Nothobranchius furzeri (turquoise killifish): 107389848
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Entry
107389848 CDS
T05163
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04510
Focal adhesion
nfu04512
ECM-receptor interaction
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107389848 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107389848 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
107389848 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nfu04147
]
107389848 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107389848 (col4a2)
Exosome [BR:
nfu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107389848 (col4a2)
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107389848 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107389848
NCBI-ProteinID:
XP_015821737
UniProt:
A0A1A8A3K5
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All DBs
Position
sgr14:complement(24552454..24626202)
Genome browser
AA seq
1665 aa
AA seq
DB search
MQTQRSRGQRNQRLLLLCLSLTILYPGVDAGGKKHSGPCGGRDCSGGCQCFPEKGARGLP
GPLGPQGFVGPVGRPGDPGIQGPKGQKGDQGIGGIVGPKGSMGMTGVPGFDGLDGIPGHP
GQAGPRGRPGADGCNGTHGESGLPGLPGFIGPPGTLGQQGRKGEKGDTLDIKVFMQRFRG
DPGTPGSSGIFGPMGERGWEGNRGPIGPKGPPGPPGPPGPKGTMTKYLKGVKGEPGDIGP
QGPPGNYTTQQRQPIPGQPGLKGDKGEIGALADNKGETGMMGNAGLRGDSGRDGLTGLRG
DPGEPGPTGRDGTKGVRGDPGELISSGSWFTPDGPPGPPGETGPQGERGPIGDQGFPGPP
GPPASDSQQQQVWDFFGPFGFTGDKGDKGQRGERGWPAVFAGPPGIDGRVGPIGPPGPKA
SLEVLFAGDPGWRGQPGRGGLKGQKGDHGQCECKLGNFQRGLPGPAGDPGDAGIIGEFGR
EGDLGDTGPRGQDGLPGSPGTNGLQGPKGRKGNTTVATQKGLPGDPGEAGKDGPAGVPGS
PGPDGLSGFPGNRGLPGEGPRGQHGDKGYPGRPGAPGAAGLRGVPGQDVTGIKGQRGLPG
DDGISGYVGVPGTPGAPGGCSPTGEGGQVDVTGPCQPVPGPPGLPGVPGVSGPPGAQGLP
GLKGAVGVAGAKGEKGEQGEQGTGGSSGPPGFPGPRGDHGVPGRKGSIGVPGFPGHSGRY
GVQGEKGSHGEVLGASPGSQGDPGLPGDQGEKGPIGNPGNPGYSGMGGMPGMIGFKGEKG
SPGLIGEEGRPGPAGTHGFPGDPGRVGLPGPFGETGQPGITGDRGTQGDPGPPGPTGLKG
TPGEHGDFGATGEPGLPGDPGQPGGSGRPGHPGLKGSKGSHGMSGFEGMMGNPGQKGLGG
LKGEAGVSGEVGLKGLLGKQGAKGERGLTGPRGAIAVQMLVNVKGAKGDHGHQGMPGFTG
PRGSKGVYGVPGFPGSDGLPGEPSKEKGQRGDPGAQGLPGFKGMPGITGNRGITGFEGMS
GNKGIKGSPGAYGALGEDGRKGAKGDKGLRIDLPGNPGLRGEDGFAGEPGLKGLSGPTGD
MGPTGFDGIEGIKGTVGDPGLAGIPGSDGQKGTPGNQGQKGFPGIPGKEGQPGFPGFSGI
KGYPGLKGLYGLHGLKGHKGDQGTPGLEGFGRPGEPGHKGQKGEGGVHNDQPGFPGAVGS
KGYQGPQGDIGHPGQPGLPGLAGPDGTPDIPGQRGDPGFSGPTGHQGVPGSRGLPGLDAL
PGERGVQGEPGAPGFPGTKGFRGDPGQSGYKGPHGVSGRKGVKGDQGVMGVPGQIGTKGD
RGPSGPKGNTGIPGFPGPTGNRGPAPLPVITPGERGPPGVQGIMGPKGNRGEPGPQGPPG
DSGFMGPIGERGMPGISGTPGVPGFRGEPGHMGHFGLQGKEGYRGNPGIPGFPGMPGRSV
SVGYLLVKHSQSDQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRFSTMPF
LYCNPGDLCYYASRNDKSFWLSTTASLPMMPVEESEIKPYISRCSVCEAPSVAIAVHSQD
ITIPQCPAGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTAPFIECNGAKGTCH
YFANKYSFWLTTTEQEFHSQPASQTLKAGQLLSHISRCQVCMKNL
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgcagcgcagcagaggacagagaaatcagaggctgctgcttctgtgcctctct
ctcaccattctctaccccggagttgacgcaggtgggaagaagcacagtggcccgtgtgga
ggaagagactgcagcggaggctgtcaatgcttcccagagaagggtgccaggggtctacct
gggcctcttggtcctcagggctttgtgggtccagtgggtcgaccaggagatcctggtatt
cagggaccaaaggggcagaaaggtgaccaaggaattggtggcatcgtaggtcctaaaggc
agtatgggaatgaccggcgttccagggttcgatggactcgatggtattccgggccatccg
ggacaggccgggcccagaggaaggccaggagcagacggctgtaacgggactcatggtgaa
tcaggactacctggacttcccggcttcatcggaccacctggaactcttggacaacaagga
agaaagggggagaagggggacactctggacatcaaagtgttcatgcagcgcttcaggggc
gatccaggcacaccgggatccagtggaatatttgggccaatgggagaacgaggatgggaa
ggtaacagaggcccaataggaccaaagggtcctcctggtcctccaggtcccccagggcca
aagggcacaatgaccaaatatttaaagggagtcaaaggagaaccgggtgacatcggacca
caagggccgccaggaaactacacgactcagcagcgtcagccgatccctggacaacctgga
ttaaaaggtgacaaaggagaaataggagctctggctgacaacaaaggagaaactggtatg
atgggaaacgctggattgcgaggtgacagtggtagagatgggcttactggactgaggggc
gatcctggtgaaccaggaccgacaggcagagatggcactaagggagtcagaggtgatcca
ggagagttgatttcatcgggatcttggtttacacctgatggtccccctggaccccctggt
gagactggtccacaaggagagaggggtccaattggagaccagggttttcctggaccacct
ggacctcctgcttctgactcacaacaacagcaagtgtgggacttctttggaccgtttggc
tttactggagacaaaggagacaaaggtcaacgaggagaacgaggatggcctgctgtcttt
gcaggacccccaggaatcgatgggcgtgttgggccaataggaccgccaggaccgaaagca
tcgttggaagtgttgtttgctggagatccaggatggaggggacaacctggaaggggaggc
ttaaagggacagaaaggcgatcatggacaatgtgagtgcaagctcggaaacttccagcgt
ggtttgcctggtcctgctggcgatcccggggatgctgggataattggagagtttggtcgt
gagggtgatttgggagacacgggtcccagaggacaggatggacttcctggatctcctggt
accaatggccttcaaggaccaaaaggtcgaaaaggaaacacaactgttgccacacaaaaa
ggcctccctggtgaccctggagaagcaggaaaagatggtcccgcaggagtccccggttct
ccaggcccagacgggctttctggtttccctggcaaccgtggtttgccaggagaaggaccc
agagggcaacatggggacaaggggtacccagggcggcctggtgcaccaggtgcagccggg
cttaggggagtcccgggtcaagatgttacaggtatcaaaggacagcggggtttacctgga
gatgatggtatctccggctacgttggagttccaggcacacccggagctccaggcggctgt
agtccaacaggagaaggaggacaggtggatgtcacaggcccttgccaacctgttccagga
cctccaggtctccctggagttccaggggtcagtggaccaccaggtgcacaaggacttcct
ggactaaagggggcagttggtgtagctggagccaagggagaaaagggggagcagggggag
cagggcacaggtggcagttctggaccaccaggttttcctggtcctcgtggagatcatgga
gttcctggcagaaaaggttccataggagttcccggttttccaggtcattctggtcgatat
ggtgttcagggtgaaaagggtagtcatggtgaagtattaggagcatcacctggatcccag
ggtgatccaggactaccaggtgatcaaggtgaaaaaggcccaattggaaatccagggaat
ccaggctactcgggtatggggggcatgcctggtatgatcggctttaagggggagaaaggt
tccccaggcctgataggggaagagggacgacctgggccagcagggacacacggtttccct
ggggatccaggaagagtgggtctgcctgggccatttggtgaaactggccagccaggaatc
acaggggacagaggaacacaaggagatcctggtcctccaggtccaacaggattaaaaggg
acaccaggtgaacatggtgattttggtgccactggagagcccggcctaccaggtgaccca
gggcaaccaggtggaagtggacgaccaggacatccaggattgaagggaagcaaggggtct
cacggcatgtcaggatttgagggaatgatgggtaatccagggcagaagggtctaggtggg
cttaaaggagaagctggagtgagcggtgaagttggtctcaaaggacttttaggcaaacag
ggagcaaaaggtgagcgtggtctgacagggccacgtggggccattgctgttcaaatgctt
gtcaacgtgaagggagccaagggagaccacggacatcaaggcatgccagggttcactggg
ccaagaggttcaaaaggagtatatggtgtgccaggatttcctggatcagatggtcttcca
ggagaacccagcaaagagaaaggtcagcgaggtgatcccggagcacaggggttacccggc
ttcaaaggaatgccaggtataacaggaaacagaggaatcacgggcttcgagggaatgtct
ggcaacaagggaatcaaaggaagtcctggtgcctatggagcattaggtgaagatggaagg
aagggggccaaaggtgataaaggccttcgcatagaccttccaggaaaccctggactaaga
ggagaggatggatttgcaggggaaccaggtctgaagggattaagtggaccaactggggac
atgggtcctactggttttgatggcattgagggaataaagggaacagtgggtgatccagga
ctagcgggaattccaggctcagatggacagaaaggtactcctggtaatcaaggtcaaaag
ggtttccctggaattcctgggaaagagggacaaccgggcttccctggcttctctggaatc
aaaggttatcctggacttaagggtctctatgggctacatggtctaaagggtcacaaaggg
gaccaaggaacaccaggtttggagggttttggacgccctggggagccgggacataaaggg
caaaagggggagggcggagtccacaatgaccagccaggttttccaggtgcagtgggttct
aaaggttaccaggggcctcaaggtgacattggccatcctggacagccaggactcccagga
cttgcgggaccagatgggaccccagacataccaggacagagaggagatcctggattttca
ggaccaacaggacatcaaggtgttcctggttccagaggattgccaggcttggatgctctt
ccgggagaaaggggtgtacaaggagaacccggggctcctggattcccgggtactaaagga
ttcagaggggatccaggtcaatctggatacaaaggcccccacggtgtctctggaagaaaa
ggggtgaaaggagatcaaggtgtcatgggggttcctggtcagattggaacaaaaggagat
agaggaccatcgggtccgaaaggaaacactggaataccaggctttcctggaccaacaggt
aaccgaggtcctgccccgttacctgttataactccaggtgagaggggtcctccaggagtg
cagggtatcatgggaccaaaggggaacagaggagaaccaggaccacaagggccacctgga
gattcagggttcatggggcccattggagagagaggcatgcctgggattagtggtactcct
ggagttcctggattccgtggagaacctggacatatgggtcacttcggtctgcagggcaag
gaagggtaccgtggtaaccctggtatccccgggtttcctggtatgcctggccgcagtgtc
agcgttggttacttgctagtgaaacacagtcagtcagaccagacccccatgtgtcccgtg
ggaatgtccaaactgtgggatggctacagcctactgtacttcgagggccaggaaaaggcc
cacaaccaagatcttggtttggcgggttcctgcctcccgaggttcagcactatgcccttc
ctctactgtaaccccggagacctttgctattacgccagcagaaacgataagtccttttgg
ctctctaccactgcgtctcttcccatgatgcccgttgaggaatcagaaatcaaaccatac
atcagtcgctgctccgtatgtgaagcgccatcagtggcgattgcagttcacagtcaagac
atcaccatcccacagtgtcctgcaggatggcgcagcctgtggattggctactccttcctc
atgcacacagcagcaggaaacgaaggcggtggccagtccttgtcgtctcccggttcctgc
ctggaggacttccgcacggctccattcattgagtgcaacggggccaaaggcacgtgtcac
tacttcgctaacaaatacagcttctggctgaccactacggagcaggagttccactctcag
ccggcatcacagacactcaaagcgggccagcttctttcacacatcagccgctgtcaggtc
tgcatgaagaacctgtga
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integrated database retrieval system
