Nothobranchius furzeri (turquoise killifish): 107391432
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Entry
107391432 CDS
T05163
Symbol
col20a1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
FN3_Tor_3rd
VWA_2
New_glue
Motif
Other DBs
NCBI-GeneID:
107391432
NCBI-ProteinID:
XP_015824229
UniProt:
A0A9D3BKV7
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Position
sgr15:38298489..38346529
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AA seq
1560 aa
AA seq
DB search
MNSHLPASSSLPVWLMLHFLPTVFLLLSSGVHGQGRLKLTVLSEDRLQMKWKEADGPVQG
YKVRVRTISEEPQPELMLTTTRGRATVAGLDSGQEYSLQVFVLNGTTEKLLAKRRFTMDS
LQEEEMIRSGSRENRKKMLPGGSGSGDLDDVTEVLLGLPTVRFPEPTTTTTTTAAAVTTT
GREPPAAETLSELPDDAPEKISKEKRKRKKEKERHRSAVENKEEPGMKQATPPRKPYECD
SDAAADIMLLVDGSWSIGRSNFRRVRDFLEGLVTPFHIGPLYIQIGLTQYSGDPRTEWHL
NNFTTKDQLLEAVRNFRYKGGNTFTGQALLHVMEESMRPEAGTRDDAPFFLVLLTDGKSQ
DDAIAAANRLKSAGVEIIAVGVKNADEAELRQVASEPVDLNVYNVNDFPLLSKLVARLVH
ILCGRIKDRGITKRMDPGPTEDPAVSYPSPTDLRFSELGSRQVKLHWTNPAKPVQQYRVV
YHSAESQSPKEVVLSGSDSTVLLDGLSSQTLYHVSIFPVFAESVGLALRGTVATLPLATP
ANLEVTPSSYSTLRVSWAPAPGATQYMILYSALSHGEPDDAQEEKFGAGDTVVELTELLP
ETDYSVTLYALYDEDPSDPVTSVASTLPLPEPVNIQFPMVTHSMVKVSWVPGAVDVPGHR
ITYSTNHGSVIKQVEVTKLNSVLVQNLSSLSRYLVSVQSHYPQGLSASLTGNITTLKVPS
PSDLRVTNFSGSDVTVRWEAAADDVVTYLIKWISLSGGDLRQLKVDGDSEGAILEGVEED
REYQISLSALYGDGAQSEAVAIRYSTLSGGGPSSVTVSEETAVSMVVSWTPPNAHVLQYL
VTYTPLTGAETQDRTVLVPGGNKQVVLESLQPDTRYSVLVTAEYRSREGGSGSAQGKTAS
LRVSSVSVVRSDHSSICLSWRPVSAVDGYRIVIQSVKDKRTKQEVADESSSSFCFTDLEP
ETLYRISVQSLLGSAEGAAVSILHPTASAPVRTSVHPRMYPIHNEVCPEVTIRNSIVKGF
DMMEAFGLTQRAHSSVEGVAAEPFVFNSLPTYTLYRDVQLTQSTKFIHPAGFSPEHTISI
AFRLLQDTPREPFALWQLTDNDFQPKMGVVIDPSTKHLLYFSLDYRGEVQELTFDQPQVH
KLFYGSFHKVHLCVSQVSVSLSVDCQHVGERPARPLGNTPTDGFEMLGKLVKTRGPNSGS
APYQLQSFEIVCNTTWASEDTCCDLPGVRDEESCPAPAYTCACSSDIPGAPGPTGPIGRP
GPRGEKGEKGETGQKGEVGPPGKSGFEGGLGAVGSVGPRGITVQGKVGPPGARGERGDPG
RPGVQGLPGPQGQKGEEGIPGPQGIRGVEGNIGSPGTSGPRGFQGIPGHPGPMGERGPSG
LAGPTGLPGNKGDRGEKGEPQSVAMIYQLVTQACEQMIHKEVLKLDMYINKISRKPVPIE
EPVGQPGEPGIPGPRGPPGARGNQGNVGSRGRSGRPGYPGEQGRRGTLGEKGDPGNNVQG
PSGIKGFAGLPGESKLGVPGSKGDDGNPGPPGIPGFSGQTGEIGPPGVCDSSGGCQSVPQ
NT seq
4683 nt
NT seq
+upstream
nt +downstream
nt
atgaattcccatcttcccgcctcctcgtcgttacccgtctggctaatgctgcattttctt
cccaccgtcttcctgctgctgtcctcaggagtccacggccaaggtcgccttaagctgacg
gttctgtcagaggacaggctgcagatgaaatggaaggaggccgacggacccgttcagggc
tacaaagtccgagtcagaaccatttcagaggaaccacagccagagctgatgctgacgaca
acccgaggccgagcaacagtggcgggattggactccggtcaggaatattccctccaggtc
tttgtgctcaatgggacgacggagaaacttctggcaaaaagacgattcaccatggacagt
cttcaggaggaggagatgatccgcagcggcagccgggagaacaggaagaagatgttgcca
ggcgggtcaggatcaggagatctggatgatgtgacagaggttctgttgggtctgccaaca
gttcggttcccagagcccacaacaacaacaacaacaacagccgctgctgtcacaactaca
ggtagggagcctccagcagcagaaaccctttctgagctccccgatgatgccccagagaaa
atctccaaagagaaaaggaagaggaagaaggaaaaagagcgacaccgctccgctgtggag
aacaaggaggaaccggggatgaaacaggcgacgcctcccagaaaaccgtacgagtgtgac
agcgatgcagcggcagacatcatgttgttggtggacggctcctggagcattgggcgctcc
aacttcaggcgggtcagagacttcctggagggcctggtgacaccattccacattggaccg
ctctacattcagatcggtttgacccagtacagtggagacccccgcacagagtggcacctg
aacaacttcaccactaaagaccagctgttggaggcagtgaggaattttcgatataaagga
ggaaacacgtttacaggacaggcgctgctccacgtcatggaggaaagcatgaggcctgag
gcaggcaccagagatgacgcgccatttttcttggtcttgttgactgacgggaagtctcag
gatgatgcgatcgctgcggcaaaccggctgaagagcgcaggcgttgaaatcattgctgta
ggtgtgaagaatgcagatgaagctgagctgagacaggtggcgtctgagccggtggatcta
aacgtctacaacgtgaacgacttccccctgctcagcaaactggtggcacgactggttcac
atcctgtgtggaaggataaaagaccgtggcatcacaaaacggatggatcctgggcctaca
gaagacccagctgtctcctacccgagtcctactgatctccggttttctgagctgggatcc
aggcaggttaagctgcactggaccaatcctgcaaaaccagtccagcagtacagagtggtg
taccacagtgctgagagtcaaagtccgaaggaggtcgtgttgtctggctctgactccacg
gtgctgctcgatggcctctcctctcagacgctctaccacgtctccatcttcccggtgttt
gcagaaagcgtcggtctggctctcagaggaaccgttgctacattgccattggccacgccg
gccaatctggaggtgacaccttcctcctacagcacgctgcgagtgagttgggctccagct
cctggagctactcagtacatgatcctgtactcggcactcagccacggggagcccgacgac
gcacaggaggagaaattcggtgctggtgacacggtggtggagctcacagagttgctgcca
gagaccgactactccgtcacactttatgctctctatgacgaagatcccagtgatccggtc
acttctgttgccagcacactccctctcccagagccagtaaatattcagttcccgatggta
actcacagcatggtgaaggtgagctgggtgcccggcgccgtggacgtccccggccacaga
atcacctacagcacaaaccatgggagtgtcatcaagcaggtggaggtaacaaagttgaac
tcagttctggtgcagaacctctcatctctatccagatacctggtctcagtccagtctcat
tacccacaaggcctttctgcctcactcaccggcaacatcaccacgctgaaggtgccttcc
ccgtcagacctcagagtcaccaacttttcaggcagcgatgtcaccgtgcgctgggaggcc
gccgccgatgacgtggtcacctacctcatcaaatggatctctctcagtggaggagacctg
agacagctgaaggtagacggcgatagtgaaggggcgattctggagggggtggaggaggac
agagaataccagatttctctttcggcgctttatggagacggagctcagagtgaagctgta
gctattcgctacagcaccctgtccggtggaggtccgtccagcgtaacggtttctgaggaa
accgcagtcagcatggtggtcagctggacgcctccaaacgctcacgtcctgcagtacctc
gtgacctacacaccgctaaccggagctgagacgcaggacagaactgtgttggttccaggt
ggtaataagcaggtggtgttggagtcgttacagcccgatacacgttacagcgtcctggtc
actgctgagtatcgcagcagggagggaggcagcggttcagctcaaggcaaaaccgccagt
ctgcgtgtgagcagtgtgagtgtggtcaggtcagaccactccagtatatgtctgtcatgg
agaccggtgtctgcagtggacggctatcggattgttatccagtctgttaaagacaagcga
accaagcaggaagttgcagacgagtccagcagcagtttctgcttcaccgacctggagccg
gagactctgtatcgcatcagcgtgcagtcgctgctcggctcggctgaaggtgctgccgtc
tccatcctccatccaacagcctcggctccagtcagaacttctgtccatcctcggatgtac
ccgatccacaatgaggtttgtccggaggtgaccatccgaaacagcatcgttaaagggttc
gacatgatggaggcgttcggtctgactcagagagctcactcgtcggtggagggtgtggcc
gctgagccgttcgtcttcaactctctgcctacatacactctgtacagagacgtccagctg
acccaaagcaccaagttcatccaccccgcaggtttctctccggaacacaccatcagcatc
gccttccgcctgctgcaggatacgcccagggagcccttcgctctctggcagctcaccgac
aacgacttccagccaaagatgggagtggtgattgacccttccaccaaacatctgctgtac
ttcagtctggactacagaggggaggttcaggagctgacgtttgatcagccgcaggtccac
aagctgttctacggcagctttcacaaggtccacctgtgtgtgagccaggtgagcgtgtcc
ctgtcggtggactgtcagcatgtcggggaacggccggctcgtcctctcggcaacacgccg
accgacggctttgagatgctggggaagctggtgaagacccgaggacccaacagtggatcc
gctccgtaccagctgcagtcctttgagattgtgtgcaacaccacgtgggcttcagaagat
acctgctgcgaccttccaggagtgagagacgaggagagctgtcccgctcctgcttacacg
tgtgcctgttcttcagatattccaggagctcctgggcccaccggaccaattgggaggcca
ggtcctcgtggagagaagggcgagaagggagagacgggacaaaagggagaggtgggcccc
ccagggaagtctgggtttgaggggggtcttggagccgtagggagcgtaggacctcgaggg
ataacagttcagggcaaagtgggtccacctggagccagaggagaaagaggagatccaggg
cgaccgggggtacaagggttaccaggacctcaaggtcagaagggggaggaggggatccca
ggacctcagggtatcagaggtgtggagggcaacatcgggtcccccggtacctccggaccc
aggggtttccaaggaattccaggacacccagggccgatgggagaaaggggcccctcgggg
cttgctggacctacgggtctaccggggaacaaaggggatcggggtgaaaagggggaacct
cagtcggtggccatgatctatcagctggtcacgcaggcctgtgagcagatgatacacaag
gaagtgttgaagcttgacatgtatattaataagatcagtcgtaaaccagttcctattgag
gagccggtggggcagccgggggaacctggtataccaggacccaggggccccccgggtgcc
agaggtaaccaggggaacgtcggctctagagggagatctgggaggccagggtacccagga
gagcagggacggaggggtactctgggagagaaaggtgatcctgggaacaatgtccaggga
ccatcagggatcaaaggatttgcaggtcttccaggggaatccaagttgggtgtcccgggg
tctaaaggagatgacggaaatccaggacctccaggaatccctggattttcgggccaaact
ggcgagattggaccgccgggggtgtgtgacagcagtggtggatgtcaaagcgttcctcag
taa
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