KEGG   Nothobranchius furzeri (turquoise killifish): 107389849
Entry
107389849         CDS       T05163                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
nfu  Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04382  Cornified envelope formation
nfu04510  Focal adhesion
nfu04512  ECM-receptor interaction
nfu04518  Integrin signaling
nfu04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:nfu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    107389849 (col4a1)
   04518 Integrin signaling
    107389849 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    107389849 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    107389849 (col4a1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    107389849 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:nfu04147]
    107389849 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:nfu00536]
    107389849 (col4a1)
Exosome [BR:nfu04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   107389849 (col4a1)
Glycosaminoglycan binding proteins [BR:nfu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   107389849 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 107389849
NCBI-ProteinID: XP_015821741
UniProt: A0A1A8URG4
LinkDB
Position
sgr14:24626290..24685377
AA seq 1637 aa
MPFTRGALLLLLAALSSNLDLTGAEGCGTSCGKCDCSGVKGAKGERGFPGLQGNMGFPGM
QGHEGPPGPMGPKGDLGSPGAPGLKGVRGPHGLPGMPGNPGLPGINGNDGPPGSPGIPGC
NGTKGERGRDGSPGFPGLQGPPGIPGYPGMKGDPGGVMGIIPTKGDRGLPGLPGLPGSSG
LQGPSGPAGPRGYPGPKGDIGLPGPPGEKGDKLSFVSAKGEKGDQGLRGPPGPPGLPQGV
EGQTTVLVPGPQGYPGPPGDKGEKGFCLPYQIGVKGELGPPGPRGKPGKDGQDGLKGERG
FPGAPGFPGSDGVKGERGPPGYGSGPPGPPGPRGSPGSPGQKGFIGPQGEAGPPGRHVEG
PRGEKGLKGEVGEKGDRGIDGEPLPGPPGKQGPIGPPGPPGPSIDPKECNVAKGAPGAPG
LPGLPGEDGQKGDRGDACITCEGSGPPGPQGIKGAQGPPGPAGSKGQKGNSGFPGEPGAP
GFPGTAGLMGAPGAVGDPGDIFIAPGYKGEKGLPGFPGLQGSQGLDGLPGRDGLPGLQGP
KGEPAKEGIKGDRGLDGDPGHSGPPGERGPPGLPGFSLPGDPGEKGSQGRPGTPGSPGPP
GVKGEPGVGVSTPGPQGVPGPRGETGVPGLQGDRGVPGNPGLPGFPGEKGQHGAPGIGLP
GPTGSKGVSGIPGNTGIPGEPGRPGQDGLPGKAGPPGQKGEPGRGLPGPKGTQGLQGVTG
FPGEKGNIGLPGVPGPEGPTGAPGPQGLKGDIGPPGRPGQTGQPGAPGKGLPGPPGAQGP
PGEPGPYGREGLKGEKGYPGLPGLDMPGPQGEKGSSGFQGVPGAKGLPGSPGLPGRDGQF
GSQGPKGEMGIMGTPGTPGYPGPTGTPGSPGLRGDPGITGPRGAVGETGPKGDRGEDGLP
GPPGNLTKVDMEHLKGQKGDVGDPGQRGDTGLKGHIGVQGDPGMPGSDGAPGTPGKPGDK
GSTGDPGEPGIIGQPGQKGSSGEMGIPGPVGPKGTKGDFGTPGHPGLRGADGVKGDRGLP
GEPGIGLPGQPGQKGQVGQPGFPGLRGDKGEQGQEGMPGKPGLQGLKGDKGSIGHSGQPG
RPGDKGYPGLPGSAGEPGQDGRPGEGGMQGPPGPRGDKGDPGEDGIPGSTGERGEPGSPG
VGLPGTPGVHGVKGDKGSPGLPGMSGQPGIPGTRGDKGLPGPEGLQGEPGEPGPQGISLE
GPKGERGETGPVGETGSPGEPGPVGVPGRDGLKGGKGDSGLPGFQGEMGRKGDPGFPGIS
GPPGLPGIDGQKGERGLQGVPGFPGTKGVVGDGGFKGELGDRGFPGEKGNEGPPGPPGSQ
IFIKGEAGFPGIQGFPGPQGPSGLPGQKGQQGMTGIPGPKGDHGLPGFNGQPGAKGEPGF
PGPQGPRGDSGPPGPDGVPGQVGPPGPASMEHGFLVTRHSQTVDIPSCPYGTRIIYDGYS
LLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPMPMS
MAPITGNSIKPFISRCVVCEAPAMVIAVHSQTIMIPPCPEGWNSLWIGYSFVMHTSAGAE
GSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDDDMFKKPVPTTLKA
GSLQTHISRCQVCMKRT
NT seq 4914 nt   +upstreamnt  +downstreamnt
atgccgtttacgcgcggcgcgctgttgctgctgctggcggctctctcctccaacttagac
ctgacaggggctgagggttgtggaacttcttgtggaaaatgtgactgcagcggtgtcaaa
ggagcaaagggtgagcgtggatttcctggtcttcaaggtaacatgggattcccagggatg
cagggacatgagggaccacctgggccaatgggcccaaagggagacctaggttcacctgga
gctcctggactgaaaggagtgcgagggcctcatggtctgccaggtatgcccggaaaccca
ggactcccaggcatcaacggaaacgatggtccaccgggttcgcctggtatcccaggatgc
aacgggaccaaaggtgaaagaggaagagatggctctcctggttttcctggacttcaaggt
cctcctggaataccaggatatcccggaatgaaaggagaccctggtggtgtgatggggatc
attcccactaaaggggaccgaggacttcctggcctacctggattacctggatcctctggt
ctccagggacctagtggacctgcaggacccagaggatatccaggacccaaaggagacatt
gggctccccggtccgccaggagaaaagggtgacaagttgtcctttgtgagtgcaaaggga
gaaaagggtgaccaaggacttcgaggtccacctggtcccccaggacttcctcagggagta
gaaggacagaccacagtgctcgtacctggaccacaggggtacccaggacctccaggggat
aaaggagagaaaggtttttgcttgccataccaaattggggtcaaaggtgaacttggccca
cctggaccaagaggcaaacctggaaaagatggtcaggatggacttaagggagagagaggt
ttccccggagctcctggatttccgggttcagatggtgtaaaaggagaaagaggacctcct
ggttatggcagcggtccacccggtcctcccggcccccgcggctccccaggttcaccagga
caaaaaggtttcattggtcctcagggagaggctggtccaccaggccgccacgtcgaagga
cctcgtggcgagaagggtctaaaaggagaagtgggggagaagggtgaccgaggcattgat
ggggagcctcttcctggaccaccaggaaaacagggacccatcggaccacctgggccaccg
ggaccatccattgaccctaaagaatgtaacgttgctaagggagctcctggcgcacctgga
cttccagggttaccaggagaagatgggcaaaaaggtgaccgaggtgatgcctgtatcact
tgtgagggctcaggtccgcctggaccccagggcattaaaggagcgcaaggtcctcctggt
ccagctggcagcaaaggacaaaagggtaattctggctttcctggagaacctggagcaccc
ggatttccaggaactgctggactcatgggagcacccggcgctgtaggagacccaggagac
attttcatagctccgggttataagggggagaaaggtcttccaggctttcctggtttacaa
ggaagtcaaggactggatggactgccaggaagagatggcctcccgggtctacagggtcct
aaaggagaacctgccaaagaaggcattaaaggtgaccgtggactagatggagatcccgga
cattcgggaccaccaggagaaaggggtcctcctggtttaccagggtttagccttccagga
gatccgggggagaaaggcagtcaggggagaccaggaactccaggatctcctggtccacct
ggagtaaaaggtgagccgggtgttggtgttagtactcctggacctcagggggtacctgga
ccacgaggagaaacgggtgtacctgggctccaaggtgacagaggtgtcccaggaaaccct
ggcttgccaggtttccctggagagaagggtcaacatggagctccaggaattggattacct
ggcccaacaggttctaaaggtgttagtggaattcctggaaacactggaatccctggagag
ccaggaagaccaggacaggatggtttacctgggaaagctggtccacctggacaaaaaggt
gaacctggacgaggtcttccaggcccaaaaggtacacaaggcctccagggagttacaggt
ttcccaggagagaaaggtaacattggactccctggtgttcctggaccagaaggaccgaca
ggagcaccaggacctcagggtcttaaaggtgacattggacctccagggcgccctggacaa
accggtcaaccaggtgctcctggaaaagggttgcctggacctcctggagcacaaggacca
cctggagagcccggaccttatggtagggaaggtttgaagggagaaaaaggttatccagga
cttcctggtctcgatatgcccgggcctcaaggagagaaaggaagctcggggttccaagga
gtgccaggtgctaaaggactgccagggtcaccaggcttaccaggcagagatggacaattt
gggagccaaggtccaaagggtgaaatgggcatcatgggaacaccaggaaccccaggatat
cctggaccaacaggaacgcctggatctcctggtttgagaggtgatcctggtattaccgga
ccaagaggagctgttggggaaacaggccctaaaggtgacaggggagaagacggtcttcca
ggacctcccgggaatttgaccaaggttgatatggaacatttaaaggggcaaaaaggagat
gttggagacccaggccaacgtggtgacactggactgaaaggccacattggagtccaggga
gatcctgggatgcctggcagtgatggggcaccaggaacacctggaaaaccaggtgacaaa
ggaagtactggtgatcctggagagcctggcatcatcggacaacctgggcagaaaggcagc
tcgggagagatgggaataccaggtccggttggtcctaaaggtacaaaaggagattttggt
acaccgggtcatcctggattaagaggcgccgatggtgttaagggtgacaggggactacct
ggtgaaccaggcatcggtcttcctggacaaccaggacaaaagggtcaggttggccagcca
gggtttccagggttacgtggagacaagggtgagcagggtcaagagggaatgccaggtaaa
cctggacttcaaggactcaaaggagacaaaggaagcatcgggcactcaggtcagccaggt
agacccggagacaaaggctatcctggactcccgggatctgcaggggagccgggtcaagat
ggccgccctggtgaaggtggcatgcagggacctcctggtcctcgtggagacaagggtgat
cctggagaagatggcatccccggatccactggcgagagaggagaaccaggttctcctggt
gtgggtctgcctggaacacctggagtacatggtgtcaaaggtgataaaggtagtccaggc
ttacctggcatgtcaggccaaccaggtattcctggtaccagaggagataagggtcttcca
ggtccagaaggactccagggggagccaggagagccaggtcctcaaggcatttctctagaa
gggcctaaaggagagaggggagagacagggccagttggtgaaacaggttccccaggagaa
ccaggacctgttggtgtgcctggcagagatggcctcaaaggaggcaaaggtgattctggt
ctgcctggttttcagggagagatgggacgcaagggtgaccctggatttcctggaatttct
ggtccacctggtctcccaggtattgatggccagaagggagaaagaggattacagggtgtt
cctggattcccaggcacaaagggtgttgttggcgatggtggattcaaaggagaattgggc
gacagaggattccctggagaaaaaggtaacgaaggcccccctggtccgcctggctctcag
atctttataaaaggagaagctggattcccagggattcagggctttccgggcccccagggg
ccatctggtctccctgggcagaaaggacagcaaggtatgacaggtattccaggtccaaaa
ggtgaccatggtctccctggatttaacggtcagccaggtgccaaaggagagcctggtttt
cctggtccacaagggcccagaggagatagtggtcccccaggacctgatggggttccaggt
caagttggcccacctggtccagcgtcgatggaacatggcttcctggtgacacgccacagc
cagacggtggacattccttcatgtccgtacgggacgagaatcatttacgatggctattct
ttactttatgttcaaggaaacgaacgctcccatggacaagacttaggtacggcaggaagc
tgtttgagaaagttcagccccatgcccttcctgttctgtaacatcaacaatgtgtgcaac
tttgcatcccgtaatgattattcctactggctcacctcaccggagccgatgcccatgagc
atggcacctatcaccgggaatagcatcaaacccttcatcagcaggtgtgttgtgtgtgaa
gctccagcgatggtgatagctgttcacagtcagaccatcatgatcccaccatgtcctgaa
ggctggaactctctctggattggctactcctttgtaatgcacacaagtgcaggtgctgag
ggttcgggccaggccttggcctctcctgggtcctgtctggaggaattccgcagtgctccg
ttcattgagtgtcatggccgaggaacttgcaactactacgccaactcctacagcttctgg
ctcgccaccattgaagacgatgatatgttcaagaaacctgttccgacaacgctaaaagct
ggcagtctccaaacacacataagccgttgtcaggtgtgcatgaagaggacataa

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