Nothobranchius furzeri (turquoise killifish): 107389927
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Entry
107389927 CDS
T05163
Symbol
palb2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03440
Homologous recombination
nfu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107389927 (palb2)
03460 Fanconi anemia pathway
107389927 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfu03400
]
107389927 (palb2)
DNA repair and recombination proteins [BR:
nfu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
107389927 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
107389927 (palb2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
107389927
NCBI-ProteinID:
XP_015821834
UniProt:
A0A1A8A8C7
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All DBs
Position
sgr02:complement(10284799..10292280)
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AA seq
1249 aa
AA seq
DB search
MDMNAGDSLNSVELLKNTLHCDDKEKLRRKLAQLQKEYLKTAQRLQRAERLEAVQKHIKR
KLQDQKEPEVTCSSSLTTNQNNSTVQDFDTLRRNQVLGFTLPSDAAGPQTPDLRDDAARG
RRPSPTLRLRSRRSRLRLERRSTAEGGASNDSSQQGQGSGEGMGSVKPGEEQGMVESKAD
AVNESEELFSNTKSESPSLLLPHWNAQGHSETGNIFGKEHQRGHQEGKETDLDIAKPFLI
SEGRELLVTQAGDAEIKTGDDRSSCNELGKCFVEENRSESCEINEGGVIKSETNPKSSLE
TKEERNGMRREEKTDSLLDSCTLVEGLLFPAEYYIRTTRRMTVSQSQPDVQLILLSQLNN
GRQRRSRGRGRGRNRHSHSGESSDQHTRTDFFSPETLSSFIDPLGSPHASAECGQSSSGV
SDSITASQVDSESSFLPTVTTVRPLRGRRRGRGRGRGRPRTPRSHQHIREQTSADPQPSD
IQVASSQSNGGVNTCFSSVEADPKPAGSTFLSNSHGAPTSCSAHHLEKVLPIFVKSSSST
SRPPQMNKGTPSWESLFLPSSSSPAQTSLLSPLSPFPVSLVSALKSLDIHQDFHLPDDQF
ASLKLHKLRRIAVESGVEHFSTPLRNTRSSIRRSHPECSMSDPSVMLPLPLSLTPTVLSS
PRPDDAQLLHIRDLSVEQVLTNESISKSSVHELLGKNVAETDEEQQLCAETLDKSTKSVL
AVGEETEGDAKEDRPSEDHTCGRDQSEHRDVADSVYSDYCPKETQEKPSNIRFPLESHKE
TKAPQESPASEKYLFITPHLPSPTPASSPALPSLGITPRLAAGGPPLSLPPPCSPSTTAL
SLPALSPFPSITSLSPSLPPLSPCRQIQDLSAPPAGSDQVIEPAAHPTPSSIQRHESDEQ
ETNRSAEEHGMRCMHTLKAAAGGSLVDVCCFPGSSDGLFVAAAGAWAVCLWSWTPVSDWS
LKHTWTFSKPVISVFTVQDAAELVCVTLGQLEIREVRLLLCSSLTQMLICDGVMQVVVGV
YKSRVVTSSHAATGSTLQVFTPSDSVSSWSSQPLVSPGVCVGALAPVDGLPDALIGSDEG
GHIFIWNLNSGQLLSRVLLSHGLSQASCLRGYAHCGVLFVLLQHQFLSSLNDEKEATIEE
QRFLTEDTRTAMFSLVGINPLNGKSILATRLCPPEAWSGRLCEADVFHSSVVGLSQRGSA
CVWELGKRGTSRMLEAPEGEDWQLARWGGGGDMLVMGHHNGDVSVHQCW
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atggatatgaatgcaggtgattctctgaacagcgtggagctgctgaagaacacattacac
tgtgatgacaaggagaagcttcgtagaaagttggcacagttacagaaagaatacctcaag
acagcccagagactacagcgtgctgagcgtttagaagctgtgcagaaacacattaaacgt
aaacttcaagatcagaaagaaccagaggttacctgcagctcttcactgacgacaaaccaa
aacaactccacagtccaagattttgacactttaaggaggaatcaggtgcttgggtttaca
ctcccctctgatgctgctggtccacagaccccagatctcagagatgatgctgctaggggt
cgcagacccagtcccaccctccgtctccgatcacgccgcagtcgccttcgactggaaagg
aggagcaccgctgagggtggcgcgagcaacgacagcagccaacagggacaggggtcaggt
gaagggatgggaagtgtaaaaccaggagaagaacaagggatggttgagtcaaaagcagat
gcagtcaatgaaagtgaagagttgttttctaatacaaaatctgagtccccctcgctgctg
ctccctcactggaatgcacaaggacactctgaaactggaaacatatttgggaaggagcat
caaaggggtcatcaagaaggaaaagaaaccgacttggatattgctaaaccttttttgatc
agtgaaggaagagaactacttgtcacccaagccggggatgcagagataaagactggagac
gacagatccagttgtaatgagttagggaaatgtttcgttgaggagaacagatctgaaagc
tgtgaaataaatgaaggtggggtcatcaaaagtgaaacaaatcctaaaagttcactggaa
acaaaagaagagaggaatgggatgagacgagaggagaaaacggacagcctccttgactcc
tgcacgttagtggagggactactttttccggcggaatactacattcgaaccacaaggcgt
atgacggtttcccagagccagcctgatgtgcagctcatcctactttctcagctgaacaac
ggacggcagcgcaggagtcgaggacgtggcagaggaaggaacagacactcacactctgga
gaaagttcagatcaacacactcggactgatttcttctctcctgaaactttgtcctcattc
atagaccctcttggctcgcctcatgcatctgcagagtgtggtcagagttccagtggtgtt
tcagattctattacagcttcccaggtggactcagaatcttcttttttaccaacagtcacc
acagttcgtccattacgaggaaggagaagggggagaggcagggggagagggagacctcgg
accccacgttcccatcagcatattagggaacagacatcagcagatcctcaaccctcagat
attcaagtagcttcgtctcagtcaaacggcggggtgaacacctgcttcagctcagtggaa
gctgatcccaagccagctggaagcacgtttttatctaacagtcatggagctccaaccagc
tgttcagctcatcatctggagaaggtccttcctatctttgtgaagagcagcagcagtacc
agcagacccccacagatgaacaaaggtacaccaagctgggagtccctcttcctgccctcc
tcttcctcaccagctcagacatctctgctttctcctctctccccgtttccagtctcactg
gtcagtgccctgaaaagtttagacatccaccaggatttccatctcccagatgatcagttt
gcctccctgaagctgcacaagctccgccggattgccgtggagtcgggagtcgaacatttt
tcaacaccgttgcgcaacactcgcagcagcatccgtcgctcccacccggagtgcagcatg
agtgacccgtcggtaatgcttcctctccctctgagcctcacgccgactgtactaagctca
ccccgtcctgatgacgcacagctgctgcacattcgggatttgtcagtagaacaggtcctt
acaaatgaatcgatcagcaagagctcggttcatgagctgttgggaaaaaatgttgcagaa
acagatgaggagcagcagctttgtgcagaaactctcgacaaatcgacaaaatctgtttta
gctgttggagaggaaaccgaaggcgacgctaaagaggatcgaccttcagaagatcacacg
tgtggacgtgaccaatcagaacaccgagatgttgctgactctgtttacagtgattactgt
ccaaaggaaactcaagagaagccttcaaacatccgctttcctttggagtcacataaggag
acaaaagctccacaggagtcacccgcttcagaaaagtaccttttcatcacccctcacctg
ccctcacccactccagcatccagccctgcactcccctcgttagggataactcctcgtctt
gctgcaggtggccctcctctcagcctgccccctccttgcagcccatccacaacggctctc
tctcttccagctctgtccccctttccgtctatcacctccctctcccctagcctgcctcct
ctctccccttgtagacaaatccaggatttatctgcgccgcctgctgggagcgatcaggtt
attgaacctgccgcccatccgactccgtccagcattcagcggcatgaatcagatgagcag
gagacaaatagatctgcagaggagcatgggatgagatgcatgcacacgctgaaggctgca
gcaggaggctctctggtggatgtgtgctgttttcctggatcatcagatggattgtttgtg
gcagcagctggagcgtgggccgtgtgtctctggagctggactccagtttctgattggagc
ctaaaacacacctggaccttcagcaagcctgtgatcagcgtgtttaccgtccaagatgca
gccgagctcgtgtgtgtgacactcggtcagctggaaatcagagaagtgagactgctgctg
tgctccagcctcactcagatgctgatctgtgatggagtcatgcaggtggttgtaggtgtg
tacaagtccagagtggttacctcctcacacgctgccactggctccaccctgcaggtgttt
acgccgtcggatagtgtcagctcgtggagttctcagcctctggtgtctcctggtgtttgt
gtcggtgctcttgctccagtggacgggcttcctgatgctctgattggctcggatgaaggt
ggacacatcttcatctggaatttaaatagtggacagctgctgtccagagtcctgctcagc
cacggcttatctcaggcgtcctgcctcagaggttacgcccactgtggggtgttgtttgtg
ctgctgcaacatcagtttctaagctctctaaacgatgaaaaagaagcaacgattgaagag
cagaggtttttgacggaggacacaaggacggccatgttttctttggtgggcatcaaccct
ctgaatggaaagtccatcctggctactcggctgtgtccacccgaagcctggtcgggcagg
ttgtgtgaagctgacgttttccactccagtgtagtgggcctgagtcagcgcgggagtgct
tgtgtctgggagctcggaaaacgcggaacatctcgaatgctagaggctccagaaggtgaa
gactggcagctggctcgttgggggggtggaggagacatgctggtgatgggacatcataac
ggagacgtttctgtgcatcagtgctggtga
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integrated database retrieval system
