Nothobranchius furzeri (turquoise killifish): 107389367
Help
Entry
107389367 CDS
T05163
Symbol
col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nfu04147
]
107389367 (col18a1)
00535 Proteoglycans [BR:
nfu00535
]
107389367 (col18a1)
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107389367 (col18a1)
Exosome [BR:
nfu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107389367 (col18a1)
Proteoglycans [BR:
nfu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
107389367 (col18a1)
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107389367 (col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
107389367
NCBI-ProteinID:
XP_015820964
UniProt:
A0A9D2Y6U1
LinkDB
All DBs
Position
sgr14:complement(141741..215260)
Genome browser
AA seq
1296 aa
AA seq
DB search
MNMRCSSWLERLVCCVLLLIPAATQREDNGVSLLQLIGDPPPDGIPQVDGPDNNPGYVFG
PDTSSGQMALAHFPSSFYRNFALIFSVKPTSDQGGVIFSITDSSQEVIDVGVRLAAVQGG
HQDVIFYYNYLGKKNSHEAARFPVPSMKDTWNWFAIAVQDDKVMFYHSCEGEPQVMRMER
SADKLELESGAGVFVGGAGGSTHDKFEGVISELRVVGDPRAAERLCEEEDDDSDMASGEG
SGVEGSEVPNRYREKHRYTTTTPSLPPIPQPPLNRKGEEATVRESGAVGAKGEKGERGDR
GEKGDRGAIGPKGEAGSGFGSRGGIRGEKGEPGERGLKGNAGFGYPGKKGDPGPPGVPGP
PGPPGPAAEYSVASDGSVVSRVPGPRGPPGAPGSQGPPGEDGEPGDPGEDGKTGPQGPPG
FPGTPGDSGQKGEKGDRGEGQPGPRGLPGPPGAPGPGYRSTFEDMEASGFSDLETVRGPR
GPPGPPGPPGPPGPSTSGSTSNSGAFGPPGKDGAPGLPGSPGLPGSDGPPGAPGPRGEKG
DSGELGLPGAIGQKGAQGDLGLPGPPGEPGLAGLPGPMGPVGPPGPAGPPGPSYRVGFDD
MEGSSGLTGIRGPEGIQGSPGLPGHPGEPGLPGADGPKGDQGPTGKDGLPGLDGFPGPPG
QKGDRGDKGETGDPGRDGTGLPGPPGPPGPPGQIIYQPSDRVRNLDNFAGGAQGGLGLPG
RAGLPGPVGPKGERGDPGPAGYGVKGEKGEPGLIIGPDGAPLYLGGLTGQKGDRGPAGPV
GPSGPYGPPGLKGEIGMPGRPGRPGVNGYKGEKGEPGGGAGYGYPGVAGPPGPPGPPGPP
GPAIPLDRYNAYDEASRSYRVVKGDKGERGDRGPPGTVSNFDIYTLKNQLKGDRGDTGVK
GEKGEPGHGYYDPRIEGLQGPPGPPGNPGLPGPKGDSIVGPSGPQGPPGPPGVGYDGRPG
PPGPPGPPGPATSPSFTGTHRPHYPVSVPGPPGPPGPPGNPGLSSGVTVLRSYDTMIATA
RQQPEGSLIYIIDKADLYLRVREGLRQVMLGQYSPFSRDLENEVVEVQPPPVIVYPHNSQ
NNGAGHYSDSGSVIRPIEPPQPRPHQPVPGSTGLVETPESVLHLAALNAPQTGDMRGIRG
ADFMCFQQARAVGLKGTFRAFLSSKLQDLYTIVRTLDRKTFPIVNLKNQVLFTSWESIFR
ENSSKMRENVPIYSFDGRDVLRDSAWPEKMVWHGSSSEGKRNMDHYCETWRIDNHALTGL
ASSLQSGYLLQQNRSSCSGSYIVLCIENAFMSSSKK
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgaacatgaggtgttcttcgtggctggagcgtctcgtctgctgcgtccttctcctcatc
ccagctgcgacgcagcgggaggacaacggagtctcactactgcagctgattggcgatccg
cctccagatgggatccctcaagtggatggacccgacaacaaccctggctacgtctttggt
ccggacaccagctcgggccaaatggcgctcgcccacttccccagctccttctacagaaac
tttgccctgatcttcagcgtgaaacccacctctgaccagggcggcgtcatcttctccatc
actgattcctctcaggaggtcattgatgttggtgtcagactggcagcggtgcagggagga
caccaggatgtcattttttactacaactatttaggcaaaaagaattcccacgaagcagcc
aggtttcccgttccgtccatgaaagacacctggaactggtttgcgatcgccgtgcaggac
gacaaggtgatgttctaccatagttgtgaaggagaaccccaagtgatgcgcatggagagg
tcggcggataagctggagctggaatccggagccggggtctttgttggtggagctggagga
tctacacacgacaagtttgagggtgtgatcagtgagctgagggtggtgggagacccccgt
gctgccgagaggctctgtgaggaagaggacgatgactccgatatggcttcaggggaaggg
agtggcgtggagggatccgaagtcccaaatcgttacagggagaaacaccgatacacgaca
acgactccatccttacctcccatcccgcagccgccgctcaacagaaaaggagaggaagcc
accgtcagagagagtggtgcagtcggtgctaaaggagagaagggcgaacgaggggacagg
ggggagaaaggagacaggggtgctattgggccaaagggagaagcaggttctggcttcggc
tcacgggggggaatccgtggagaaaagggagaacctggtgagagaggtttgaagggtaat
gcaggctttggctatccgggtaaaaagggtgatcctggaccacctggagttcctgggccc
ccgggccctccagggcctgcagctgagtattcagttgcaagtgatggctcggttgtttcc
agagtacctggtcctcgaggaccccctggagcaccaggctctcagggacctcctggagaa
gatggagaaccaggggatcccggtgaggatggaaaaactggtcctcagggacccccgggc
ttccccggaaccccaggtgactccggacagaaaggagagaagggagaccgtggagagggt
cagcctggccccaggggactaccaggaccacctggagctccaggaccaggatacagatct
acctttgaggacatggaggcttctggattctctgatctggaaaccgttcggggacctcgt
ggaccaccaggtccccctggcccccctggtcctccaggtccctccacgtcaggttcaaca
tcgaactctggagcatttggacctccaggcaaggatggagcgcctggtctgcccggttca
ccgggattaccgggctccgatggccctcctggagctcctggtccaaggggagaaaagggg
gactcgggagagctgggacttccaggagcaatcggacaaaagggagctcagggagacctc
ggtttaccgggaccaccaggcgagcctggactggctggtctgccagggcccatgggacca
gttggacctcctggacctgcagggcctcctggaccaagttatcgtgttggatttgatgac
atggagggatccagtggacttactggtatcagaggaccagaaggaatacagggttctcct
ggtttacccggacatccaggtgaacccgggctgcccggtgcagatggtcctaaaggtgac
cagggtccgactggaaaagatgggctaccgggcctggacggctttcctggacctccgggc
caaaagggtgacagaggtgacaaaggagaaacgggtgacccaggacgagatggaactgga
cttccaggtccaccgggcccccctggaccacctggacagatcatctatcagccatctgac
agagtgagaaaccttgataattttgctggcggcgctcagggtgggcttggtttacctggc
agagctggactacctggtcctgttggaccgaaaggtgaaagaggtgaccctggtccagca
ggttatggtgtgaagggtgaaaagggggagccaggattaataattggacctgatggggct
cctttgtacctggggggacttactgggcagaagggggacagaggacccgcaggaccggtt
ggaccttccggtccgtatggacctcctggattaaagggagaaatcggaatgcccggaagg
cctggtcgcccaggtgtgaacggatacaaaggtgaaaagggagaaccaggaggcggcgcg
ggctatggctatccgggagtcgcaggcccacctggacctccggggccacctggacctccc
gggccagccattcctttagatcgctataacgcctacgatgaagcttcaaggagttataga
gtggttaaaggagacaaaggagagcggggtgaccgcggacctcctggaactgtctccaac
tttgatatttacacattgaagaatcaattgaagggagatcgtggagacacgggtgtgaag
ggggaaaagggagagcctggtcatggatattatgacccacgtattgaagggctacaaggc
ccaccagggcctcccgggaacccgggcctaccaggtccaaaaggagactctatagtgggc
ccttctggacctcaaggtcctccagggccaccaggggttggttatgatgggcgtccaggc
ccccctggaccacctgggcctccaggaccagcaacatctccgtcgtttactggaacacat
cggcctcattatcctgtcagtgtccctggacctcctggtccccctggcccacctggaaat
cctggtctctcatctggggttacagttttgaggtcatatgacacgatgattgctacagcc
agacagcagccagaaggaagtcttatatacatcatagataaagcagatctttacttaaga
gtacgagaaggactacgacaagtcatgcttggacagtacagtcccttctccagagatctg
gaaaacgaggtggtggaagtccagcctccacctgtgatcgtgtacccccacaactctcag
aacaacggagcaggtcattattcagacagtgggtcagttatccgacccattgagcctccc
cagccacgaccccatcaacctgttcctggttctactggcctcgttgagacaccagaatcg
gtactacacctggctgccctgaacgcacctcagaccggtgacatgagagggattcgtggt
gcagacttcatgtgctttcagcaggctcgtgctgtcgggctgaagggaacctttagagcc
ttcttgtcttccaagcttcaagacctgtataccatcgtccgcacgttggacaggaaaacc
ttccccattgtcaacctcaagaatcaagtcttatttaccagctgggagtccatcttcaga
gaaaacagcagcaaaatgagggagaatgtcccaatatactcctttgatgggagagatgtc
ctcagggacagtgcatggcctgagaagatggtctggcatggatcgtccagcgagggcaaa
cggaacatggaccactactgtgaaacatggcgtatagacaaccacgcacttactggcctg
gcatcgtcgctgcagagtggctacctcctgcagcagaaccgcagcagctgctccggctcc
tacatcgtcctctgcatcgagaacgccttcatgtcgtcctccaaaaaataa
DBGET
integrated database retrieval system
