Nothobranchius furzeri (turquoise killifish): 107391862
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Entry
107391862 CDS
T05163
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04140
Autophagy - animal
nfu04142
Lysosome biogenesis
nfu04145
Phagocytosis
nfu04148
Efferocytosis
nfu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
107391862 (vps39)
04142 Lysosome biogenesis
107391862 (vps39)
04140 Autophagy - animal
107391862 (vps39)
04148 Efferocytosis
107391862 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
107391862 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nfu04131
]
107391862 (vps39)
Membrane trafficking [BR:
nfu04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
107391862 (vps39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
VPS18_solenoid_2nd
Clathrin
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
107391862
NCBI-ProteinID:
XP_015824821
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All DBs
Position
sgr16:complement(15591823..15602319)
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AA seq
876 aa
AA seq
DB search
MHDAYESVPILEKLPLQIDCLAGWEDWLLVGTKPGHLLLYRIKKDAGSNRFEVTLEKSNK
NFSKKIQQLYVVSQYKILVSLLENNIHVHDLLTFQQITVVNKAKGATLFECDLQQTSPGE
ERLRMCVAVKKKLQLYYWKDREFHELQSDLGVPDIPRSMAWCENSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVTPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTIEPRLLVQSVELQRPRFITSAGSDIVYIASNHFVWRLVPVSI
ATQIRQLLQDKQFELALQLAKMKDDSDGDKKQQIHHIQNLYAFNLFCQKKFDDSMQGFAK
LGTDPTHVIGLYPDLLPSDYRKQLHYPNPLPTLSGAELERAHLALIDYLTQKRSHLVKQL
NDSDPSTTSPLMEGTPTIKSRRKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEES
EYVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGAENLG
IIFEFSPWVLKMCPEDGLKIFTEDLTEVETLPRDKVLQFLKEGFEELAIPYLEHIIYVWD
EKGPEFHNVLIQLYLGRVQRLMKQYLNSLPEGVPAVPAGQENGELGEFRNKLLSFLDISC
SYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTHMAEEYCHRHYNSSVE
GSKDVYLSLLRMYLSPPDAHCLGPIKMELSEPQANLQAALQVLELHHSKLNTTKAINLLP
ANTQIQEIRVFLESVLEQKAQRKRCNQVLKSLLQAEFLRVQEERIFHQQVKCVITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRSVCPTEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcctatgagtcggtgcctattttagaaaagcttcctcttcagatcgactgc
ctcgctggctgggaggactggctgctggtcggcactaagccaggacatctcctcctctac
agaataaagaaggatgcaggctccaaccggtttgaagtgactttagaaaagtccaacaag
aacttttcaaagaagattcagcagctttatgtcgtctcacagtacaaaattctggtcagc
cttcttgagaacaacatccatgtccacgacctcctgacttttcagcagatcactgtggtg
aataaagccaaaggagccactctgtttgagtgtgacctgcagcagaccagtccaggagag
gagaggctcaggatgtgtgtggctgtgaagaagaaactgcagctgtattactggaaggat
cgagagttccacgagttgcagagcgacctgggtgtcccagatatcccgaggtccatggcc
tggtgtgaaaactccatttgtgttggtttcaaacgagactattacctgatccggatggac
ggtcgcggctccatcaaagagctctttcccactgggaagcagctggagcctctggttacc
ccactggctgatgggaaggtcgctgttgggcaggatgacctcaccgtggttcttaatgaa
gaaggagtttgtacccagaagtgtgccctgaactggacagatatacccatcgccatggag
caccagcctccctacatcattgcagttcttcctcggtacgtggagatccggaccattgag
ccgaggctgctggtgcagagcgtggagctgcagagaccacgcttcatcacctcagcaggg
tctgatattgtgtacatagccagtaaccactttgtgtggcgcctggtgccggtatcgata
gccacccagatccgacagcttcttcaggacaagcagtttgagctggctctccagctggcg
aagatgaaggatgattcagacggtgataagaagcagcagattcatcacatccagaatctc
tatgcctttaatctgttttgccagaagaaatttgatgactccatgcaggggtttgcaaaa
ctcggtacagatcccacacatgtgatcggcctttacccagacctactcccttcagactac
cgtaaacagctgcactaccccaacccgctccccacgctgtcgggggccgaacttgagagg
gctcacctcgctctcatcgattacctcacacagaaacgcagccaccttgtcaaacagctc
aatgactccgacccgtccaccacatctcctcttatggagggaacgcccaccatcaaaagt
cgccggaagcttctgcagatcatcgataccactctgctgaaatgttacctgcacaccaac
gtggccctggtctcccccctcctgcgtttggagaacaaccactgccacatcgaggagagc
gagtacgttctgaagaaagcccacaagtacagcgagctgattattctgtatgagaagaag
ggccttcaccagaaagctctgcaggttctgctggaccagtccaccaaggccaactctcct
ctgaagggtcatgagcgaactgttcagtacctgcagaggctgggagcggagaatctggga
atcatctttgagttttctccctgggtcttaaagatgtgtcctgaagatggcttgaagatc
ttcactgaagatctgaccgaggtggagactttgcccagagacaaggtgctgcagttcctg
aaggagggcttcgaggagctggccatcccgtatctggagcacatcatctacgtgtgggat
gagaagggcccagaattccacaacgtgctgattcagctgtacctgggcagggtgcagcgg
ctcatgaagcagtacctcaactctctaccagaaggggttcctgctgttcctgcaggtcaa
gagaatggagaactgggagagttcagaaacaagctgctgtcgttcctggatatctcctgc
agctatgaaccttccagactcatcagtgattttccatttgatgggttgctggaggaacga
gctctccttctgggtcgtatgggtaaacacgagcaggcgctcttcatctacgtccacgtc
ctgaaagacacacacatggctgaggaatactgtcaccgacattataacagctcagttgaa
ggaagtaaggatgtgtacctgtcactcctacggatgtacctgtcgcctcctgatgcccac
tgcctgggacccatcaagatggagctctcagagcctcaggccaaccttcaggccgccctg
caggttctggagctccaccacagcaagctcaacaccaccaaggccatcaacctgcttcca
gccaacactcagatccaagagatccgggtcttcctggagagcgtcctggagcagaaggct
cagaggaaacgctgcaaccaggttctgaagagtctgctgcaggccgagttcctaagagtg
caggaggaacggatcttccaccagcaggttaaatgtgtcattacagaagaaaagacctgc
agagtctgtaagaagaaaataggaaacagtgcgtttgctaggtatcccaacggtgtggtg
gttcattatttctgctgtaaagaccggagcgtgtgtcccaccgagcagtag
DBGET
integrated database retrieval system
