Nothobranchius furzeri (turquoise killifish): 107389849
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Entry
107389849 CDS
T05163
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04510
Focal adhesion
nfu04512
ECM-receptor interaction
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107389849 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107389849 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
107389849 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nfu04147
]
107389849 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107389849 (col4a1)
Exosome [BR:
nfu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107389849 (col4a1)
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107389849 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107389849
NCBI-ProteinID:
XP_015821741
UniProt:
A0A1A8URG4
LinkDB
All DBs
Position
sgr14:24626290..24685377
Genome browser
AA seq
1637 aa
AA seq
DB search
MPFTRGALLLLLAALSSNLDLTGAEGCGTSCGKCDCSGVKGAKGERGFPGLQGNMGFPGM
QGHEGPPGPMGPKGDLGSPGAPGLKGVRGPHGLPGMPGNPGLPGINGNDGPPGSPGIPGC
NGTKGERGRDGSPGFPGLQGPPGIPGYPGMKGDPGGVMGIIPTKGDRGLPGLPGLPGSSG
LQGPSGPAGPRGYPGPKGDIGLPGPPGEKGDKLSFVSAKGEKGDQGLRGPPGPPGLPQGV
EGQTTVLVPGPQGYPGPPGDKGEKGFCLPYQIGVKGELGPPGPRGKPGKDGQDGLKGERG
FPGAPGFPGSDGVKGERGPPGYGSGPPGPPGPRGSPGSPGQKGFIGPQGEAGPPGRHVEG
PRGEKGLKGEVGEKGDRGIDGEPLPGPPGKQGPIGPPGPPGPSIDPKECNVAKGAPGAPG
LPGLPGEDGQKGDRGDACITCEGSGPPGPQGIKGAQGPPGPAGSKGQKGNSGFPGEPGAP
GFPGTAGLMGAPGAVGDPGDIFIAPGYKGEKGLPGFPGLQGSQGLDGLPGRDGLPGLQGP
KGEPAKEGIKGDRGLDGDPGHSGPPGERGPPGLPGFSLPGDPGEKGSQGRPGTPGSPGPP
GVKGEPGVGVSTPGPQGVPGPRGETGVPGLQGDRGVPGNPGLPGFPGEKGQHGAPGIGLP
GPTGSKGVSGIPGNTGIPGEPGRPGQDGLPGKAGPPGQKGEPGRGLPGPKGTQGLQGVTG
FPGEKGNIGLPGVPGPEGPTGAPGPQGLKGDIGPPGRPGQTGQPGAPGKGLPGPPGAQGP
PGEPGPYGREGLKGEKGYPGLPGLDMPGPQGEKGSSGFQGVPGAKGLPGSPGLPGRDGQF
GSQGPKGEMGIMGTPGTPGYPGPTGTPGSPGLRGDPGITGPRGAVGETGPKGDRGEDGLP
GPPGNLTKVDMEHLKGQKGDVGDPGQRGDTGLKGHIGVQGDPGMPGSDGAPGTPGKPGDK
GSTGDPGEPGIIGQPGQKGSSGEMGIPGPVGPKGTKGDFGTPGHPGLRGADGVKGDRGLP
GEPGIGLPGQPGQKGQVGQPGFPGLRGDKGEQGQEGMPGKPGLQGLKGDKGSIGHSGQPG
RPGDKGYPGLPGSAGEPGQDGRPGEGGMQGPPGPRGDKGDPGEDGIPGSTGERGEPGSPG
VGLPGTPGVHGVKGDKGSPGLPGMSGQPGIPGTRGDKGLPGPEGLQGEPGEPGPQGISLE
GPKGERGETGPVGETGSPGEPGPVGVPGRDGLKGGKGDSGLPGFQGEMGRKGDPGFPGIS
GPPGLPGIDGQKGERGLQGVPGFPGTKGVVGDGGFKGELGDRGFPGEKGNEGPPGPPGSQ
IFIKGEAGFPGIQGFPGPQGPSGLPGQKGQQGMTGIPGPKGDHGLPGFNGQPGAKGEPGF
PGPQGPRGDSGPPGPDGVPGQVGPPGPASMEHGFLVTRHSQTVDIPSCPYGTRIIYDGYS
LLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPMPMS
MAPITGNSIKPFISRCVVCEAPAMVIAVHSQTIMIPPCPEGWNSLWIGYSFVMHTSAGAE
GSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDDDMFKKPVPTTLKA
GSLQTHISRCQVCMKRT
NT seq
4914 nt
NT seq
+upstream
nt +downstream
nt
atgccgtttacgcgcggcgcgctgttgctgctgctggcggctctctcctccaacttagac
ctgacaggggctgagggttgtggaacttcttgtggaaaatgtgactgcagcggtgtcaaa
ggagcaaagggtgagcgtggatttcctggtcttcaaggtaacatgggattcccagggatg
cagggacatgagggaccacctgggccaatgggcccaaagggagacctaggttcacctgga
gctcctggactgaaaggagtgcgagggcctcatggtctgccaggtatgcccggaaaccca
ggactcccaggcatcaacggaaacgatggtccaccgggttcgcctggtatcccaggatgc
aacgggaccaaaggtgaaagaggaagagatggctctcctggttttcctggacttcaaggt
cctcctggaataccaggatatcccggaatgaaaggagaccctggtggtgtgatggggatc
attcccactaaaggggaccgaggacttcctggcctacctggattacctggatcctctggt
ctccagggacctagtggacctgcaggacccagaggatatccaggacccaaaggagacatt
gggctccccggtccgccaggagaaaagggtgacaagttgtcctttgtgagtgcaaaggga
gaaaagggtgaccaaggacttcgaggtccacctggtcccccaggacttcctcagggagta
gaaggacagaccacagtgctcgtacctggaccacaggggtacccaggacctccaggggat
aaaggagagaaaggtttttgcttgccataccaaattggggtcaaaggtgaacttggccca
cctggaccaagaggcaaacctggaaaagatggtcaggatggacttaagggagagagaggt
ttccccggagctcctggatttccgggttcagatggtgtaaaaggagaaagaggacctcct
ggttatggcagcggtccacccggtcctcccggcccccgcggctccccaggttcaccagga
caaaaaggtttcattggtcctcagggagaggctggtccaccaggccgccacgtcgaagga
cctcgtggcgagaagggtctaaaaggagaagtgggggagaagggtgaccgaggcattgat
ggggagcctcttcctggaccaccaggaaaacagggacccatcggaccacctgggccaccg
ggaccatccattgaccctaaagaatgtaacgttgctaagggagctcctggcgcacctgga
cttccagggttaccaggagaagatgggcaaaaaggtgaccgaggtgatgcctgtatcact
tgtgagggctcaggtccgcctggaccccagggcattaaaggagcgcaaggtcctcctggt
ccagctggcagcaaaggacaaaagggtaattctggctttcctggagaacctggagcaccc
ggatttccaggaactgctggactcatgggagcacccggcgctgtaggagacccaggagac
attttcatagctccgggttataagggggagaaaggtcttccaggctttcctggtttacaa
ggaagtcaaggactggatggactgccaggaagagatggcctcccgggtctacagggtcct
aaaggagaacctgccaaagaaggcattaaaggtgaccgtggactagatggagatcccgga
cattcgggaccaccaggagaaaggggtcctcctggtttaccagggtttagccttccagga
gatccgggggagaaaggcagtcaggggagaccaggaactccaggatctcctggtccacct
ggagtaaaaggtgagccgggtgttggtgttagtactcctggacctcagggggtacctgga
ccacgaggagaaacgggtgtacctgggctccaaggtgacagaggtgtcccaggaaaccct
ggcttgccaggtttccctggagagaagggtcaacatggagctccaggaattggattacct
ggcccaacaggttctaaaggtgttagtggaattcctggaaacactggaatccctggagag
ccaggaagaccaggacaggatggtttacctgggaaagctggtccacctggacaaaaaggt
gaacctggacgaggtcttccaggcccaaaaggtacacaaggcctccagggagttacaggt
ttcccaggagagaaaggtaacattggactccctggtgttcctggaccagaaggaccgaca
ggagcaccaggacctcagggtcttaaaggtgacattggacctccagggcgccctggacaa
accggtcaaccaggtgctcctggaaaagggttgcctggacctcctggagcacaaggacca
cctggagagcccggaccttatggtagggaaggtttgaagggagaaaaaggttatccagga
cttcctggtctcgatatgcccgggcctcaaggagagaaaggaagctcggggttccaagga
gtgccaggtgctaaaggactgccagggtcaccaggcttaccaggcagagatggacaattt
gggagccaaggtccaaagggtgaaatgggcatcatgggaacaccaggaaccccaggatat
cctggaccaacaggaacgcctggatctcctggtttgagaggtgatcctggtattaccgga
ccaagaggagctgttggggaaacaggccctaaaggtgacaggggagaagacggtcttcca
ggacctcccgggaatttgaccaaggttgatatggaacatttaaaggggcaaaaaggagat
gttggagacccaggccaacgtggtgacactggactgaaaggccacattggagtccaggga
gatcctgggatgcctggcagtgatggggcaccaggaacacctggaaaaccaggtgacaaa
ggaagtactggtgatcctggagagcctggcatcatcggacaacctgggcagaaaggcagc
tcgggagagatgggaataccaggtccggttggtcctaaaggtacaaaaggagattttggt
acaccgggtcatcctggattaagaggcgccgatggtgttaagggtgacaggggactacct
ggtgaaccaggcatcggtcttcctggacaaccaggacaaaagggtcaggttggccagcca
gggtttccagggttacgtggagacaagggtgagcagggtcaagagggaatgccaggtaaa
cctggacttcaaggactcaaaggagacaaaggaagcatcgggcactcaggtcagccaggt
agacccggagacaaaggctatcctggactcccgggatctgcaggggagccgggtcaagat
ggccgccctggtgaaggtggcatgcagggacctcctggtcctcgtggagacaagggtgat
cctggagaagatggcatccccggatccactggcgagagaggagaaccaggttctcctggt
gtgggtctgcctggaacacctggagtacatggtgtcaaaggtgataaaggtagtccaggc
ttacctggcatgtcaggccaaccaggtattcctggtaccagaggagataagggtcttcca
ggtccagaaggactccagggggagccaggagagccaggtcctcaaggcatttctctagaa
gggcctaaaggagagaggggagagacagggccagttggtgaaacaggttccccaggagaa
ccaggacctgttggtgtgcctggcagagatggcctcaaaggaggcaaaggtgattctggt
ctgcctggttttcagggagagatgggacgcaagggtgaccctggatttcctggaatttct
ggtccacctggtctcccaggtattgatggccagaagggagaaagaggattacagggtgtt
cctggattcccaggcacaaagggtgttgttggcgatggtggattcaaaggagaattgggc
gacagaggattccctggagaaaaaggtaacgaaggcccccctggtccgcctggctctcag
atctttataaaaggagaagctggattcccagggattcagggctttccgggcccccagggg
ccatctggtctccctgggcagaaaggacagcaaggtatgacaggtattccaggtccaaaa
ggtgaccatggtctccctggatttaacggtcagccaggtgccaaaggagagcctggtttt
cctggtccacaagggcccagaggagatagtggtcccccaggacctgatggggttccaggt
caagttggcccacctggtccagcgtcgatggaacatggcttcctggtgacacgccacagc
cagacggtggacattccttcatgtccgtacgggacgagaatcatttacgatggctattct
ttactttatgttcaaggaaacgaacgctcccatggacaagacttaggtacggcaggaagc
tgtttgagaaagttcagccccatgcccttcctgttctgtaacatcaacaatgtgtgcaac
tttgcatcccgtaatgattattcctactggctcacctcaccggagccgatgcccatgagc
atggcacctatcaccgggaatagcatcaaacccttcatcagcaggtgtgttgtgtgtgaa
gctccagcgatggtgatagctgttcacagtcagaccatcatgatcccaccatgtcctgaa
ggctggaactctctctggattggctactcctttgtaatgcacacaagtgcaggtgctgag
ggttcgggccaggccttggcctctcctgggtcctgtctggaggaattccgcagtgctccg
ttcattgagtgtcatggccgaggaacttgcaactactacgccaactcctacagcttctgg
ctcgccaccattgaagacgatgatatgttcaagaaacctgttccgacaacgctaaaagct
ggcagtctccaaacacacataagccgttgtcaggtgtgcatgaagaggacataa
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integrated database retrieval system
