Nothobranchius furzeri (turquoise killifish): 107389526
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Entry
107389526 CDS
T05163
Symbol
ddx3x
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
107389526 (ddx3x)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107389526 (ddx3x)
03041 Spliceosome [BR:
nfu03041
]
107389526 (ddx3x)
03036 Chromosome and associated proteins [BR:
nfu03036
]
107389526 (ddx3x)
Enzymes [BR:
nfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107389526 (ddx3x)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107389526 (ddx3x)
mRNA cycle factors
Common to processing body (P body) and stress granule
107389526 (ddx3x)
Spliceosome [BR:
nfu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107389526 (ddx3x)
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107389526 (ddx3x)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
107389526
NCBI-ProteinID:
XP_015821178
LinkDB
All DBs
Position
sgr14:8418535..8433743
Genome browser
AA seq
720 aa
AA seq
DB search
MSHVVVDTPHGLDQQLAVLDLNSADGQGGGTGRRYIPPHLRNKEASKNAGNAFSAGRQCG
FSVVPVNFYSPGWDNGRTNGFVNGFHDNRTNGGFGGRGPLRNDRGGRGAYRGNRGGGSFN
QPLQSTGFGGFENKDGGWGGPPRDAAYNSFGGRNDRSKSAFNDRGAGSRGRYERGGFAGG
GNSRWVEDSREDDWSKPTAPNERLENELFSGSNTGINFEKYDDIPVEATGSNCPPHIESF
HDVDMGEIIMGNITLTRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQI
YTDGPGDALQAAKNSGQDNGRYGRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVRPC
VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDHCNFLVLDEADRMLDMGFE
PQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQK
VVWVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQR
DREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL
GLATSFFNDKNSNITKDLLDILVEAKQEVPSWLESLAYEHQHKSTNRGRSKRFSGGFGAR
DYRQAPGGSGGFSSNRVGRGAGGHGGNRGFGGGGFGGNFYSNDGYGGNYSHSGSVDWWGN
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgttgatactcctcacggtctagatcagcagcttgctgtcctagac
ttgaactccgctgacggacagggtggaggaactggcaggcgatacattccacctcacctg
aggaacaaagaggcttcaaaaaacgcaggaaatgccttttccgctggtagacagtgtggt
ttttctgtggtacctgtaaatttctattcaccaggatgggataacggacgcaccaatgga
tttgtgaatggattccatgacaaccgcacaaacggaggctttggagggcgggggcccctt
cgcaacgatagaggtgggcgtggcgcctaccgtggtaacaggggtggaggctcgtttaat
cagccattacaaagtacaggttttggtggttttgaaaacaaagatggtggctggggaggg
ccccctagagatgctgcctacaacagctttggtgggcgtaatgatagatccaaatctgct
tttaatgaccgtggggcgggctccagaggaaggtatgagcgggggggctttgctggtgga
ggaaacagccgttgggtggaggactccagagaggacgactggtctaaaccaactgctcct
aatgaacgactggaaaatgagctcttttctggaagcaacactgggatcaactttgagaag
tatgacgacattcctgtggaagctactggaagcaactgcccaccccacattgagagtttc
catgatgtggacatgggggagatcatcatgggcaacatcaccctgactcgttacacccgt
cccactccagtccagaaacatgctatacccatcatcaagtccaagagggacctgatggct
tgtgcccaaacaggttctggtaagactgcagccttcctgctgccagtgctgagtcagatc
tacacagatggaccaggagatgctctgcaggctgcaaaaaacagtggacaggacaatgga
agatatggccggcgtaagcagtaccccatctccctggtcctggcccccaccagagaattg
gctctgcagatctacgacgaggcgaggaagtttgcgtaccgctctcgtgtgcgtccctgt
gtggtctatggaggagctgatattggccagcaaatccgggacttggaaagaggctgtcac
ttgttggtggccacacctggacgtctggttgacatgatggagaggggcaagattggtctg
gaccactgcaacttcctggtcctggatgaggctgaccgtatgttggacatgggctttgaa
ccacaaatcagacgcatcgtggagcaggacacgatgccaccaaaaggtatccgtcagacc
atgatgttcagtgccacgttccctaaagagattcagattctggctcgagacttcctggag
gattacattttcctggcagtaggccgtgttggttccacttcagaaaacatcacccagaag
gtggtgtgggtggaggagaacgacaagaggtcctttcttctggacttgcttaatgccaca
ggtaaagactcattgaccctagtctttgtggaaacgaagaaaggagcagatgctctggag
gacttcctgtaccgtgagggttacgcctgcaccagtatccatggagacagatcccagaga
gaccgagaagaagctctgcatcagtttcgctctggacgctgcccgatcttagtggctaca
gctgtggctgctcgaggtctggacatcagcaacgtcaaacacgttattaattttgatttg
cccagtgacattgaagagtacgttcaccgtatcggccgtacggggcgtgtgggcaatcta
ggtctggccacgtcgttcttcaacgacaaaaacagcaacataaccaaagatttgctggac
atcttggttgaggccaagcaggaggttccttcctggcttgagagcctggcctacgagcac
cagcacaagagcaccaaccgaggacgctccaaaaggttctcgggtggttttggagccagg
gactaccgtcaggcacctggtggttctggaggcttcagcagcaaccgtgtagggcgaggt
gctggaggccacggaggaaatcgtggctttggtggaggtggttttggtggcaacttctac
agcaacgatggctacggcggaaactacagccactctggtagtgtggattggtggggaaac
taa
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