Nothobranchius furzeri (turquoise killifish): 107389146
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Entry
107389146 CDS
T05163
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107389146 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nfu03021
]
107389146 (sf3b3)
03041 Spliceosome [BR:
nfu03041
]
107389146 (sf3b3)
03036 Chromosome and associated proteins [BR:
nfu03036
]
107389146 (sf3b3)
Transcription machinery [BR:
nfu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
107389146 (sf3b3)
Spliceosome [BR:
nfu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
107389146 (sf3b3)
Complex B
107389146 (sf3b3)
Complex C
U2 SnRNP specific factors
107389146 (sf3b3)
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
107389146 (sf3b3)
TFTC complex
107389146 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
107389146
NCBI-ProteinID:
XP_015820626
UniProt:
A0A1A8AV36
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All DBs
Position
sgr13:complement(38200927..38241985)
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AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGITHAIHGNFSGTKLQEIAVSRGKILELLRPDANTGKVHTLLTMEVFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNQFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVATAMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMACQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGDKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETSNLILIETDHNAYTETTKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGSPKAGAGQWASLVRLINPIQGSTLDQVQLEQNEAAFSVAVCRFTNTG
DDWYVLVGVARDMILNPRSVSGGFIYTYRLSAEGDKLEFVHKTPVEDVPLAIAPFQGRAL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIYTIGQRVIISDVQESLFWVRYRRNENQ
LIIFADDTYPRWVTTACLLDFDTMASADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVVMNYHVGETMLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctctacaacatcaccctgcagcgtgccactggcatcactcacgccatccatgga
aacttctcaggaaccaagctgcaggagattgctgtttccagaggaaagatcctggagtta
ttgcggccggatgctaacacgggaaaggtgcacacactcctcacaatggaggtgttcggc
atcatcagatccttgatggcgttccgactcaccggaggaactaaagattacatcgttgtg
gggagcgacagcggtcgcatcgtcatcctggaatatcatccgtctaaaaaccagtttgag
aagatccaccaggaaacatttggcaagagtggctgccgacgcatcgtccccggacagttt
ctggctgttgaccccaaaggtcgagctgttatgatcggagcgatagagaaacagaagctg
gtttatatcctgaacagagatgctgcagccagactcaccatctcctccccactggaggct
cataaggctaacacactcgtttatcacgtggttggagttgatgtcggctttgagaatccg
atgtttgcctgcttagagatggactacgaggaagctgataacgatccaacaggagaggct
gctgccaacacacagcaaacgcttacattttatgagctggatctcgggttgaatcacgtc
gtccgaaagtacagcgaagctttggaggaacacgggaatttcctcatcactgtccccggt
ggttccgacgggcccagcggagttctgatctgctctgagaactacatcacctacaagaac
tttggagaccagcccgacattcgctgtcccattcctcgccgcaggaacgacctggatgac
ccagagcgtggcatgatatttgtctgctcagccacccacaagaccaagtccatgttcttt
tttctggctcagacggagcagggagacatctttaaggtcactctggagacggacgaagaa
atggtgacagaaatcaggttgaagtactttgacacgatccccgtggcaacagccatgtgt
gtcctgaagaccggcttcctgtttgtctcctctgagtttgggaatcactacctttaccaa
atcgctcacctgggcgacgacgacgaagagcctgagttctcctcagccatgccattagaa
gagggcgacaccttcttcttccagccccgccccctgaaaaacctggtgctggtggacgaa
caagagaacctgtctcccatcatggcgtgtcagatcgctgatttggccaacgaagacacg
cctcagctgtacgtcgcctgtggacgaggaccgaggtccactctgagggtcctccgacac
ggactggaggtgtcggagatggccgtgtctgaactgcctggtaaccccaacgccgtgtgg
acggtacgacggcacgtggaagatgagtttgatgcttacatcatcgtgtctttcgtcaac
gccactctggttctgtccatcggagagactgtagaggaagtgacagactctggatttctg
ggaacaacgcccacgctttcctgctctctgctgggggaagacgccctcgttcaggtttac
ccagatgggattcgccacattcgagcagacaagcgtgtgaacgagtggaaaactccgggt
aagaaaaccatcgtccgctgtgctgtgaaccagcggcaggtggtcatcgccctgacggga
ggagagctggtctactttgagatggacccgtctggccagttaaatgaatacacggagcga
aaggagatgtcagcagacgtggtctgtatgagtctagccaacgttccgcctggtgagcag
cgttcccgcttcctggccgtcggattggtcgacaacacggtccgcatcatctccctggat
ccttcggactgcctgcagccgctgagcatgcaggctcttcccgctcagccagaaagtctg
tgcatcgtagagatgggaggtgtcgagaagcaagacgagctcggcgacaagggaaccatc
ggcttcctctacctcaacataggcctgcagaacggtgtcctgctcaggaccgtcctggac
cccgtgaccggagacctgtccgacaccagaacacgctacctggggtctcgacctgtcaag
ctgttcagagtccgaatgcaggggcaggaggccgtgttggcgatgtccagccgttcgtgg
ctcagctactcgtatcagtcacgcttccatctgactcccctctcgtatgaaacgctggag
tacgcctctgggtttgcctctgagcagtgtccagagggcatcgtggccatctccaccaac
acgctgaggattttagctctggagaaactaggagccgtcttcaaccaggtggcgtttcct
ctgcagtacacgccccgaaagtttgttatccacccagaaaccagcaacctcatcttgatc
gagaccgaccacaacgcctacactgagacgaccaaagctcagaggaagcagcagatggcc
gaggagatggtggaggctgccggggaggacgagcgagagctggccgcagagatggctgct
gctttcctcaacgagaatctcccagaagccatttttggttctcctaaagccggagcgggt
caatgggcctcgctggtgcgcctcatcaaccccattcaggggtcaaccctggaccaggtg
cagctggagcagaacgaagctgcgttcagtgttgccgtgtgtcgcttcaccaacaccgga
gatgattggtacgttctggtgggagtcgccagagacatgattctcaaccccagatccgtg
agcggaggcttcatctacacgtaccggctctctgccgaaggggataagctggagtttgtg
cacaagactccggtggaggatgtgcccttggccatcgcaccgttccagggacgcgctctg
gtcggagtgggaaagctgctgagaatttacgatcttggaaaaaagaagctgctacgcaag
tgtgagaacaaacatgttcccaacctggtgacgggcatctacaccatcggccagcgcgtg
atcatctcggacgttcaggagagcctgttttgggttcgttaccgccgtaacgagaaccag
ctcatcatctttgctgatgacacgtacccccgctgggtgacgactgcctgcttgcttgac
tttgacactatggcatcagctgacaagttcggcaacatcagcatagtgcgacttccgccc
aacactagtgatgacgtggacgaagatcccacaggaaacaaagccttatgggacagaggt
ctccttaacggagcttcacagaaggctgaggttgtgatgaactaccatgtaggagagacc
atgctgtcgctgcagaaaactactctgatccccggaggctcggagtctctggtctacacc
acgctgtccggaggcatcggcattctggtccccttcacctcacacgaggatcatgacttc
ttccagcatttggagatgcacatgcgctcagagttccctccgctttgtggcagagatcat
ctgagtttccggtcctactacttcccagtgaagaacgtgatcgacggagatctctgtgag
cagtttaacagcatggatccacacaaacagaagagtgtggctgaggagctggaccggacc
cctccagaagtttctaagaagctggaggacattcgtactcgctacgccttctaa
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