Nothobranchius furzeri (turquoise killifish): 107390028
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Entry
107390028 CDS
T05163
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107390028 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107390028 (parn)
Enzymes [BR:
nfu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107390028 (parn)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107390028 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_Thc1
R3H
NCBP3
Motif
Other DBs
NCBI-GeneID:
107390028
NCBI-ProteinID:
XP_015821992
UniProt:
A0A1A7ZQV8
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All DBs
Position
sgr02:complement(9443541..9451876)
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AA seq
681 aa
AA seq
DB search
MEITRRNFKDCLSTVYSAIDEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLMFQFGLCTFKYDQTKSKYITKTFNFYIFPKPFNRTSPDIKFICQSSSIDFLASQG
FDFNKVFCHGIPYLNQDEEACLREQTEERRNQHANGLGTPSFISPSSKTPANVPDEQKDF
INKVVEKVELLFSADEKTLNLEPCTGFQRKLIYQMLSWKFPKGLHVETLETDKKERYIQI
SKVDDKERKKREQQKLEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFY
CSLPEDLQDFKEVTMCVFPRLLDTKLMASTQPFKELINNTSLAELEKQVKESPFKPPQVE
AAEGFPSYDTAQEQLHEAGYDAYITGLCFISMANHLGSFLTPPKAYISAKSKLIEPFVNK
LFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQTDQVQIAMNTSRYAESYRIQTYAEYIQGKQQKEKLGQTTKSWGEDGWMKPHFSS
STTSAGFVYPRRKRSISPVQGDLGTEAAPVPDPWNNYSFPDDTVSKKIKFDELSGQANVD
AVESKTSEGWLKITESSNSPDLSHVTDEKSPEGTDPDKCVDGTGTWHQTPTAPTRKGQKN
KKKKTEATESTTSLFDVPEVW
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggagattactcgcagaaattttaaagactgtttaagcacagtatacagcgcgatagac
gaagcggactttcttgccatcgatggagaattttcagggataagcgacggtcctaatgtt
agtgcactaaccaacgggcttgacacaccagaggaaagatacacaaagctaaaaaagcat
tctatggactttcttatgttccagtttggattgtgtacatttaagtatgaccagacaaag
tcaaagtatatcacaaagacttttaacttttatatattccccaaaccatttaataggacc
tctccagacatcaaattcatctgtcaaagttccagcatcgacttcctcgccagtcaggga
tttgatttcaacaaggttttctgtcacggaatcccgtatctaaatcaagatgaggaagct
tgcctgcgagagcagacggaggaaaggaggaatcagcatgctaacggtttagggacgccg
tcctttatctcgccatcctcgaaaactcctgcaaatgtacctgatgaacagaaggacttc
attaacaaagtggtggagaaggttgagttgctcttcagtgccgacgagaagactttaaac
ttggagccgtgcactggattccagaggaaactgatttaccaaatgctgagctggaagttt
cccaaaggtctccatgtggaaacattagaaacagacaagaaggagcgatacattcagatt
agtaaagttgacgacaaggagaggaagaagagggaacagcagaaactggagagggagcag
gaggagctaaatgatgctgtgggcttttccagagtgatccatgccatttctaaatctggt
aaacttgtggttggacacaacatgcttttggatgtgatgcacacaatccaccagttctac
tgctctctgccagaggatcttcaagattttaaagaagttacaatgtgtgttttcccaaga
cttttagacacaaagctgatggcgtccactcagccttttaaggagttgatcaataacaca
tctctggctgagctggagaaacaagtcaaagagagccccttcaagccaccacaagttgaa
gctgcagagggtttccccagttatgacacagcccaggagcagctccacgaggcgggatac
gacgcctacattaccggtctgtgtttcatctccatggccaaccatctgggttcattcttg
actccacccaaggcttacatctctgccaagtccaaactcattgaaccatttgttaacaag
ctattcctgatgagaatcattgacataccctacctcaacatcacaggaccagatttgcaa
cccaaaagagaccacgtcctttatgtcaccttccctaaagagtggaagacgagtgacctc
taccagctcttcagtgcctttggtaacatccaggtgtcttggatagatgacacctcagcc
ttcgtgtccctcagtcagacggaccaggtgcagatagctatgaacaccagccgctatgca
gagagctacaggatccagacgtatgcagagtacatccagggtaaacaacagaaggagaag
ctcggccagacaaccaaatcctggggggaggacggatggatgaaacctcacttctcctcc
tctaccacttctgctgggtttgtttatcccagaagaaaacgcagcatcagtcctgttcag
ggagatctgggaacagaagcagctccagttccagatccttggaataactactcattccca
gatgacacagtcagcaagaagataaaatttgatgagctcagtggacaagcaaacgtcgac
gctgttgagagtaaaacatcagaaggatggctaaagataacagaatcttcaaattcaccc
gacttgagtcatgtcactgatgaaaagagtcctgagggcacagatccagacaaatgtgtt
gatgggacgggcacctggcatcaaaccccaacggcaccaacgaggaaaggtcaaaagaac
aagaaaaagaagactgaggcaacagagtctacaacctccctgtttgatgtcccagaagtc
tggtag
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