Nothobranchius furzeri (turquoise killifish): 107389848
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Entry
107389848 CDS
T05163
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04382
Cornified envelope formation
nfu04510
Focal adhesion
nfu04512
ECM-receptor interaction
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107389848 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107389848 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
107389848 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
107389848 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nfu04147
]
107389848 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107389848 (col4a2)
Exosome [BR:
nfu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107389848 (col4a2)
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107389848 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107389848
NCBI-ProteinID:
XP_015821737
UniProt:
A0A1A8A3K5
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All DBs
Position
sgr14:complement(24552454..24626202)
Genome browser
AA seq
1665 aa
AA seq
DB search
MQTQRSRGQRNQRLLLLCLSLTILYPGVDAGGKKHSGPCGGRDCSGGCQCFPEKGARGLP
GPLGPQGFVGPVGRPGDPGIQGPKGQKGDQGIGGIVGPKGSMGMTGVPGFDGLDGIPGHP
GQAGPRGRPGADGCNGTHGESGLPGLPGFIGPPGTLGQQGRKGEKGDTLDIKVFMQRFRG
DPGTPGSSGIFGPMGERGWEGNRGPIGPKGPPGPPGPPGPKGTMTKYLKGVKGEPGDIGP
QGPPGNYTTQQRQPIPGQPGLKGDKGEIGALADNKGETGMMGNAGLRGDSGRDGLTGLRG
DPGEPGPTGRDGTKGVRGDPGELISSGSWFTPDGPPGPPGETGPQGERGPIGDQGFPGPP
GPPASDSQQQQVWDFFGPFGFTGDKGDKGQRGERGWPAVFAGPPGIDGRVGPIGPPGPKA
SLEVLFAGDPGWRGQPGRGGLKGQKGDHGQCECKLGNFQRGLPGPAGDPGDAGIIGEFGR
EGDLGDTGPRGQDGLPGSPGTNGLQGPKGRKGNTTVATQKGLPGDPGEAGKDGPAGVPGS
PGPDGLSGFPGNRGLPGEGPRGQHGDKGYPGRPGAPGAAGLRGVPGQDVTGIKGQRGLPG
DDGISGYVGVPGTPGAPGGCSPTGEGGQVDVTGPCQPVPGPPGLPGVPGVSGPPGAQGLP
GLKGAVGVAGAKGEKGEQGEQGTGGSSGPPGFPGPRGDHGVPGRKGSIGVPGFPGHSGRY
GVQGEKGSHGEVLGASPGSQGDPGLPGDQGEKGPIGNPGNPGYSGMGGMPGMIGFKGEKG
SPGLIGEEGRPGPAGTHGFPGDPGRVGLPGPFGETGQPGITGDRGTQGDPGPPGPTGLKG
TPGEHGDFGATGEPGLPGDPGQPGGSGRPGHPGLKGSKGSHGMSGFEGMMGNPGQKGLGG
LKGEAGVSGEVGLKGLLGKQGAKGERGLTGPRGAIAVQMLVNVKGAKGDHGHQGMPGFTG
PRGSKGVYGVPGFPGSDGLPGEPSKEKGQRGDPGAQGLPGFKGMPGITGNRGITGFEGMS
GNKGIKGSPGAYGALGEDGRKGAKGDKGLRIDLPGNPGLRGEDGFAGEPGLKGLSGPTGD
MGPTGFDGIEGIKGTVGDPGLAGIPGSDGQKGTPGNQGQKGFPGIPGKEGQPGFPGFSGI
KGYPGLKGLYGLHGLKGHKGDQGTPGLEGFGRPGEPGHKGQKGEGGVHNDQPGFPGAVGS
KGYQGPQGDIGHPGQPGLPGLAGPDGTPDIPGQRGDPGFSGPTGHQGVPGSRGLPGLDAL
PGERGVQGEPGAPGFPGTKGFRGDPGQSGYKGPHGVSGRKGVKGDQGVMGVPGQIGTKGD
RGPSGPKGNTGIPGFPGPTGNRGPAPLPVITPGERGPPGVQGIMGPKGNRGEPGPQGPPG
DSGFMGPIGERGMPGISGTPGVPGFRGEPGHMGHFGLQGKEGYRGNPGIPGFPGMPGRSV
SVGYLLVKHSQSDQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRFSTMPF
LYCNPGDLCYYASRNDKSFWLSTTASLPMMPVEESEIKPYISRCSVCEAPSVAIAVHSQD
ITIPQCPAGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTAPFIECNGAKGTCH
YFANKYSFWLTTTEQEFHSQPASQTLKAGQLLSHISRCQVCMKNL
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgcagcgcagcagaggacagagaaatcagaggctgctgcttctgtgcctctct
ctcaccattctctaccccggagttgacgcaggtgggaagaagcacagtggcccgtgtgga
ggaagagactgcagcggaggctgtcaatgcttcccagagaagggtgccaggggtctacct
gggcctcttggtcctcagggctttgtgggtccagtgggtcgaccaggagatcctggtatt
cagggaccaaaggggcagaaaggtgaccaaggaattggtggcatcgtaggtcctaaaggc
agtatgggaatgaccggcgttccagggttcgatggactcgatggtattccgggccatccg
ggacaggccgggcccagaggaaggccaggagcagacggctgtaacgggactcatggtgaa
tcaggactacctggacttcccggcttcatcggaccacctggaactcttggacaacaagga
agaaagggggagaagggggacactctggacatcaaagtgttcatgcagcgcttcaggggc
gatccaggcacaccgggatccagtggaatatttgggccaatgggagaacgaggatgggaa
ggtaacagaggcccaataggaccaaagggtcctcctggtcctccaggtcccccagggcca
aagggcacaatgaccaaatatttaaagggagtcaaaggagaaccgggtgacatcggacca
caagggccgccaggaaactacacgactcagcagcgtcagccgatccctggacaacctgga
ttaaaaggtgacaaaggagaaataggagctctggctgacaacaaaggagaaactggtatg
atgggaaacgctggattgcgaggtgacagtggtagagatgggcttactggactgaggggc
gatcctggtgaaccaggaccgacaggcagagatggcactaagggagtcagaggtgatcca
ggagagttgatttcatcgggatcttggtttacacctgatggtccccctggaccccctggt
gagactggtccacaaggagagaggggtccaattggagaccagggttttcctggaccacct
ggacctcctgcttctgactcacaacaacagcaagtgtgggacttctttggaccgtttggc
tttactggagacaaaggagacaaaggtcaacgaggagaacgaggatggcctgctgtcttt
gcaggacccccaggaatcgatgggcgtgttgggccaataggaccgccaggaccgaaagca
tcgttggaagtgttgtttgctggagatccaggatggaggggacaacctggaaggggaggc
ttaaagggacagaaaggcgatcatggacaatgtgagtgcaagctcggaaacttccagcgt
ggtttgcctggtcctgctggcgatcccggggatgctgggataattggagagtttggtcgt
gagggtgatttgggagacacgggtcccagaggacaggatggacttcctggatctcctggt
accaatggccttcaaggaccaaaaggtcgaaaaggaaacacaactgttgccacacaaaaa
ggcctccctggtgaccctggagaagcaggaaaagatggtcccgcaggagtccccggttct
ccaggcccagacgggctttctggtttccctggcaaccgtggtttgccaggagaaggaccc
agagggcaacatggggacaaggggtacccagggcggcctggtgcaccaggtgcagccggg
cttaggggagtcccgggtcaagatgttacaggtatcaaaggacagcggggtttacctgga
gatgatggtatctccggctacgttggagttccaggcacacccggagctccaggcggctgt
agtccaacaggagaaggaggacaggtggatgtcacaggcccttgccaacctgttccagga
cctccaggtctccctggagttccaggggtcagtggaccaccaggtgcacaaggacttcct
ggactaaagggggcagttggtgtagctggagccaagggagaaaagggggagcagggggag
cagggcacaggtggcagttctggaccaccaggttttcctggtcctcgtggagatcatgga
gttcctggcagaaaaggttccataggagttcccggttttccaggtcattctggtcgatat
ggtgttcagggtgaaaagggtagtcatggtgaagtattaggagcatcacctggatcccag
ggtgatccaggactaccaggtgatcaaggtgaaaaaggcccaattggaaatccagggaat
ccaggctactcgggtatggggggcatgcctggtatgatcggctttaagggggagaaaggt
tccccaggcctgataggggaagagggacgacctgggccagcagggacacacggtttccct
ggggatccaggaagagtgggtctgcctgggccatttggtgaaactggccagccaggaatc
acaggggacagaggaacacaaggagatcctggtcctccaggtccaacaggattaaaaggg
acaccaggtgaacatggtgattttggtgccactggagagcccggcctaccaggtgaccca
gggcaaccaggtggaagtggacgaccaggacatccaggattgaagggaagcaaggggtct
cacggcatgtcaggatttgagggaatgatgggtaatccagggcagaagggtctaggtggg
cttaaaggagaagctggagtgagcggtgaagttggtctcaaaggacttttaggcaaacag
ggagcaaaaggtgagcgtggtctgacagggccacgtggggccattgctgttcaaatgctt
gtcaacgtgaagggagccaagggagaccacggacatcaaggcatgccagggttcactggg
ccaagaggttcaaaaggagtatatggtgtgccaggatttcctggatcagatggtcttcca
ggagaacccagcaaagagaaaggtcagcgaggtgatcccggagcacaggggttacccggc
ttcaaaggaatgccaggtataacaggaaacagaggaatcacgggcttcgagggaatgtct
ggcaacaagggaatcaaaggaagtcctggtgcctatggagcattaggtgaagatggaagg
aagggggccaaaggtgataaaggccttcgcatagaccttccaggaaaccctggactaaga
ggagaggatggatttgcaggggaaccaggtctgaagggattaagtggaccaactggggac
atgggtcctactggttttgatggcattgagggaataaagggaacagtgggtgatccagga
ctagcgggaattccaggctcagatggacagaaaggtactcctggtaatcaaggtcaaaag
ggtttccctggaattcctgggaaagagggacaaccgggcttccctggcttctctggaatc
aaaggttatcctggacttaagggtctctatgggctacatggtctaaagggtcacaaaggg
gaccaaggaacaccaggtttggagggttttggacgccctggggagccgggacataaaggg
caaaagggggagggcggagtccacaatgaccagccaggttttccaggtgcagtgggttct
aaaggttaccaggggcctcaaggtgacattggccatcctggacagccaggactcccagga
cttgcgggaccagatgggaccccagacataccaggacagagaggagatcctggattttca
ggaccaacaggacatcaaggtgttcctggttccagaggattgccaggcttggatgctctt
ccgggagaaaggggtgtacaaggagaacccggggctcctggattcccgggtactaaagga
ttcagaggggatccaggtcaatctggatacaaaggcccccacggtgtctctggaagaaaa
ggggtgaaaggagatcaaggtgtcatgggggttcctggtcagattggaacaaaaggagat
agaggaccatcgggtccgaaaggaaacactggaataccaggctttcctggaccaacaggt
aaccgaggtcctgccccgttacctgttataactccaggtgagaggggtcctccaggagtg
cagggtatcatgggaccaaaggggaacagaggagaaccaggaccacaagggccacctgga
gattcagggttcatggggcccattggagagagaggcatgcctgggattagtggtactcct
ggagttcctggattccgtggagaacctggacatatgggtcacttcggtctgcagggcaag
gaagggtaccgtggtaaccctggtatccccgggtttcctggtatgcctggccgcagtgtc
agcgttggttacttgctagtgaaacacagtcagtcagaccagacccccatgtgtcccgtg
ggaatgtccaaactgtgggatggctacagcctactgtacttcgagggccaggaaaaggcc
cacaaccaagatcttggtttggcgggttcctgcctcccgaggttcagcactatgcccttc
ctctactgtaaccccggagacctttgctattacgccagcagaaacgataagtccttttgg
ctctctaccactgcgtctcttcccatgatgcccgttgaggaatcagaaatcaaaccatac
atcagtcgctgctccgtatgtgaagcgccatcagtggcgattgcagttcacagtcaagac
atcaccatcccacagtgtcctgcaggatggcgcagcctgtggattggctactccttcctc
atgcacacagcagcaggaaacgaaggcggtggccagtccttgtcgtctcccggttcctgc
ctggaggacttccgcacggctccattcattgagtgcaacggggccaaaggcacgtgtcac
tacttcgctaacaaatacagcttctggctgaccactacggagcaggagttccactctcag
ccggcatcacagacactcaaagcgggccagcttctttcacacatcagccgctgtcaggtc
tgcatgaagaacctgtga
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integrated database retrieval system
