccttctgaagctgcaggttggcagtcagtccacaggcctgtacggtcgcacg
gtcgttgttttagagccaagaaagcatctaggtttctcgtctcttccgagcaacagtttt
gggccaggtgatatagtgggcttgtatgacacctcgggatgttcaacagcctcacagata
gccacaggcattgtaacgaaggtcggacaagcatctgtaagtgtggcctttgatgatctg
aaggatggtgtcagttttgacagagatgctctgtacaacctcttgaggttagtcaatgat
gtcacctacaagcgaatgaagcgagccttaaatgcactaaatggatacaacaacggacca
gctgccagtttgataagcgttctgtttggggacacaaagccgtcctctaattcacagctg
catgaggttgagttttttaactcaaacttagacgattcccagagagaagctgtatccttt
gccctctcacagagagaactggctgtgattcatggacctccaggcacaggcaaaaccacc
acggtggtggagatcatcctgcaagcagttaaacgaggccaaaaggttctctgctgtgcc
ccttcaaatgttgcagtggataatttagtggaaaggttagcccgctgcaagactaaagtc
ttgagactcggtcaccctgctcggctgctggaatctatccagaaacactcgctggatgcc
gtcctcgctcagggcgacaacgcaaacatcatcactgacatccgtaaagatattgacaaa
gcatttatgggtatgaagaagcctgacaaaggagagcgggtcaactttaaacgtgagata
ggagagctgagaaaagagctgaaaaccagagaggcaacagcaatcacccaaatcctgaag
ggcgccgacatcgtgctgtcaaccaacactggagcctgtgatgacggtcctctgaagttc
ctgccggctgagcattttgattgggtggtgattgacgagtgtgctcaggctctggagagc
agctgctggatcgctctgctcagagcacccaagtgcatcctggctggagactacaagcag
ctaccgccaaccatcaagtctcaaacagctgcatctaaaggcttgtctttgagtctcatg
gagagactcatccagatgtacggagactcagtagtccgaatgctgactgttcagtaccgc
atgaacagcgccatcatggagtgggcctccagagagatgtacagtggaagactaaccgct
cacagctcagtggagaagcatttattaaaagatctgccaggcgtcgcttgtgtggacgaa
acctgcactccgctgcttctgattgacaccgcagggtgtggtctggctgaaatggaggtt
gcagatgagcagtctaaaggcaaccaaggtgaggtcgacatcgttgaactgcacattaaa
gccttgacggaagctggagttaaagctaaggatattgctgtcatcgctccgtacaatcta
caggtagaccttctgcgtcagaaactttcagcacgacacccagagctggagataaagtct
gtggatggatttcaaggcagagaaaaagaagctgtggtgctgtcgttggttcggtccaac
agaaaaggtgaggttggatttttagcggagaacagacggattaatgttgctgttactcga
gcacggcgccacatcgccgttgtgtgcgacacacaaactgttcagaatcacgctttcctg
aagtccctcataagtcacatgactgaatttggcgaaacgaggaccgcgttcgaatacctt
cgagatatcgtgccacagaattacactcgtgagcaaaaagacacgaagaactgttctgct
gcttcgtcctccacatctgccagacgaaaggtcagagaggagaagtcttcaaacaaagtg
aaggagagtcagaaaaaaggcacagatggcagctctaagggcaatactgctggttcacaa
aaccacacaaagacccactcttcaacagaactgagagagcaacagaacaacaaaagatct
gctgaaatcaggcaacaagtggagaactttatgaaggacctcagtctaagtaatttacag
ttcccctcatcgttcaactcccatgaccggctgctggtccaccagatcgcagaggagctg
gctctagttcatgagagcaaaggagagggcaacgacaggtgtatcaccgtctccaggcca
gcgaaggttcaacaagctcaagaagaaacccaggaggaagaaacggttcttagtctggaa
catgagtcatccagtccaccttcattagacctgaaaggtttacacctggagagaatgaag
agagagcatcagagaagggaagagaaggctcagcagaaacatgttcctccagccggtcaa
ggacgacccataaaaaagaccaaaggaaagaacaaaactaaagctggagcttgtgacatc
gctgctgctgctgctccagacgatgactttgactctctgatcagcacagtggtgaaggcg
gacagtgtttgtagttttgtgaagtgtaaagcctccgtgttaacgcttggacagcattgc
atcttctgcaacaggcagtattgtctcagtcatcacataccagaggttcatggctgtgga
gagaaggccaagtctcacgcccggatgagaataagtaaagaaggcgttctctatgctggc
agtggaaagaaagacaactccttggaccccaacaagaaggcctacctgcaaagaaaactg
gactctaaactaaaagacatggcaacacaaaggaagccaaagaacaaggagagttaa
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