Nothobranchius furzeri (turquoise killifish): 107390572
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Entry
107390572 CDS
T05163
Name
(RefSeq) cadherin-23-like
KO
K06813
cadherin 23
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
nfu03037
]
107390572
04515 Cell adhesion molecules [BR:
nfu04515
]
107390572
Cilium and associated proteins [BR:
nfu03037
]
Primary cilia and associated proteins
USH complex and associated proteins
107390572
Cell adhesion molecules [BR:
nfu04515
]
Cadherins
Major cadherins
107390572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Cadherin_CELSR2_9th
PCDH15_12th
ATP1G1_PLM_MAT8
Bac_DnaA
Motif
Other DBs
NCBI-GeneID:
107390572
NCBI-ProteinID:
XP_015822862
LinkDB
All DBs
Position
sgr15:12779365..12805134
Genome browser
AA seq
1530 aa
AA seq
DB search
MDGELRVRKDVELDRESIAFYNITVTARDLGTPSLNSSVVVGINVLDVNDNDPVILNLPS
NTSVSEGAAIYTSVAQVQARDADSGRNALLTYNITAGNLDGAFYISETTGVVQVNRPLDR
ERVAEYTLTITVKDNPENPRNARRDSDFLIITILDVNDNRPIFTKTSYRGEIMENSAAGS
VVTILNGPVLAEDKDVGINAVVTYRLLGARVDLFTVDSNTGAVLVRQGAKLDREAFQDPR
VELILVAEDVGGLNSSVPLTVSILDQNDNPPVFNPSSFSVRIPENSPAGVVVTQLSATDA
DAGSNGWLTYRLESGAQDRFVVDPLSGAVLVGNATLDREERASYRLVVMATDRGTPPLSG
TATLTVLLDDVNDSRPRFLQPITIINVNESTPPGVVVATLAAEDPDLNPRLEYYIISVEA
KDDGNSPVNGLQDSFGIDLHTGAVFVRKPINRELVATFEIIVSVHDNASDIIDKSVSVPN
AKLTINVLDVNDNAPQFRPFGVTNFTEKILEGAQPGTTLLSVSAVDPDKGPNGQVTYQLL
NLPRGGYVRLEDPSVGKIVANQTVDYEQVQWLNFTIQAQDHGTPPRSTELPVYLLIVDVN
DNNPVFLQPSYQVAVLESVALGTNVVRVRATDADSGLFAVIEYSLVDGLGKFNIRPTTGE
IYILSPLDRETMDHYTLTAVARDNPGGSPNNRRENSVQVLVTVLDVNDYRPRFTASVYNT
SVFENEPSGTSVITVSAVDLDEGQNAVVFYSMFGPGLDTFTLDPVTGLVRSRRLLQSWER
FNFTVVATDQGRPPLSGTADLIIIVIDVNDNRPVFVRPANGTIIHITEEQPPGIPVYEVH
ATDADAGLNGEVRYAFLPTGAGNRDWENFHIDPITGVITTTVKLDREKQAIYSLIIVARD
LGQPVPYETTQPLQVALLDIDDNEPVFLKPPPGALRYQTLTVREESPAGTVVGNVSRAVD
ADERSNAIVYYFIAGGNDDGNFGLSLGGELRVLKVLDREIVPVYTIIIKASSNKSWTPPK
GQRSLQAKALNPALDPSLLEVRIELEDIDDQTPRFTKAEYTAGVAANAKVGSDLIRVLAI
DNDIGNNSLVQYHIVTIRYFQTQSNGSEDVGNVFTIGLSDGVIRTYDLFTAFNPGYFQLE
ILACDLAGHSATANVNIYILRDDQRVKIVFNEIPDVVRNNKEDFVKLLSNITGAIVNLDD
IQFHVDKKGRVSYGQTDMLIHVVNNQTNTILSVDRVIQMIDDNKEQLRSLFRTYSVVDVQ
PAVSDKMPDDISTLQLVIIILAVLLCLAGILFVTMNWHYRRVHERKLKAIVAGSTGNQGL
MDILDMPNTNKYSFEGANPVWLDPFCRNLELAAQADHEDDLPENLSEITDLWNSPARTHG
TFGREPQARPEDDHYLRAAIQEYDNIAKLGQIMREGPIKLIQSDLDEEEHLGMVGDHSPL
RFKHKLPVELKGPDGVHVVHGSTGTLLTSDLNSLPEDDQRALARSLEGLNSDGGLYSERN
ARTESAKSTPMHRHKDGDSLSENPLEVTEL
NT seq
4593 nt
NT seq
+upstream
nt +downstream
nt
atggacggtgagcttcgagtgaggaaggatgtggagctggacagagagagcatagccttc
tacaacatcaccgtcaccgcccgagacctgggaactccatctctcaatagctcggtggtg
gtgggcattaatgtcttagacgtgaatgataacgacccagtcatccttaacttgccttct
aacacaagtgtcagtgaaggcgccgcgatatacacatctgtggcccaggtacaagcccga
gatgcagatagtggacgtaacgcgctgctcacttacaacataactgctggaaacctggat
ggagccttctacatcagcgagacaacgggtgtggtgcaggtgaacagacccctggacaga
gagcgggtggctgagtacacacttaccatcactgttaaggacaacccagagaacccccgc
aatgctcgccgggactcagacttcttgatcatcaccattctggatgtgaacgacaacaga
cctattttcacaaagaccagctacagaggtgaaatcatggagaactctgcagcaggcagc
gttgtaaccattttaaacggcccggttctggctgaggataaagacgttgggattaatgcc
gtggtgacgtaccgactcctaggtgcaagagtggacctgtttacagttgactccaatact
ggtgctgttctcgtgcgtcagggcgccaaattggatcgggaagcttttcaggaccctcgg
gtggagctgattctggttgcagaggacgtaggaggtttaaacagcagtgttcccctcaca
gtctcgattctggaccagaatgacaacccgcctgttttcaacccatccagtttcagcgtt
cgaatccctgagaacagccccgctggtgtggtggtgactcagctgtccgccaccgatgcc
gatgctgggtctaacggctggctaacctaccggttagaaagtggagctcaggaccgcttt
gtggttgacccgctctctggtgctgtcctggtaggaaacgccacgcttgacagagaggag
cgtgcatcctaccgcctcgttgtgatggcaaccgatcgtggaacgcctcctttgtcagga
acagccaccttgactgttctcctggacgacgtcaatgactcgagaccgcgttttctacag
ccaataactataataaatgttaacgagtcaactccacctggtgtggtggtggccacgctt
gccgctgaagacccggatctaaatccacggctcgagtactacatcatctcagtggaggca
aaggatgatgggaacagcccagtaaacggccttcaggattcttttggtattgatttacac
acaggcgccgtctttgtgcgcaaaccaatcaacagagagctggtagccacgtttgagatc
attgtgtcagttcacgacaacgccagtgacattattgacaagtcagtcagtgttcccaat
gcgaaactaaccatcaacgtgttggacgtcaatgacaatgctcctcaatttcggcccttt
ggagtgaccaacttcacagagaagattttagaaggggctcagcccggcacaacgctgcta
tccgtgtccgctgtggatccagataaaggcccaaatggtcaggtcacttaccagctcctc
aatttaccgagaggggggtatgtcagactggaggacccttccgttgggaagattgtggcc
aaccagacagtggactatgagcaagtgcagtggctgaatttcaccatacaagctcaggac
catggcacacctccacggagcaccgaactgcccgtttatttactcatagtggatgtcaat
gacaacaatcctgtctttctacagccttcctatcaggtggctgtgttggagagtgtggcc
ttgggcaccaacgtagttcgcgtcagagctacagacgctgattctggactctttgctgtt
attgagtacagcctcgtagatggactgggaaagtttaacatcaggccaaccactggagag
atctacatcctgtcccctctggacagagagacgatggaccactacactttgaccgcggtt
gctcgagacaacccgggggggagtccaaacaacaggagagaaaattctgttcaggttctg
gtcacagttctggatgtcaacgattatcggccacgcttcacggccagtgtgtataacacc
agtgtgtttgagaacgagcccagcgggacgtccgtgataacggtctctgccgttgacctg
gacgaaggacagaatgccgtggtgttctacagcatgttcggaccaggtttagatacattc
accctggatccagtcacgggactggtgcgttctcgccgtctgcttcaatcgtgggagcgc
ttcaattttaccgtggtggccacggatcagggacgtcctcctctgtcgggcactgcagac
ctgatcatcatcgtcatagatgtgaatgacaacagacccgtgtttgtcaggccagctaat
ggaaccattatccacatcactgaggagcagcctccaggtataccggtctacgaagtgcat
gctacagacgctgacgctgggttgaatggagaggtccgctacgccttcttgccgacagga
gcgggaaacagagactgggaaaatttccacattgatcccataactggggtcatcaccacc
actgtgaagctggaccgagaaaaacaggccatttatagccttatcattgtggcccgtgac
ctgggtcagccggtgccttatgagaccacacaacctctgcaggtggcgctgctggatatt
gatgataatgaacctgtcttcctcaaaccaccacctggtgccttgcgttaccaaacactg
acggtgcgtgaggagtctcctgcaggtaccgtggtgggtaacgtaagcagagctgtggac
gcagacgagaggtccaatgccatcgtctattatttcatcgccggaggaaacgacgatgga
aactttggcctaagtctaggaggagagctgagggtgctcaaagttctggatagggagatt
gttccagtgtacaccatcatcatcaaggcttccagcaacaagagctggactcctcccaaa
ggtcagaggtctttacaagccaaagccttgaacccagctctcgacccgagtctgctggaa
gtccgaattgaactggaggacatcgacgaccagacgccacgcttcactaaggctgaatac
accgcaggagttgcagcgaatgccaaagtgggatcagatctcatcagagtgctggccatc
gacaacgacattggtaacaacagcttggttcagtatcatatcgtcacaatccgctacttc
cagacccaaagcaacggcagtgaggatgtgggcaacgttttcaccattggtttgtcagat
ggagttattcgcacctatgacctcttcacggctttcaatcctggctactttcagcttgag
attctagcctgtgaccttgctggacacagtgcaaccgccaacgtgaacatctacatcctc
cgagacgaccagagggtcaagatagtctttaacgagatacctgatgttgttcgtaacaac
aaggaggacttcgttaagctgctgtctaacatcactggagccattgttaacctggatgac
atccagttccacgtggacaaaaagggcagagtgagctacggtcagacggacatgctcatc
catgtagtcaacaaccagaccaacaccatcctcagcgttgacagagtaatccagatgatt
gacgacaacaaggagcagttgaggagcttgttcaggacgtacagtgttgtggatgttcag
cctgctgttagtgacaaaatgcctgacgacatctccaccctacagctggtcatcataatc
ctggccgtgctgctgtgcttggcgggaattttgtttgtgacaatgaactggcattaccga
agagtacatgagaggaagcttaaagcgatcgttgcaggttcaacaggaaaccagggtcta
atggacatcctggacatgcccaacactaataaatactctttcgagggagctaatcctgtg
tggctggacccgttctgtcgcaacctggagctagctgctcaggccgaccacgaggacgac
cttcccgagaacctgagtgagattactgacctgtggaacagtcccgcacgcactcatggc
acctttggtcgagagcctcaagcgaggcctgaggatgatcattacttgagggcagccatt
caggagtatgacaacattgctaaactgggccagattatgagagaagggcctattaagctc
atccagagtgatctggacgaggaagagcatctgggcatggttggcgatcacagccctcta
cgctttaagcacaagcttcctgtggagttgaaagggcccgacggtgtgcacgtggtccac
ggcagcactggcactctcctgacctctgacctcaacagcctgccagaggacgaccagcgc
gccttggcacgctctctagagggtctcaattctgacggggggttgtattcggagcgaaac
gcccgcacagagtcagccaagtccaccccgatgcatcgccacaaggacggcgactcgctg
tccgagaacccgctggaagtcacagagttatga
DBGET
integrated database retrieval system
