Nothobranchius furzeri (turquoise killifish): 107389194
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Entry
107389194 CDS
T05163
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107389194 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107389194 (edc4)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107389194 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
107389194 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Motif
Other DBs
NCBI-GeneID:
107389194
NCBI-ProteinID:
XP_015820695
UniProt:
A0A1A8AGI9
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All DBs
Position
sgr13:39519160..39554580
Genome browser
AA seq
1388 aa
AA seq
DB search
MASNSDIDIEGATQHLRDILKLDRPGSSADAQSSDGQRKLSFNGELNGLLGAGLLGSADR
SVMSESTRPISTDLSSVQESQRICLTGDDGTTCIPITSSNVEIVASQDSSINSKARGSNK
VKIQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANSHAMIRVLSLDFNERTLLKGFTGA
VTDLAFAHLDSSLLGCVDEAGNLMVWQLTLTGSKILDQIVVHVQRPEDTPLNSHRRLIWC
PFILDDNEENQDDVSQTLALLHEDRAEVWDIEVLRANHSIWPVDATELKEGLITVKGHTQ
RVSEGALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRCLHELRPHGGRPVSCLLFCDNH
KRQDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDLLNSSILPSLKASLDLAA
EYLILTDVQRKVLYVMELRQDLEKGKASFTAVSEFLLTHPVLSFGVRDVSHSRLRHTEVL
PAEEESESMSAEGAQGPTESRSGIQIKLYCVHTKSLQDVQIWFQPHLGSNSAGFLSHSGS
QEGLAGFSDHLTDQSSDKDSGSGSQTDLRKILPLPAPSDFLSNAANVSGAMPKLMTPDAF
MTPSTSVPASPGSSASSLTVVTAISSNSDSTNRAMDDVSQSPIRGDNSSSLGLSASTSSP
RAASAVLLPGLDGLQALASPTGPLSLDSPQVPDSPLLPPMASPTRARSPDVISSASTALS
QDMPEIASQTLQLQRGHVTSLETLPLSALQTDSMASAASALHMLTSPRTASNNGLLALEL
GGVDGAGSGPAEPELGLGNQPSLLENALSQENPGVVGGSSDGNISHTAWPAAPDITRETR
NSLRDNGLGECSRDDSERLLRSPFHRRSFHLTPNDNQDTGAEQSDPDDEIAALASSAGSC
GSRSSHRIPVKDWKSSPRSSPELKRRTKKDDSESSQSRHVDHFHVEAQDELLVLLRAQQR
DLSELWSLVETMPSAVVAQVEHVLLKQQEQEHRRLDRVLAESQNHQQQLQEQLGQQLSHA
LGSALTNRMDKVLREELKKTVPQTISKSLEPVTGQLNSTIAAKLTAVEVSLKDNVSKVVK
SKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDSFKQGTHEYIQ
QLETHMKSRKQREQDARDPVIGQLQQMIDSFQSSTDQLASSITATVRAEVQQQMQIVVGN
LQESILSHMQRIVKGEVSLAMKEQQAVVTSSIMQAMRSAAGTPVPTAHLDYQTQQANILQ
FLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQSPCPLSQPVLLSLIQQLSSNLS
TRSELKISYLEDAVMNLDHSDPLTRDHMASILGQVRPKLIAYLQQEPHSPLIKRARRLLM
MLQGLVNH
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgaattctgacatcgacattgagggagcgacccagcatcttcgcgacatcctg
aagctcgaccgtcccgggagcagcgccgatgcacagtcaagcgatggtcagagaaaactg
tcctttaatggggagctgaacggcttgctgggagcaggtctgctagggagcgccgatcgt
tcagtgatgtctgaatccaccagacccatctccacagacctcagcagtgttcaggagagt
cagaggatctgcctcacaggtgacgatgggaccacctgcatccccatcacctcgagcaac
gtggagattgtggcgagtcaggactccagcatcaacagcaaagcacgagggagcaacaag
gttaaaattcagcctgtcgccaaatatgactgggagcacaagtattattacggcaggctg
atagccgtgtccaactccttcctggcgtacgccatcagaggagccaactctcatgctatg
attcgggttctgagtttggattttaatgagcgcaccctactgaagggcttcacgggggcc
gtcacagatctggcttttgcccacctcgactcctctctgctgggctgtgtggacgaggcg
ggcaacctgatggtctggcagctcactctcactggcagcaaaatactagatcagattgtc
gttcatgtccagcgtccagaagacaccccgctgaattcccaccgtcgcctcatctggtgc
cccttcatcctggatgacaatgaggagaaccaggatgatgtcagccagactttggctctt
ctgcacgaagacagggctgaagtttgggacattgaggttttgagagccaaccacagcatc
tggcctgttgatgccacagaactcaaagaaggtctgatcacggtcaagggtcacacccag
cgtgttagtgaaggagcgctgtctcctgatggaaccgtgttagccacagccagccatgat
gggtacatcaagttctggcagatctacatagaaggtggacaggacaagcccagatgtctc
catgagctgcgacctcatggaggacgtcccgtctcctgccttcttttctgtgacaaccac
aagaggcaggacccagaggttcctttctggcgtttcctgatcacaggagcagaccagaac
caggagctgaagatgtggtgcaccgtttcctggacttgtttacaaaccatcaggttctct
ccagatctgctgaactcatcgattctgccgagcctcaaggccagtttggatctcgctgct
gaatatttgattctgacagacgtacagagaaaggttctgtatgtgatggagcttcgacag
gacctggagaaggggaaagccagtttcacggcggtgtcggagttcctgctcactcaccct
gtgcttagcttcggggtccgggacgtcagccacagccgactacgacacaccgaggtcctt
cctgcagaggaagagagcgagagcatgtcagcagagggcgctcaaggacccacagagtcc
agatctgggatccagattaagctctactgtgttcacaccaagagtttgcaggacgtccag
atttggtttcagcctcacctcggttccaactcggcaggttttctctctcactctggttcc
caggaaggtcttgccgggttttcagaccatctcacagaccagagctcggacaaggattca
ggaagcggctcacagacggacctccgaaagattcttccacttcctgccccctcggacttc
ctgtcaaacgcggctaacgtcagcggagcgatgcccaagctgatgacccccgatgccttc
atgacaccaagcacctcggttcctgcgtctcctggcagcagcgccagcagcctgaccgtc
gttacggccatcagcagcaactcggactcaactaatagagcaatggacgatgttagccag
agtcccatcagaggagacaacagcagcagtctgggactctctgcctccaccagcagccca
agagctgcttctgccgtgctgctgcccggactcgacggcctgcaggctcttgcatctcca
actggtcctctgtctctggacagccctcaggtcccagactcccccctgctgccccccatg
gcctccccgacccgggcccgctcccccgatgtcatctcgtcagcctccaccgccctctct
caggacatgccggagatcgcatcgcagaccctgcagctgcagaggggacacgtgacctcc
ctggagacgctccctctctctgctctgcagacggacagcatggcatctgccgcttctgcg
ctgcacatgctaacctcaccgcgcacggctagcaataacggtttgttagccctggagctc
ggaggggtagatggggcaggaagtggaccagctgagccagaactcggactgggaaaccag
ccgtctcttctggaaaacgcgttgtcgcaggaaaaccctggggtggttggaggatcctcc
gatggcaacatcagtcacacggcatggccggctgctcctgacatcaccagggagaccagg
aacagcctccgggacaacggtctgggggagtgttcaagagatgattcggagaggctcctg
agatcacctttccatcgacgctcttttcacctcacacccaatgataatcaggacaccggc
gctgagcagagcgatcccgacgatgaaatcgctgctttggcgtcttcggctgggagctgt
ggctctcgctcttctcacagaataccagttaaagactggaagtcctcaccgcgaagctcg
ccagaactaaagaggaggaccaagaaggatgacagtgaatcttctcagtccagacacgtg
gaccactttcacgtggaagctcaggacgagctgctggtgctgctgcgggcccaacagagg
gatttgtccgagctgtggtcgctggttgaaaccatgccgagcgccgtcgtggctcaggtt
gagcacgtgctgctgaagcagcaggaacaagaacatcgaagactggatcgggttctggcg
gagagtcagaaccatcagcagcaacttcaggagcaactgggccagcagctcagccacgct
ctcggctcggcgctgacgaacaggatggacaaagtgctgcgagaggagctgaagaagacc
gtcccacaaacgatttccaagagtctggagcccgtgacgggtcagctgaacagcaccata
gcggctaagctgacggctgtggaggtctctctgaaggacaatgtcagcaaggtggtcaaa
tccaagaacacgaccgatgcgattgggcgagcagcagccgaagccatgcagggtccgatc
caggcggcctacaaagatgccttccagagcatcgtgctgccggtgtttgagcgaggctgc
cagtccatgtttcagcaaatcaacgacagcttcaagcaaggaacgcacgaatacatccag
cagcttgagacccacatgaagagcagaaagcagagagagcaggacgcgcgggaccccgtg
atcgggcagctccagcagatgatcgacagcttccagagctccacggatcagctggccagc
agcatcacagccacggtccgggctgaggtccaacagcagatgcagatcgtggtgggaaat
ctgcaggagtccattctcagccacatgcagcggatcgtcaaaggggaggtgagcctggcc
atgaaggagcagcaggcggtggtcacctccagcatcatgcaggccatgcggtcagcagct
ggaacacctgtccccacggcgcacctggactaccagacgcagcaggccaacatcctgcag
ttcctccagcagggccagctcaaccaggccttccagcaggcgctgtcggccacggacctc
aacctggttctgtacgtgtgtgagaccatcgactcccagcaggtgttcggtcagagcccc
tgtcccctcagccagcccgtgctgctgtcgctcatccagcagctctcctccaacctctcc
acccgctccgagctcaaaatcagctacctggaggacgccgtgatgaacctggaccacagc
gaccccctgacccgagaccacatggcctccatcctgggccaggtcagacccaagctcatt
gcctacctgcagcaggagccccacagtccgctcatcaagagggcgcgccgcctgctaatg
atgctgcagggactcgtcaaccactag
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integrated database retrieval system
