Nothobranchius furzeri (turquoise killifish): 107390304
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Entry
107390304 CDS
T05163
Symbol
casc3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03013
Nucleocytoplasmic transport
nfu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107390304 (casc3)
03015 mRNA surveillance pathway
107390304 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107390304 (casc3)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107390304 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
107390304
NCBI-ProteinID:
XP_015822420
UniProt:
A0A1A8AX73
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Position
sgr14:44138695..44158386
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AA seq
749 aa
AA seq
DB search
MADRRRRRRRASQDSEDDESGSGSDSGRSGSPVTKARGRDPEPVEVTESRTEAKSDVESE
CESEDGAGEAVLSDYDSADPEENRSHSEGVEEEEEGYSEEEAPAATSEPKPSVAVDPKPE
EVEEEEKAEEEAEGHSKEEPKGEDKENLTGERQSGDGQESTNGPETKAGGKPGQQLDDDE
DRKNPAYIPRKGLFFEHDVRGHTQEEERPKGRNRKLWKDEGRWEHDKFREEEQAPKSREE
LIAIYGYDIRNGGGSGDRAYRQRRPRQSLSPNKDKRWRDGGGPRPARSWQNREGAAPTSS
APPSSSAFPPLSAGQRSSNPARLSTSRNRPPHQNQTHSSSQLEFRSSESSQAHARERLGP
KAQSEPAGERGLASKVGRGPVGRGGSAVVIEDVSVSQEGAGDEDLSSVSAATAASPQAGT
YRSPRRQMQDQRGITDRSASGFTSSTSDPALQSATANQEASPPTERQVERKSYSLARRTR
SRPSDLGSKQTSVEESTSGGNTSSPSSGGGKSWTGGGDGSNQAAEAGLAELDQDVARLNL
TRQNWSQSPTSYMRTEMRGPLHMAGSPQFPNMEEMGVSSSRAKRYSSQRQRAVPEPAPAM
HLGVMEGHYYEPMSYQGPIYTHSDGAASIPPQGMLVQPDMHIPHPGLHPHQSAGPIANPA
LFGGPPVSLSPGQPQQLLPPPFYPPPGVMTFPYPTIYPTPQGQAQVTYGGVTYYDTMQQQ
AQPKPSPPRRTSQPVTVKPPPPEVPFASE
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgaaggaggaggcgcgcgtctcaggacagcgaggacgacgagtcc
ggttctggttcggacagcggaaggtcgggttctcccgtgacaaaggctcgaggtcgagat
cccgaaccagtggaggtgacagagagccggaccgaggcgaagagcgacgtggagtccgag
tgtgagagtgaagatggagccggagaagctgtcctctcagattatgacagtgctgatccg
gaggaaaaccgctcccattcagagggggtagaggaggaagaggagggttacagtgaagag
gaagctccagcagcaaccagtgagcccaaaccttcagttgctgtcgacccaaaaccggag
gaggtggaagaggaagagaaggctgaggaggaagcagaaggacacagtaaggaggagccc
aagggggaggacaaggaaaacctcacaggagagaggcagagtggtgatggacaggagtcc
accaatggtccagagacaaaggctggagggaaaccaggtcagcagcttgatgatgatgaa
gacaggaagaaccctgcctacatcccaaggaagggactgttttttgagcatgatgtccgc
ggccacactcaggaggaagagagacccaaagggcgaaataggaagctgtggaaggacgag
ggccgctgggaacacgacaagttcagggaggaggagcaggctccaaagagccgtgaggaa
ctcattgctatttacggttatgacatccggaatggtggcggttctggagaccgagcgtac
agacagcgtagacccagacagagtttgtctcccaacaaggacaaacggtggagagacgga
ggaggaccgcggccggcccgatcctggcagaaccgagaaggagctgctccaacttcttcc
gccccgccttcctcttctgcatttcctcctctttctgctggtcagcgcagcagcaaccct
gccagactgtccacctcccgcaacaggcctccccaccagaatcagacacactcttcatcc
cagttggagttcaggagttctgaatcatctcaggctcatgccagagagcgtcttggtccc
aaagcccagtctgagcctgcaggagagaggggtttagccagcaaggttgggcggggtcct
gtaggaagaggaggctctgctgtggtcattgaggatgtttctgtcagccaagagggcgca
ggagatgaggacctgagctcagtgtctgcagcaacagctgcttccccgcaggcaggtaca
taccggtcacccaggcggcagatgcaggaccaacgaggcatcacagacagatctgcatct
ggatttacttcatctacatctgacccagcgttacagtcagcaacagccaatcaggaggca
tctcctcccactgaacggcaggtggagcgcaaatcatactcactggctcgcaggactcgc
tcacgaccctcggacctgggcagcaagcaaacctccgtggaggagtccacatctggtggg
aacacctcctcccccagcagtgggggaggaaagagctggacaggagggggagatgggtcg
aatcaggcagcagaggcagggctggcggagctggaccaagacgtggctcgactcaatctg
acccggcagaactggagtcagagtccgacatcgtacatgcgcacagaaatgagaggtccg
ctgcacatggctgggtcgcctcagttccctaacatggaagagatgggcgtaagctccagc
cgggctaagcgctactcgtctcaacgtcagagagctgttccagaaccggcaccagccatg
catctaggagtgatggagggacactactacgagcccatgtcgtaccagggaccaatctac
actcacagtgatggtgctgcctccatcccaccacaaggcatgctggtccagcctgacatg
cacatccctcatcctggtctccatccccaccaatcagcaggccccatcgctaacccagct
ctcttcggaggcccccctgtttcgctgtctccagggcaaccacagcaactgctgccacca
ccattttatcctccaccaggggtcatgaccttcccctaccctaccatttacccaacccct
cagggtcaggcacaggtgacctatggtggcgtgacatattacgacacgatgcagcagcag
gcacagcccaaaccttctcctccccgccgcacctctcagcctgtcacagtcaagcccccc
cctccagaggtgccctttgcctcagagtga
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