Nothobranchius furzeri (turquoise killifish): 107390753
Help
Entry
107390753 CDS
T05163
Symbol
shoc2
Name
(RefSeq) leucine-rich repeat protein SHOC-2
KO
K19613
leucine-rich repeat protein SHOC2
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
107390753 (shoc2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_14
LRR_LRWD1
LRR_13
LRR_NLRC4
LRR_9
LRR_At5g56370
PRTP
Motif
Other DBs
NCBI-GeneID:
107390753
NCBI-ProteinID:
XP_015823139
UniProt:
A0A1A8VA30
LinkDB
All DBs
Position
sgr02:complement(5221926..5238044)
Genome browser
AA seq
582 aa
AA seq
DB search
MSSTLGKEIDSKEKDPKGGLTGKEREKEAKALASLVKDGGKETKTKGKDAKEGRKDTSSS
TPGVAFSVDNTIKRPNPAQGGRKKSSNAEVTKDVNKCREEKSERLDLSKRSLQSLPPCIK
EPTQLLELYLYSNKLQSLPAEVGCLSGLVTLALSENSLTSLPDSLDSLKNLRMLDLRHNK
LREIPPVVYRLTSLVKLYLRFNRITTVEKDIRNLSKLTTLSIRENKIKQLPAEIGELCSL
ITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPETIGNLASITRLGLRYNRLSAIP
RLLAKCRELEELNLENNNISMLPEGLLSSLVKLTSLTLARNCFQSYPVGGPLQFATIYTL
NMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPED
VSGLIAIEVLILSNNLLKKLPQGIGNLKKLRELDLEENKLECLPNEIAYLKDLQKLVLTN
NQLTTLPRGIGHLISLTHLGLGENLLQHLPEEIGTLENLEELYLNDNPNLHSLPFELALC
SKLSIMSIENCPLTHLPPQIVAGGPSFIIQFLKMQGPYRAMV
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtactttaggcaaagaaatagattcaaaagaaaaggaccccaaaggcggtctg
acaggtaaagaaagggaaaaggaggccaaggctctagccagcttagtcaaagacggtggc
aaagaaacaaagaccaaagggaaagatgccaaagaaggaaggaaggacacaagcagctca
acacctggtgttgccttctctgttgacaatacaattaagcggccaaacccggcacaaggt
ggacgcaagaaatctagtaacgcagaagtcactaaagatgtcaataagtgtcgggaggag
aagtctgagagactggacctctctaaacggtccctgcagagtttgcccccctgcataaag
gagccgactcagttgctagaactctacttgtacagcaacaaactacagagcctaccagct
gaggtgggttgcctatcaggcctggtcactttagcgctcagcgaaaactccttgaccagt
ttgcctgattccttggactccctgaagaatctccgaatgcttgacctgcggcacaacaag
ctcagagagattccacccgtcgtctatcggctgacgtctctggtcaagctctacctgcgt
ttcaatcgcatcacaacagtggagaaggacattcgaaacctgtccaagctcaccacgctg
agcatccgcgagaacaagattaagcagctgcctgcagagataggggagctatgcagcctc
ataaccctggatgttgcccataatcagttggaacatctaccaaaggagattggaaattgc
acacaaataaccaacctggacctgcagcacaacgaactcttggacctgccagagactata
ggcaatttagcaagcataactcgtttaggtctgcgatataatcgattgtcagcgatcccc
agattgttagccaagtgtcgggaactggaggagctaaaccttgaaaacaacaacatttca
atgttgccagaagggctgctgtcaagtttggtaaagctgacgagtctgacgctagcgagg
aactgcttccagtcgtaccctgtaggggggcctttgcagttcgccaccatttacaccctc
aacatggagcacaaccgcatcaataagatcccatttggcatcttctccagggccaaagtg
ttgagcaagctaaacatgaaggacaaccagttaacgtctctgccattggattttggcaca
tggactagcatggttgagcttaacctggctactaatcagttgactaagattccagaagat
gtcagtggtcttatcgctatagaggtgttaatattgtccaataacctcctcaagaagtta
ccacaaggtattgggaatctgaaaaagctacgagagcttgaccttgaggaaaacaagctg
gaatgtctaccgaacgaaatcgcttacctgaaagatttacagaaactggtgttgacaaat
aatcagctgactacgttacccagaggcatcggccacctcatcagcctgactcatctgggt
ttgggggagaatctgctgcagcaccttccagaggagatcggcacgctggagaatttagag
gaactttacctcaacgacaaccccaatctgcacagccttccgttcgagctggccctctgc
agtaagctatccatcatgagcatcgagaactgtcctctcacccacctgccaccccagatt
gttgcaggaggtccttctttcatcatccagttcctcaagatgcagggaccctaccgtgcc
atggtctga
DBGET
integrated database retrieval system
